Array 1 54522-50513 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXV01000015.1 Neisseria elongata strain C2013018262 C2013018262_S38_ctg_1759, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 54521 33 100.0 34 ................................. TTGCGCGGACTTGGATTTGATTTGGGCGTCCAAG 54454 33 97.0 33 G................................ GGCGACAAATTCCGCATCATTGACCGGCACATG 54388 33 97.0 32 C................................ CCGAAAGGCGTTTTTAATCCACTCCCAGCCCG 54323 33 97.0 32 C................................ CCATGCCGACTGAGTGGCTACACACTTGTAGT 54258 33 97.0 33 C................................ ATCAAATCTATAATCACCTTCGCCACCATTAAA 54192 33 97.0 36 G................................ GTTGAGAAATTCGTAAAGTCTTGATTCCCAACCGTC 54123 33 100.0 33 ................................. TTACACTTGCCGCATACTTTTCCATCAGTCGGT 54057 33 97.0 34 A................................ AGAAAGAATACAAACGAGTGTTCGGTATATCCAT 53990 33 100.0 32 ................................. AATACCGCCGCACCCACAAACACACAGACCAT 53925 33 97.0 33 C................................ TTCTTGCAGCGCGCCTTGGTAGCGCAGCAGCTT 53859 33 97.0 36 G................................ ACAAAAATCCACCGCGCCAAATACCTGCGCTCACAA 53790 33 97.0 35 A................................ AACCAATACAGCCGCAGCCAGGCGTGGAAACACCC 53722 33 97.0 34 C................................ TCGGAAGCCTATTATCGGCCGCGTGTTGAGGGCA 53655 33 100.0 34 ................................. GCCACAAATCGGGTAAGCGCCGCCGAAATACTGG 53588 33 97.0 33 C................................ AGCGAACGGTACACTGTTACACGCATATATGCA 53522 33 97.0 33 A................................ TGAAATACGCATCCATGCAGTCTGCCCCGTCTA 53456 33 100.0 33 ................................. GCTTAAAGTTTTGTACGTCCGTTATTTTTTGGC 53390 33 100.0 34 ................................. TGAATATGGTAATGAGCACCGACCAAATCGCGGA 53323 33 97.0 33 C................................ TTGATCGCAAGGTTGGATTATCTGCATTGCACA 53257 33 97.0 34 A................................ CAGTAGACGTTAAGTTTGTCCGTCTTGAGGAAAT 53190 33 97.0 34 A................................ ATCCCTTTAAATCCATCGACTATATTTTTATTGA 53123 33 97.0 33 C................................ GGCGCATTCGCATTCCGCGCCACAATGGCCGCC 53057 33 97.0 34 G................................ CTTGACAGCTTCGTCCGCCGGCTCGTACAACGCC 52990 33 97.0 33 A................................ AAAACCCGCAATAGCAATGATTTTCACGCTTAC 52924 33 97.0 33 G................................ ATAATCTGGAGCTTGGCTACACGCCCGCCAATT 52858 33 100.0 32 ................................. ATATGACGGCCTTTGTCATTGTGCCGATGGGC 52793 33 97.0 33 C................................ TTGACGAACCCAAAGACGGCAAAGTGCCGCCCG 52727 33 97.0 32 C................................ TAGTATGGATTCTGCCGGTATGCCCTCGCGCA 52662 33 100.0 33 ................................. CGAACAGATGGCCGATGGCGCCTATCACGCGGG 52596 33 97.0 32 A................................ AATCTCACCGTTTTGCGCCGCTCGCAAACCTT 52531 33 100.0 33 ................................. CCACTATCAAGTCATTGTTTGCTCCGTAGTTTT 52465 33 100.0 34 ................................. TGATTGAGGCAGTTTTTAAAGTCCTTGTCGCACT 52398 33 97.0 32 C................................ CCAAGAGGCGGGAATTTTTTTTAATCAGCGTA 52333 33 97.0 33 A................................ CTTGACAGCTTCGTTCGCCGGCTCGTACAACGT 52267 33 97.0 33 C................................ TCGTATGAGTGGATTTGCGATGTCGCCAAAAAG 52201 33 100.0 33 ................................. CGGTGAGTTCGGGGGATATTGGCCGTTTTGGGA 52135 33 97.0 33 A................................ TAAGAAAATTTATGTTAGAGAAAATTTGATTGA 52069 33 97.0 33 G................................ ATCTTGGAAATTGCAGAAACCTGCAACAGACAA 52003 33 97.0 33 C................................ AAATTGAATTATTTCTGGTGTCTTAATGGTCAA 51937 33 100.0 33 ................................. GACACTTGAGAATCGACAATCACTAATCCAACG 51871 33 100.0 33 ................................. CGAATGGCTGGCCGTTAATGGTCAGCACCGCCG 51805 33 97.0 33 C................................ CTTAGGTAACGGTTGCGTTTCGGGCGCGTTGGA 51739 33 97.0 34 A................................ ATGTAGTCGATTAGCTGGTCTCCCGATACCAGCG 51672 33 97.0 33 C................................ TTGGTAAAACACCTGCAATGCGGCCCATGCCGT 51606 33 97.0 34 A................................ TTTGTCTGACTGTCGCATGCTTTCTTTTAAATCA 51539 33 97.0 33 A................................ CGCATAAAGGCCGTCTGCAAGCTTCATGCTTCC 51473 33 100.0 33 ................................. CCCGATGGTGCGCGGGCGGAATATAACCATGCT 51407 33 97.0 34 G................................ AGTGTGTGAGCGAGTCTCAAGCGTATGACTTGGT 51340 33 100.0 33 ................................. TTCTATTGATTCTTGCCCGCCTGAAATCAATAA 51274 33 97.0 34 C................................ CGAAAATCGGCGACAAAATCACGTTAGAGATGGG 51207 33 97.0 34 C................................ CTTTTTCTGCCCCGTCGCCTTGTCCGTGTAGTAC 51140 33 97.0 32 G................................ AATTATTAGCCAATACATCGGGCAACAACAAA 51075 33 97.0 33 C................................ TACGAAGGCTATTACCAGTTGGGACCTGACAAT 51009 33 97.0 33 G................................ TATAAAAATCGGTGCATTGCAAGTTGAAGAAGT 50943 33 100.0 34 ................................. AAAACGGCCAAACAATTTACTGCATATCTCGGCC 50876 33 100.0 33 ................................. TCAAACATGCCGACCGCCCCCGCATTACCCGCA 50810 33 100.0 32 ................................. TTGACTTCGCCATAGCTTCGTTGGACGACAGT 50745 33 97.0 33 A................................ AATCAAACCACGTTTTACTCTTGATATAGTCCA 50679 33 100.0 34 ................................. CAGGATATCGGTAAACGCCCTCGCCTCCGCCTCC 50612 33 93.9 34 G.....................C.......... TTTGAAGTGGCGTGAAAAATGTATTGGCGGCAAG 50545 33 75.8 0 .GT.A............AA....A.A..A.... | ========== ====== ====== ====== ================================= ==================================== ================== 61 33 97.5 33 TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACACAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGATGCCGAAGGACAGGCAAGGCTGAGACGCGTAGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAGCCGGCGGTCGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATAAGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGTGAGCCTAGCGAAATCGGGGCTGCTAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : GGTCGCCACCTCCTGTTTCGAAGAGGTGTCTTGATCTACCGCGTTCAAACAGCCATAGCCAACAAAATATCCTCGCTAAATGATCTGCTGTTTTGTCAATATTTGAGGCGGTGCGTATAATCCCCTTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCATACTAAAGTAAAGGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGACCATATGGAAATGCCTTCCCTGCATTCGCTGGAACACCTGATGGCTGAATTGTCGCGCAATCATTCCGATAAAATCGTGGACATCAGCCCTATGGGTTGTCAGACCGGTTTCTATATCGCCCTGCTGAACATGGGTGATTATGATGAGGTGTTGCAACTGATTGAAAATACATTGAAAGATG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.40, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16701-17434 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXV01000002.1 Neisseria elongata strain C2013018262 C2013018262_S38_ctg_1733, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 16701 36 100.0 35 .................................... GTTCTTATATGACACAAAGGCATGACGAGCTACCA 16772 36 100.0 34 .................................... ATTCGGCCAAATCCCAACCTTCGGCGCAATCCAG 16842 36 100.0 33 .................................... CCCTAGAAAAACAGGGAATCGCGGTGCTTCCAC 16911 36 100.0 35 .................................... AGGTCATCACCCATCAGTGCATGAGCAACACCTAC 16982 36 100.0 33 .................................... CAAGCACCGCCAGCTAAGTTCATAGCCAACGGA 17051 36 100.0 33 .................................... CAATAAATTCCGGCAACACTTTCGGAAACTCTT 17120 36 100.0 32 .................................... GAAGGGCCAGTAGCTTCGCCCACTTCTGACGA 17188 36 100.0 34 .................................... TAGGATACCTGTACCGGATTTGAAACCAAACTTC 17258 36 97.2 35 ...................T................ GAACCACGATGGGCGGGATATATTGCCCATTCAGA 17329 36 94.4 34 ...................TC............... CGTGCCGCAAGCTGCGTTACTTTCAGCTTCTGAT 17399 36 91.7 0 ...................TC.....A......... | ========== ====== ====== ====== ==================================== =================================== ================== 11 36 98.5 34 GTCGGAAGACTTGCCCCACCAATCGGGGATTAAGAC # Left flank : GGCAAGAACGAATGGCAGCGCAAACCGGTCTGACCATAGGCAATCAAGAGCACGCCATACTCTATCAAGAATGGAAGGCAGCCCTGCAAACCGCCGCAGAAAGCCCCGATTTGAGCGCAGAGCAGAAAGCCGAAATCGCCGCCGCGTTTGCCGTCAAAAAGATGATGGCAAAATACGCGAAATGGCTGACCGACAAGCGCGGCAAAGAGCTGAAACCCATCCTGGCGAAGCTGCGCGGCGAATAGATTTTCATCTTTATCGAGGCACTGGCTTTTCAGACGGCCTAAAACCGCAAAATAGTTAAAAATCGTTGTCGAATGCAAAGCAGACGGTTATAATCCGCAACACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGTCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATACTAACCTTTCTTAACTATATAGAAGACTGAAAATAATGAAATTTTTTGACTGGGTGCA # Right flank : CTCGTATATGTAGCCCTGTCCGCGTTTTTCGATAAGTCGGAAGACTTTCCCCTTATTGGTCTTCAGGCTTTTCAGACGACTTCAAACGTAGGCCGTCTGAAAATGCCGGAAGAAACCGGTGGTATCTAATAGCAAAATAGCCTTGATATTGCATCAAGGCTATTTTTGTTTGCTGCTGCTTTTCTATCGAATTTGTTTTACCATTTGGAGTCTCCAATAAAAAACAGCCTTTTCAGGCTGCGTATAAGGAAAAGGCCGCCGGAAGGCAGCCTGAAAAAAGAGGGTCAGACGGAAATGCCGTCCAGTACATGTGCAAGCTCTTCTCGCCGATAAACCTACCCGTCTGAAACACATCGGCAACAAATGTAACTGCCTGTGCGTGCAGCTTTGAACGGCTGGCATTAAAGCTAAGATGGTCTGTGCTGTCGTTGCGGTTGAAAGTTACTTTTTTGCCGTCTGATGTCGGGACTGTTTTACCTTGTAGGTTTTCGGACAGCCAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACCAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 23935-22782 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXV01000002.1 Neisseria elongata strain C2013018262 C2013018262_S38_ctg_1733, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 23934 36 100.0 34 .................................... CTAATATTCATACGCGGGGAAATATTCCCGATAA 23864 36 100.0 31 .................................... TCCAGTGCCTTTTTTGCCGCCCCCAGGCTTT 23797 36 100.0 33 .................................... ACCTAGCACATTTATTATCAATAACTGACATTT 23728 36 100.0 33 .................................... CAAGACCATCTCTTTTCATCTCCAATAGACGAA 23659 36 100.0 36 .................................... GGCTTTGTTTTAAGATAAAGTGGTAGTATTTTTCGT 23587 36 100.0 33 .................................... GGCTTCTTCGCGGAAAAACGGGTGGGTCTTAAT 23518 36 100.0 35 .................................... ACAATGAAATCCGTCTGACTGAGGTAGAAGCTAAA 23447 36 100.0 35 .................................... CCATGACGATCAACTCATCGCCGTCACCCAGTTTT 23376 36 100.0 35 .................................... TTCACCTTGATGCCTTTGGCGAAGTCGTATTCGAC 23305 36 100.0 33 .................................... GTGTTCCGTTCCAAACCATTGGTATTGGGAAAT 23236 36 100.0 34 .................................... CCATTTGTAATACTGCGTTTTGGCCGTGTTGGCA 23166 36 100.0 34 .................................... CTTACATTTTCAAAGGCTTCGGCGCGGGTCTGAC 23096 36 100.0 34 .................................... ATTTAATGCGCTAATGCAACCATCAATGTGTTAT 23026 36 97.2 33 ....................C............... GATGAAGTCGATCAGTTCGTCTGTATTGTGTAC 22957 36 97.2 33 ....................C............... GTAGGCGGGTTTTAAAATTTCGGGCATCGGCGG 22888 36 94.4 35 ....................T.............G. TTTCAGACGGCCTCAAGCCTAGGCCGTCTGAAAAT 22817 36 69.4 0 ..T.T..A..C..T...GT.T.........A..A.T | ========== ====== ====== ====== ==================================== ==================================== ================== 17 36 97.5 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : TGTTTCATAAAAACCAACTGATTTTTTGCGAACTCAAATCCGATTTAAGCTCCAAAAGCAAGCTGGCAGACCCGCTAAGGCAAGTGATCGACCAAAGCCTCGACATGGGCAAAGTGCGCCGCGTCCTGATTCTGTCGCCCGTCATTAAAGACAATGCAAAGCCGCAGCAATGGATAGAATTCGAGCGCAACTGCGCCGCCAAAAACATCCAAATCATCATCGCCCGCGACAAAGAAGCCCTAAAAGCCCTGACAAGCTGACATCAAGGTTTCTTGTCCATTGAAACGCCGTCTGAAAATGTTAAAAAACATTGTGAAATGCAAAGCAGACGGCTATAATCCGCATTACAAGTTTTCCGACGGATAGCAAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATGCCAACCTTTCTTAACCATATAGAAGATTGAAAATAATGAAATTTTTTGACTGAATGCA # Right flank : CAAACAGCCTTGATGGTTCGTTCCATCAAGGCTGTTTTTGCGTCGGGCGTATTGTCAAGCTGCCTGGATAATGCGGTATTGCCCGTTGCCGAATACGGTTTCCTTGCCCAAGTGCAGCCATTGCCCGATATACAGCATTTGCGAGAAGGCTGGCGTAAGGTCGGTCAGCTGCCATGTACCGATTGCGCCGCTAAGGGGCGTAATCTGCTTTTGACGGTTGGAAAATCGTCGGTGTTCGTGCCATGAAAGCCGGGGAAGCAGACCTTGTCCGCCGATTTGGGCGGACAGCTCGGCAGCGTTTGCGTTTTTGCCCCAGTGCAGATGGGCAAGCGTCAGATAGCGGCGCAGGAGCTGGCGCAGGAAAATAGCCTGTGTCAGCTCGGTTTCGCGCAAAATCCTGCCTTTTTGCCGGATACGTAGGGGAGTAAGCAACTGGATATGCGCTTGGGGGGGATAGCGTTCGGGCAGTCTGATATGGTTGTCGTGCAGCGCGATGGGGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //