Array 1 5379-3627 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSZ01000013.1 Listeria monocytogenes strain BCW_2372 PROKKA_contig000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5378 36 100.0 30 .................................... TGCTCGTCTGTGCGTTGTATGCCCTTTTCA 5312 36 100.0 30 .................................... GGCGTGCCGCGGTGATAAAAGAAGTGGCCG 5246 36 100.0 30 .................................... TGCTAAAATCCTTTGTGACGTCCGCGACCG 5180 36 100.0 30 .................................... TGAATTTAGTGCCAAATTTAGATGATGAAG 5114 36 100.0 30 .................................... TATGAGTGCAGGAAATGTTGCACAGAAAAT 5048 36 100.0 30 .................................... GTTTTTAGATGGCTAAAGAGCCCAAGCGGC 4982 36 100.0 30 .................................... TTCTATGACTTTGAAGTTTTCAAACATGAT 4916 36 100.0 30 .................................... GGCGAAAATTATCCAAAGCGCTTCAAATCT 4850 36 100.0 30 .................................... TTACAACATTATAAATAAAAAAAGACCTCT 4784 36 100.0 30 .................................... CAAATATTAAAGGTTTTTTGTCAACTATGA 4718 36 100.0 30 .................................... GGGAAAGAAGAAATTTATGTCATTGATGAA 4652 36 100.0 30 .................................... CGCACATTATTACAAATCCCTTCCGCACAT 4586 36 100.0 30 .................................... TGCTTTAACTGTAGCCTTTACACTACTTTT 4520 36 100.0 30 .................................... AAACTCAATTGACAATAAATATACAGGTTT 4454 36 100.0 30 .................................... AGCATCTATGCACCAGATAACCAACGCGAT 4388 36 100.0 30 .................................... ACATACGCATACAGGTTTATGTGTGGAGGC 4322 36 100.0 30 .................................... CGCTTGATGTTCCCCCTCTGAAATATCAGA 4256 36 97.2 30 ...................................T TTTTAACGACTTTCGTTCAGGTCGAATGTT 4190 36 100.0 30 .................................... AGATTATCGATTCTTAGAACATACACACCT 4124 36 100.0 30 .................................... TAATGTCATTAGATTTTTTAGATAGTGTTA 4058 36 100.0 30 .................................... TCGCTTATAATCACATGATGATATAGCAGG 3992 36 100.0 30 .................................... TTATAGAATTGAGTTGAATTTGACCCATGT 3926 36 100.0 30 .................................... TTATAGAATTGAGTTGAATTTGACCCATGT 3860 36 100.0 30 .................................... TTGCTCTGTTTTCAATGATGTTTGGGAATG 3794 36 100.0 30 .................................... AATAGTAAATGTAGATGGTTCGACGGTAGA 3728 36 100.0 30 .................................... CCACTTTAAGCCCTCAGCACTAACAAACCA 3662 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATTTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGACAGATAAAAGGCTCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGCATTTAACTATCGAAAATCTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCGCTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGGTTTCCCAATCCAAGAAACCTCACCAGCCCAAATAGATCCCAAATACGTACATAAAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 361413-360863 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSZ01000010.1 Listeria monocytogenes strain BCW_2372 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 361412 29 100.0 38 ............................. GAAAAAAACGGCGAATCTGTAAGTATATGGGTAGATGC 361345 29 100.0 37 ............................. AGATACAATTCTTTGTTTGAGGCAAATTCTCTATTTT 361279 29 100.0 36 ............................. TTCGTAGTTTTGAACTCGCAATAACCGCTTTCGTAT 361214 29 100.0 37 ............................. CGGGTCAATGATGGTAATTTGGTCGTTGTCGTCTTCT 361148 29 100.0 35 ............................. TCTGTTTAAAGATAAATGCTGTAGAATGCTTCATT 361084 29 96.6 35 ..................A.......... GTAGTAGCTATTAAAGATAAGGTTTGGAAGGAAGG 361020 29 93.1 35 ..........T...T.............. TATTTTGAAATATCTAAAGCTATCTCACTGTTTAG 360956 29 96.6 36 ..............T.............. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATAG 360891 29 72.4 0 T.....A.......TCA.AG...A..... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 95.4 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGTGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGCAAAAAACACCGGGAATCGACAGAAAGTTGTAAGTGGTTGGAAGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCTTCATATACACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGTTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGTTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTGTTTTTCACTAGTTTTAC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //