Array 1 12452-13522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPB010000019.1 Listeria innocua strain FSL L7-1726 NODE_19_length_20658_cov_41.415810, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 12452 36 100.0 30 .................................... TTTCGTTGTTACTTGTTGATTAATGGGATC 12518 36 100.0 30 .................................... ACCTACTGAGCCTAACCATGCTAAGAAACG 12584 36 100.0 30 .................................... ATATTTTTGTCGGTTTCTTTACAGGTGATT 12650 36 100.0 30 .................................... TTTAAGGAGGGGACAACATGACAAAGCAAA 12716 36 94.4 30 .............................A....G. AGAACTATTGCTTCAGTTATAATAGATATT 12782 36 97.2 30 .............................A...... CAAACGTTCTAAAATGGTTGGAGGATATAA 12848 36 97.2 30 .............................A...... TACAACATCTGATAATAGAGCGAAATTGTT 12914 36 97.2 30 .............................A...... TGATGAATTGGGTGAAACAGGATTTTCAAA 12980 36 91.7 34 ................T............A.....T GAAAAGAAAGTTGGATGTTTCACTTGATGTTATT AT [12997] 13052 36 80.6 27 .......G...G...............A.A...GCT ACCTTTAAAGGCTTCGATGATTAAAGC G,G [13073,13082] 13117 36 88.9 29 ........A......A.........A...G...... AGATTAACGTGTAGAAGAGCCCTAGCAAT 13182 36 91.7 28 .............................G....TT TTATTCAGCACCAGGATTAGAAAGGCAC T,TT [13196,13200] 13249 36 91.7 137 ..............C..........A...A...... AAAAAAGATGTTAGAAGAATGAAAGTTCGATTGATTTTAGAGCTAAGTTATTCTAACAGTACACCTATTTATAAGAACTGAGCTATGTAATTTTTATACTTAGCAAACTATGGTAAACCGTTATCTCTTAGGAAATG 13422 36 94.4 29 .........T....C..................... TACTAATTTGAAATCTATTGTGGAGTGTT 13487 36 83.3 0 ..............C..........A...GT..GG. | ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 15 36 93.9 38 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTGTTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGACGATATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTAGAAAGATAAAGGGATTTTCGCAGGTTATCTTAGATTCAGATTATTTTTTACAAGTGGAAAATGGAATGTAAGTATCCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGGATAGAAAAATTCTACGAG # Right flank : CTAAAGCTTAGGAGATTATATGGACAAAACAATGAGCCCTATAAAGTGTTTTTTTAGTGAGCGGAAAATAAATATGTATCGCTTCTATACATACTCAAGAGATGAAATTAAAATATAGCATCAAAAATCATCCTGAGTAATAAGCCACTGTAGACTTTGGTTCCTTGTCATTACCTTTTAAAAAGTTTTTTCTTTGTCGTTTATCATCTACTTCTTCAAATTCTGCGTTTACTATGGCAAGTTAATGCAAGCTCAAACGAGGATAGGCTAGAGCTTAGCTTAATTGTGATTCTAATTTCATTCAACAAGCATGATTAGTACATCAAAAACATGGGAGAGAAAAAAACAACAGAAATCCTAGGGAATTTAAGTAGCGTATTGTTGATGGTTAGGTCTGTGTTAACTGGATTTAAGAGAAAGAAATATATTCGTAATGGATTAAGCAAAAAAAATAGCCAATCTACTCTGAGTTAGTACAAGAATAGATTGGTTATTATAAT # Questionable array : NO Score: 4.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.68, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.53%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //