Array 1 634280-637481 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031545.1 Streptococcus thermophilus strain ST109 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 634280 36 100.0 30 .................................... AGGCCTAATCGCTTGTATATCAACGGAACT 634346 36 100.0 30 .................................... AATAAGAACATATGAAAGAGAGATAACATG 634412 36 100.0 30 .................................... GTCAAATCCTAGTGATAATCTGTTTGCTTC 634478 36 100.0 30 .................................... GACCTATGCTGGTCAACTCACAATCATGCT 634544 36 100.0 30 .................................... GCTAAGTACGTCTTTAATAAGTATGAGTGG 634610 36 100.0 30 .................................... AAAGGTGGCTTGCTTTCTGATGAAACTATA 634676 36 100.0 30 .................................... TGCAAACAAAGAAGTGTGACCGCTTTCATG 634742 36 100.0 30 .................................... ATTTTGACAGGATTGGGTGGTCAAGTATCG 634808 36 100.0 30 .................................... AGTCAATGGTGGATCTGTGGATGATACCAT 634874 36 100.0 30 .................................... GAGTACATGGAGTTTCTGCTAGATACACTA 634940 36 100.0 30 .................................... TTCGTCATCGAAACAAGCTACTGCAAGGTT 635006 36 100.0 30 .................................... CATCATTAATGATGGTGATAATTTAGTAGA 635072 36 100.0 30 .................................... AGATTAAGCATCACACCACTATCTTTTCCT 635138 36 100.0 30 .................................... ACTGACGCTTAACAATATGTACAACTTAGA 635204 36 100.0 30 .................................... GCGTAAGGGCCGTGATTGGAACATGCCTAC 635270 36 100.0 30 .................................... CAAAATGACGATAACTGGATACGTAAGGAT 635336 36 100.0 30 .................................... GTTATAGCCAACAGCAAGTACCAAACTTTG 635402 36 100.0 31 .................................... ATCGACGATTGGGAACCGTGGAAGGAATTTG 635469 36 100.0 30 .................................... TTATATCGAAGAACGACTGAAAGAGCTTGA 635535 36 100.0 30 .................................... AATCATTCGGCAGACAACAAATATCACGAC 635601 36 100.0 30 .................................... TATCAAGATAATATGTGGGACTATGAGTTT 635667 36 100.0 30 .................................... AGTGAGTCTGCTGTTGTACCAAGGGGAAGC 635733 36 100.0 30 .................................... TCTAACCTATATCACTAATGATCCTTATCC 635799 36 100.0 30 .................................... CATCGAGCTTATCGCTAAATTATTCAAAGA 635865 36 100.0 30 .................................... TTGTTTTATTTTATCTTGAATGTCGTTCGC 635931 36 100.0 30 .................................... TTAAGTTAACAGACTCTTTAAAACTTTGGA 635997 36 100.0 30 .................................... TACGCTCGGAGAAATGTTTGGTCGGCTATA 636063 36 100.0 30 .................................... TTGCTGACGGGACTGGCTTTTTTAGTTCAT 636129 36 100.0 30 .................................... TACACTAATCAACGTCATTTCTAAACTGTA 636195 36 100.0 31 .................................... GCTTTTGGAGTTGACCAGGCCTGGTTAGATG 636262 36 100.0 30 .................................... CCAAAGAGTGTAATTGCTTAATTAAAAGAA 636328 36 100.0 30 .................................... GTTCTAATTTGAGGAGGGTTTATGGATGTT 636394 36 100.0 30 .................................... TTTCTCGTTTAATGTTCCGTCACCACCAGC 636460 36 100.0 29 .................................... AATTCTGCGACGTCGCACAATTTAGTGTA 636525 36 100.0 30 .................................... CGCATCTGACTTTCTTGTGCTTTCCATGCG 636591 36 100.0 30 .................................... TTGGTTTTTACAAGTAAATTCCTACCGCCA 636657 36 100.0 30 .................................... TGACCTGTTTATCCTTGTTAACAAGAATAG 636723 36 100.0 30 .................................... CAAACTAAAACGAGCATAGAATATCTTAAT 636789 36 100.0 30 .................................... TACCGAGAGATGCTCGTCAATGCCATGCTC 636855 36 100.0 30 .................................... CTAAAACAGTTAAAAGCATTAGACAGATAT 636921 36 100.0 30 .................................... AAATTTGGAAGCTCCTAAATTTCTCAACGT 636987 36 100.0 30 .................................... CCAATGTATTGATAGCTGTACGAATATCTT 637053 36 100.0 30 .................................... TTCTAACTGTAATTGATACAATCCACCATT 637119 36 100.0 30 .................................... TGCTTGGTAGTTGATGCACTGCATTAGTAA 637185 36 100.0 30 .................................... TAACATTTCTGTCCATTTCTTCCTTGATGC 637251 36 100.0 28 .................................... CAAGGCAACTCAACCAACCAAATTGACC 637315 36 100.0 29 .................................... TTCTATTTAATTTGAACTGAACACTTAAA 637380 36 100.0 30 .................................... CATCATTTTCTGTTTGTGCTCTTGTGAGAC 637446 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 49 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGAAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAATGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1322103-1321671 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031545.1 Streptococcus thermophilus strain ST109 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1322102 36 100.0 30 .................................... TGCTTCCGTCCCAATAGAATCATTTTCATA 1322036 36 100.0 30 .................................... CAACTAAACCATCTGTATCTGTTAAATTTG 1321970 36 100.0 30 .................................... CCCATCCCTTAAAATTGACGTAAAACGAGT 1321904 36 100.0 30 .................................... TGGCTATGATAATGAAAATGGCCATTTCTA 1321838 36 100.0 30 .................................... GTCAAATACCATCTTGTTGTTCTCTATTTT 1321772 36 100.0 30 .................................... CCAAGGGATTCAAGGACCACAAGGCCCTCA 1321706 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //