Array 1 1148646-1147752 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053074.1 Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1148645 36 100.0 30 .................................... ATACTACTCTTGCTGAAGTCCCAAAAAAAT 1148579 36 100.0 30 .................................... CACCAATGCTCAGTTTTAAACCAGTAGCGT 1148513 36 100.0 30 .................................... AAGTCGTGATGCTATTGATACAGCAGAGGT 1148447 36 100.0 30 .................................... TAGGCAATCGTCCGCAGATGCTTGTATTGA 1148381 36 100.0 30 .................................... TAGGCAATCGTCCGCAGATGCTTGTATTGA 1148315 36 100.0 30 .................................... AACTCAAAACTTAAAAACACGTAAAACTAT 1148249 36 100.0 30 .................................... AGTCTTTTTGGCAGCGGGTTTTACCTATCT 1148183 36 100.0 30 .................................... AACTGCCGCTGGGAAAACGACCGTTGGTGT 1148117 36 100.0 30 .................................... GTACGATAGGCAATTTCTAAAACGTGTAAA 1148051 36 100.0 30 .................................... GCAAAGATATGCGCAAGGTCGGACTATTGT 1147985 36 100.0 30 .................................... GGATAAGTAACTCCGCATAGCCACTAGCTG 1147919 36 100.0 30 .................................... TTTCAACGAGTGGTCTCCATTTTTCAACTT 1147853 36 100.0 30 .................................... CCTTTGGGACGTTATCCTCATCCAAGATGT 1147787 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : TAGTTAAGTGAATAGGTTACACTAAACTAGACAGAATTTATAAAGTGTTCTACACTAAAGAAAACAGGAGAACAGATATGTCTAGAAAAATACGTCGCCACTTCACCGATGATTTTAAGCAACAAATTGTTGACCTCCACAATGCTGGAATGAAACGAAGTGAGCTTATCAAAGAATATGAGTTAACGCCCTCAACCTTCGATAAGTGGGTCAGACAAGCCAAACTAACGGGTTCCTTCAAGTCTGTTGATAATATGACAGATGAACAACGGGAACTGATTCAACTCAGAAAACGCAATAAAGAACTCGAAATGCAATTAGATATCCTAAAGCAAGCGGCAGTGATTATGGCACGAAAAGACAAGTAATCACTGCAAACAAGGATAAATACAGCATTTCAGCCATGTGTCGTTGGTTGAACATTCCTCGTTCAAGTTATTACTACCAAGCTGTAGATCCTGTGTCAGAGGCTGAACTCGAGGATAAAATTACCTATATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1503213-1502323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053074.1 Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1503212 32 100.0 35 ................................ AATACTTTGAGGGCAGAACAGGACTTAGAACTAGA 1503145 32 100.0 34 ................................ AGCCTTGCGACTCAGACACCGCTAGTCTAAATCG 1503079 32 100.0 33 ................................ CCATTGCTGAAGAAGTGTCGATATTTTCTTTTA 1503014 32 100.0 34 ................................ TTTGTCACTAGATTCTTTAAACTCCTTTATAAGA 1502948 32 100.0 34 ................................ AATCTCATTCATCTTTTTGGCATTGTTTTTTGCT 1502882 32 100.0 34 ................................ TTTTATAGCAAACTTTTTATTAGGTGTTAGAACA 1502816 32 100.0 33 ................................ CATCCATAAAGGCAAGGTTCGTGCTTCCAATGA 1502751 32 100.0 34 ................................ ACTTGGACGAGTACAGACCCCAACTCTTTATATG 1502685 32 100.0 34 ................................ GATAATCTAGGGGATTTGATGCCATGACGGAACT 1502619 32 100.0 34 ................................ TACCCTAACAGGTACACAACCAGTTACATTTACT 1502553 32 100.0 34 ................................ GCTATTCTTATCAAAATTTAAGTAATTTTGGTTA 1502487 32 100.0 33 ................................ ATCGCAATTGCATCAACTTGAATATCACTGTCA 1502422 32 100.0 36 ................................ TAACTCTGTCATTTCCCAATTTTTAGTGAGAATCAC 1502354 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.3 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTGTCCAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACATCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //