Array 1 100777-100198 **** Predicted by CRISPRDetect 2.4 *** >NZ_BICJ01000002.1 Escherichia coli strain 26-C77-A entry2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100776 29 100.0 32 ............................. GCCGCCTGCATTAACGATAACGTAACAAAGGA 100715 29 100.0 32 ............................. GATTACAATCCAAAGGGTCATTGAATGTTGTT 100654 29 100.0 32 ............................. GACTCGGGCGGAAAATATTCACCGAACGCTGG 100593 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 100532 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 100471 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 100409 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 100348 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 100287 29 100.0 32 ............................. TTCCAGCAGTTCAGCGTAACACCGACGGTCAC 100226 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128645-126481 **** Predicted by CRISPRDetect 2.4 *** >NZ_BICJ01000002.1 Escherichia coli strain 26-C77-A entry2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128644 29 100.0 32 ............................. ACATCTGGCCGTATTTATACAGGCTGGATGAA 128583 29 96.6 32 ............................T GGTTATATTTTCATCGTAGCTAATGGGTTTAA 128522 29 100.0 32 ............................. AATAGTGCCTAGGTTGTACCATTTTTGATGTT 128461 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 128400 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 128339 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 128278 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 128217 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 128156 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 128095 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 128034 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 127973 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 127912 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 127851 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 127790 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 127729 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 127668 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 127607 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCATG 127546 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 127485 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 127424 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 127363 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 127302 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 127241 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 127180 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 127119 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 127058 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 126997 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 126936 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 126875 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 126814 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 126753 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 126692 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 126631 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 126570 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 126509 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCTACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //