Array 1 25050-22154 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTK01000029.1 Streptomyces griseostramineus strain JCM 4385 sequence029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25049 29 100.0 32 ............................. GCGGGAGCCGCCGCGGGTGGGTTCGTCGGGGG 24988 29 100.0 33 ............................. TCGACCCCGGCCGTCGCCGGGGTGAGCCCCCAG 24926 29 100.0 32 ............................. GTCGGGGCCGCGGCCGGCGGATTCGTCGGCGC 24865 29 100.0 32 ............................. CGGGATGAGTGCGGCCCACGCGACGAGGGCGA 24804 29 100.0 32 ............................. GGGAGAGCGGTGCCGGGGCGGGGGATCTCCAG 24743 29 100.0 33 ............................. CGACCCGACGAGCATCGGGCAGGGCGGCGGGGT 24681 29 100.0 32 ............................. TCACTGAGACTCGGAACGGCTCGGCAGGACTC 24620 29 100.0 32 ............................. GTCGCGGGAGATCCGTGCGAGTCTGCCCATGC 24559 29 100.0 32 ............................. TTTCCCTACTAGATCAAGCCGCCCGCACCGCG 24498 29 100.0 32 ............................. AGGGTCTCGCCCCTGAAGACGCGGTCGAAGAT 24437 29 100.0 32 ............................. AGCGGCTCGTACTGCCAGATCAGGCCTCGGAG 24376 29 100.0 32 ............................. GCGGCGACCGAGGTGGCCCCGCTGTGGTCCAA 24315 29 100.0 32 ............................. CTCGCGATCGGCGGCGAGCACGTGACCGCGTG 24254 29 100.0 32 ............................. CTGGCCAACTCCAGCGACCCGGCATGGGACCG 24193 29 100.0 32 ............................. GGTTGTCACCGAGCCGATCCATGACCTCTACC 24132 29 100.0 31 ............................. AGCGGCGCGAGCAGCAGGGTAACTGGACGGC 24072 29 96.6 32 ....................A........ AACTTGAAGCCTTCGACCGACAGACCGAGCTC 24011 29 100.0 32 ............................. TCGATCCCGAACAGCCAGGCGCCGCCGGCCAG 23950 29 100.0 32 ............................. TCCCGGTACGACAGCGGCGGAGTCTCGCTGTC 23889 29 100.0 32 ............................. GGGCCGTCGTCCTGCTTGCAGCGGAGGCAGCG 23828 29 100.0 32 ............................. AGCCACACGACGCGCAGCCGGTCACGCGGGTG 23767 29 100.0 32 ............................. TCCTGCACCTCGTCCACGTAACAGAGGTCACC 23706 29 100.0 32 ............................. GAAACTCCGCAACTCTCGGACATTCGTGGGAA 23645 29 100.0 32 ............................. GCGTCCGCGCGGTCCTGCGACCAGCGCGTCTC 23584 29 96.6 33 ............................A CGCCTCGAACGTGTTGCTGTATCCGGTCTGGCT 23522 29 100.0 32 ............................. GCTCGCGATTGCGTGTTCGAGATCGAGTCCGC 23461 29 100.0 32 ............................. CGCCTGCGATTGCTGGGGTGTGCATGTGCGTG 23400 29 100.0 32 ............................. CACGAAACGGCGTCTCTGCTGTCTGGTAGAGG 23339 28 96.6 32 ........-.................... TACGACGACATCCGGCTCGCCCTCCAGGCCAG 23279 29 100.0 32 ............................. AACGGCGACTCCCTGTCCCCGATCGTCAAGCT 23218 29 100.0 32 ............................. TCGACCAGGGGCACGCCGCCGAGGTCGTGCGG 23157 29 96.6 32 ..............T.............. GGCGCGTCACACCACGGGCCTTCGCCGGCCAC 23096 29 96.6 32 .........................G... ACCCGGCCCGATCGGTGCTTGGATCGACCCAG 23035 28 96.6 32 .................-........... GTTGCTTTCGGCACGGTCACGATCACACCGGT 22975 29 100.0 32 ............................. ACCGGCGAGATCACCTACAACGGCCGCACCTA 22914 29 100.0 32 ............................. CACATCCAGCTCGGCTCGACGTCCTCGGACTT 22853 29 100.0 32 ............................. GGCTGCTCGGCGATCGTCAGGGAGGTGAAGAA 22792 29 100.0 32 ............................. CATTCAGGGCTTTTGAGGGTCCAGCATCGGCT 22731 29 100.0 32 ............................. ATCACGGCGGCGCCCTCCTTCCTGGTCAGACG 22670 29 100.0 32 ............................. CCGATCCCGCCGCCGTCGACAGCGACGCGCCT 22609 29 100.0 32 ............................. GCAGGGCTCGCGGCAAACGCGGACGCTCGCTC 22548 29 100.0 32 ............................. GGGGATGCCGGCGGTCTCGGCACGGCGGATAC 22487 29 100.0 32 ............................. GAGGCGGGCGCCCAGTTGCGGCGACCTCGAAT 22426 29 100.0 32 ............................. CCGCTGCCCGAGCTGCGGGACGTGTACGAGAA 22365 29 96.6 32 .................A........... CCGGCCGGCGGGGGCGCGACCCTCACCTACGG 22304 29 100.0 32 ............................. CAGATCACGCACGCGTCGGATGCGTGGCTGGC 22243 29 93.1 32 .........................C..T GTGCCGGGCGTTGCTGCGAGCCCTGGGACAGT 22182 29 82.8 0 .........A...T...A.A..G...... | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGCGGGAGTGGCCTTGCCGATGTCGTGCACGCCGGCAAGCCATACGGCGAGGGCGCGGGCATCCGGCTCACCCCGCGGCAACGCCCCGGCCACCAGCCTCCGCACCCCTATGGGCAGCCATCGGTCCCACAACAGGCTGGCCACCGCGGCGCTGTCCTCCATGTGCCGCCACAACGGCAGCCACCCGTCGGTGTCACGATCATGCTTGGCCCACACCGACCGAGCCGGCCCCCCGAGCCGACGTAGCAGGCCGGAAGGGGCACTCCCCCCATTGCTCATGAAGGATTGATACAGGGAGAGCCCGGCTCCGCACACCAAAATGGGCAAACAGAAGCGTTTACAGGAAGACAGCACTCCCAAGAAGTACGGTGATCGGCTCACCATCGATCCATTGAGAAGCACCTCCGAGACTGAAAAGCGCCGTATGGCCTATTTGCCGGAATCTGCACAAGTCCCCGAAAGCACGCCTTCCCAGCAATAAACTCGCAGGCCAGACAGT # Right flank : TTCGAGTCTGTTTGACAGCCGTTGGGGCAGTTGATCATTTTTCCCCGCATCTGAAGTACGGGCATTGGGGTTCAATCTCGTTCTGCCTTGATCCATTTATGTCAGGTGGCGGCCATCCTCTGCGCAGTGTCTGTCTTCCAATATGCGAGTCGTATAACGGCGTGCAGTCTGTACTCATGTTCAGCAGTAAGCACTGCACCCTTTCCGCGAGGCGACTGCACGCGCGATGGGCGAGCCGCCCTTGGGTGACCTTGTGTGCATCCACCTCCGGACTCGGTTCCCCGGGGCTTGCGGGGATGGCCCCATGCGGGTCGTCATCCAAAATTGCTCCCCGCGCATGCGGGGATATGACCAGAGAAGTAACAGAATGTGCTGACCTGCAAGCTGGTGGTGAGTGGCGCTGGTCCGCTTCGGCACCCGATATCAACCGCGCTGCTGGCAACTGGTACCCAAGTTGGTACCGCCCCAGGTACCCTGCTGGTATGCCAGCACTCAATATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34756-36809 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTK01000029.1 Streptomyces griseostramineus strain JCM 4385 sequence029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 34756 29 100.0 32 ............................. GTCGCGATCCCGGCCGCGACCCCCTGAGTCGG 34817 29 100.0 32 ............................. CAGTGGCCGGGGCCGCAACAGGCTGACGGGCG 34878 29 100.0 32 ............................. GCCATGACCGACCCAACGGAGACCCCTCGTCG 34939 29 100.0 32 ............................. GAGGGTGCCGGGTTCACGACGGTGGTGTACGA 35000 29 100.0 32 ............................. CTCCTTCTACAGCGAGGAGGAACTCAGGACGT 35061 29 100.0 32 ............................. CGTTCGTGTCCGGTGTCGCGGGTGTGCTCGGC 35122 29 100.0 32 ............................. CAGGAGAGCCGCCCCGAGCTTGGGGTCGCGGT 35183 29 100.0 32 ............................. GTCAACTGGTTCGACGCGAACTCCGACTACCT 35244 29 100.0 32 ............................. GCGTCCGCGATCGTCGGCAGCACCGGCACGAG 35305 29 100.0 32 ............................. GCGCCGTCGTTGTTGTCCATCGTGAGCGTGCA 35366 29 100.0 32 ............................. AGGATCTCCCCCGAGCACACAGCGGGACCCGA 35427 29 100.0 32 ............................. GCTTGCAGAGAGTACCGGCGTGGTGACAGGAG 35488 29 100.0 32 ............................. GTCGATGCCTGAGGAAGAGCCCTCCGGAGCGG 35549 29 100.0 32 ............................. GAGGCCGGAGTCGACCTCGCGGGTGTCCGGCT 35610 29 96.6 32 ............................A TCGTCGGCCAACTGCTGACCGAGGCGCAGTTC 35671 29 100.0 32 ............................. TACGGCCCGCTGCTGAGGATGGGGCTCCGGCT 35732 29 100.0 32 ............................. CGGCCGCAATCGCGATCGAGCTCGAGCGCATC 35793 29 100.0 32 ............................. GCGTCGACCGGTGTCGCCGTTGGTCCGGTCCG 35854 29 100.0 32 ............................. TGCGGGTCGGCCATGGCCTCGCCAAGCTGCAC 35915 29 100.0 32 ............................. GATACGCGAGGGCGCCACCTCGAAGGCGACGC 35976 29 100.0 32 ............................. GATACGCGAGGGCGCCACCTCGAAGGCGACGC 36037 29 100.0 32 ............................. GACGACCAGGAGCCGAGCCCGTGAGCAACCCG 36098 29 100.0 32 ............................. CAGCGGCAGGAGCCGTCCGCGAGGGCGGCGAG 36159 29 100.0 32 ............................. GATACGCGAGGGCGCCACCTCGAAGGCGACGC 36220 29 100.0 32 ............................. GATACGCGAGGGCGCCACCTCGAAGGCGACGC 36281 29 96.6 44 .......................A..... TGTCCCTTGTGGTCCGCAAGCACCTTCTGAGAGGCCTTCGTGCT 36354 29 100.0 32 ............................. CAACGGCGCGTCGACTCGCTGAGCGTGCCCCC 36415 29 100.0 32 ............................. TGCGTCACCGTGCCGTCCGTAGCCGTGTGTCA 36476 29 93.1 32 ...........G.T............... ACGTCAACAACACCGGCGGCGCGGCCCCCGGC 36537 29 96.6 32 .........T................... AACGCCTTCTGTGTGTCCTCGGCCTTCGTGCC 36598 29 96.6 32 ...........G................. GTGCCCAGCACGTGCTCGGGGTGGGCGAGGAA 36659 29 93.1 32 .................A.......C... TGCCGCAGTCCGCCGGGCGGGTACAGGCCGGT 36720 28 96.6 32 .....-....................... GCCCAACCGGTCTGGTTGATGTCCCACCGGTA 36780 29 96.6 0 ...........G................. | C [36805] ========== ====== ====== ====== ============================= ============================================ ================== 34 29 99.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCGTCAACCACGACGGACCCGACGACTACGGGGATGCGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGCCTGCGCGGCTTCCTCACGCGCTGGCTGCTGGAGATCTCCGCAGGCGTGTTCGTGGGCAACCCCTCGGCCCGGATCCGCGACGTGCTCTGGGAAGAGGTCCAGCAGTACGCGGGACAGGGCCGCGCCCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGTACCCACGACCACGCCTGGCACCCGACCGACCACGAGGGCGTCACCCTGATCCGCCGCCCCGACCCGAACGCACCCGCTCCCGGCCCAACTCCCCAGAACGGTCCACCACCTGGCTGGAGCAGGGCCGCCAAACGCCGACGCTTCGGGAGGGGCTGATACACATCGAGCCACTTATGCCCTATTTGCCGGAACCGAAGAAAGTACTCGGAAACGACCCCCAGCGCCAGTAAAGCCGCAGGTCACCCAGT # Right flank : CGAACCAGTCGCGCCCGACGTGGTCTCCCTGGTCTTCGCCGGACCCTCGGACGCGGGGCTCTGAGCCTGTTCGGCCTTAGGTCACATACCGGTACGGACACCGTCGCCCGGCTGCCGGTGCCCGGCCTGTTCACGGGTCTGCCGGGCTCGCAGTGCGCTCTGTCGCTGCTCCTGCTGCAGCGCCGCAGTGCGGGCCGCCTCGTCGGCCGCGTGCCGCTGTGGGGCCTGGGCGCTGGTGTGGCGGCGCACCTGCTGCTCGGCCTGGAGCTGCTCGGCAGCCTCGCGCAGATCGCGGGCCTTGGTGTGCAGCGCGACGGCCTCGAGGCGGGCCTGCTGGGCGGCTTCGGCGCGGGCCGTGTCGATCTGTGCGGCCAGCGTGGGCAGGTGGGCGTGCATCGCGGCGAACCGCTGCCGCATGACCGCCGGATCGTCGGGGGCCTCGCTGAGCGCGCCGTGGGCGCGGAGGGCCTCGGCGTACGGGGAGGTGCGCAGCGTCTGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15886-18293 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTK01000041.1 Streptomyces griseostramineus strain JCM 4385 sequence041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15886 29 100.0 32 ............................. CTGGACCCGTTCGCCGCCGCCATGTCCGAGGC 15947 29 100.0 32 ............................. GTCGACCGTGCCCTGCACCAGATCGGCCGCCA 16008 29 100.0 32 ............................. ACGCTACGAAGCGCGCGAAACGCTGTGGGAGG 16069 29 100.0 32 ............................. CGGGACCGGCTGCCGTTTGCGCCAGACCTCGA 16130 29 100.0 32 ............................. GGCGCCGTCGTCGTCGACCTGTACCGCCCGGC 16191 29 100.0 32 ............................. GCGGGCTGCGCGTTCGAAGCGGGGGTGATGGT 16252 29 100.0 32 ............................. TACACGCTGGACGGCGCGCCCTACGTGCCGAC 16313 29 100.0 32 ............................. GGGTTCCCGCCGGGGATGACTCCGGGCCGGCT 16374 29 100.0 32 ............................. GCGGTATGGTCGGCGCCCTTCACCAGCACCGG 16435 29 100.0 32 ............................. TCGCCTGAGCACGCCGCCCGCGTCGCCGAGCT 16496 29 100.0 32 ............................. CTGGGCGACGGCGAGGACCCGTGGCCCGAGGT 16557 29 100.0 32 ............................. TCGGGGTTGACCTGGTCCATCGAGCCGTCCGC 16618 29 100.0 32 ............................. GTCGACGTGGTCGGCGTCGACCTGGACCGTGG 16679 29 100.0 32 ............................. GATCGGGACCGCACGCCGGGGATGCCGGTGAC 16740 29 100.0 32 ............................. CATCTGCTGCCGATGGCGACGTCGTCGATGAG 16801 29 100.0 32 ............................. GACAACTTCGACGAGTTCCCGGCCGAGGAGAT 16862 29 100.0 32 ............................. TCCTACAAGGCCGTGGACCAGGACGTCCGCGT 16923 29 100.0 32 ............................. CCCCGATGAGCGTCACGATCCCCGGAGCCCTC 16984 29 96.6 32 ..............T.............. GCGACCGCGCGGGACCAACGGCTCTCGTACCT 17045 29 100.0 32 ............................. ACGACGCGGGCCTCCGTCGGCGACTCGACCGC 17106 29 100.0 32 ............................. TCGATTCGCTCGATCGCGGCGATCATGCCGTC 17167 29 100.0 32 ............................. GCGGCACGCGAGTACCGGCCCCGCCCCAAGCG 17228 29 100.0 32 ............................. CCCCAGAACGTGGCGGCGTTGGCGGCGAGCTG 17289 29 100.0 32 ............................. AGGGGCGGGTCGTCGTCGCCCTGGATGCGGAA 17350 29 100.0 32 ............................. GCGACGGTGGCCGCGTTCGTGGCCGCCGTGCC 17411 29 100.0 32 ............................. CACAGGTCCACCTGCTGCACGTCGATGTCCCG 17472 29 100.0 32 ............................. CACCCCGCCTACGCCCTCGCCGCACGACTCGG 17533 29 100.0 32 ............................. GGGAAGCGGTACCGGCTGGAGACCGTACGCCG 17594 29 100.0 32 ............................. CCGGCGTGGGCGGACAGGCCCGTCGTGCCGAT 17655 29 100.0 32 ............................. GACACGGGGGCGATCGTCTCGCCCTCGATGAG 17716 29 100.0 32 ............................. CGTCGTACACCAGCACCTTCTGGCCGACGTTC 17777 29 100.0 32 ............................. CAGCTGTGCCAGCGGAACAGGACCTCCGGGCA 17838 29 93.1 32 .................A..........A CGGGTGCGGGGCACCAACTTCACCGCCGGCCG 17899 29 100.0 32 ............................. AGCGTTGCCGACACCATTGGGCAGACGACGTC 17960 29 96.6 32 .........................C... GAGGTGACGTACGGCCGGGTCTTTCCGTTGGC 18021 29 93.1 31 .................A.......A... GTAGGGGTCTCGTTATACGGCGTGTAATTTC 18081 29 89.7 32 .C.....................AA.... CGGTTCGGGTAGACCCCGCAGTCGAAGAAGAC 18142 29 96.6 31 .........A................... GGGCCGTACGACTGGGTGAAGGTGTTGCGCT 18202 29 79.3 32 ...T.A..T......A.A.........T. AAGCCATCGCTGATGGTGAGGATCTGCACCAC 18263 29 82.8 0 ............A.T.......A...A.G | GC [18285] ========== ====== ====== ====== ============================= ================================ ================== 40 29 98.2 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGCGGAATCCGACACGGCTGGCCCTTTCGGTGGAGTGGTGCGGGCGAGGAGCAGGTACGGCTGAGTGCGATGGACGAGTGAGGAAGAGGTCGGCCGTTCAAGGCTATGCCGTGTCCGGCGGGAGCAATGCGCCTGCCGTCAGGCCGGCGGTCAGGAGGCCCGTGTACTCCTGAGCCAGGTCGGCGGGCCGCGGCGCGCAGTTCGCCTGTCGCCGGTGCCACCGGGTGATGAGCGAGCCCCGAGCGCCGAAGCGGTATGCGCCGCTGCTGCTTCAGGGTGCTGTCGAAGCCGGGGTGGTGGGAGACCGACGACCGCTGGTGACGCGCAGCGTCCCGTACCGCGGTTCTTCGGCTGCGTAGCAGTCCCGTTGGTCCGCCGGTGACTGTAGCGTGGTTCGGCGCACCCAGAACCGGAGCCAGGATCTTAGGCGTCATTTGTCGGAATCTGCAAAAGTCGCCGAAACCGTGCTCGGCTCGAGATAAACCCGCAGGTCAGCAAGA # Right flank : GCGATCAAGGTTGAGCTGCGGCAGCGGTGGCAGTGGGTGGAAGCGCGGATGAGGGAGTCGGAGCCGGAGCGGGCATGGACCCCTGGGTGCGGAGTGCGCTGATGGGTGAGAACTCTGGTGCGCGAGCCCCGGAGACGCCACTCGCGGGGGCCGACGGACGGGGGGAGGGACCACGCAATGGCGAGAACGGGGATCGAGCGCCGAATCGCAACGGCCTGACGGATCCTGCAACGTCGCCGGACCGTTCCCACGTCGGCAGGGAGAGCTTGCCGACGCGGGAACGCTCCTTCCAGGCATCGTGCGCTGGGTGACCTTCCTCTGCGCCCGGCCGGCGCATCGGCTTCTCAAGTCGTCCCGCTTGGCGAGTTCCGCACGATCGGCTTCGCGAAGCCTCTCGCTCTGCTAAGACTGATCTTTCACGGTCGTGATCGCTTCCTCTCCCGTCGTGGTGTTGCCGGGGAGGCACGGCCGGTTCTTAGGGGGAGGGAAGAGCGATGGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29513-30759 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTK01000041.1 Streptomyces griseostramineus strain JCM 4385 sequence041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29513 29 100.0 32 ............................. AACAGAGTCGACCGGAGAGGGAAGTGGGTGCC 29574 29 100.0 32 ............................. GTGACCATGGCGGCCACGAGGGCGCGTTCGAC 29635 29 100.0 32 ............................. GCGTCGGACGCCTGGCTGGCGGCCTGGTTGGC 29696 29 100.0 32 ............................. AAGGACACGTTCAACGACAAGCACTGGAAGCC 29757 29 100.0 32 ............................. GCGCGCGGGGTGCCGTCAGGGTCGGTCCAGGT 29818 29 100.0 32 ............................. GACCGCGGGTGCAAGGTCGACGTCCCCCGGCC 29879 29 100.0 32 ............................. GTCGCGCGACTTTCCAAAAGTGCAGGTCACGC 29940 29 100.0 32 ............................. CCTGCGTCGTCCCCGCGAACTCCGAAGCACAG 30001 29 100.0 32 ............................. CATGCCGGGGGCGCCGGGACAACCCCTCAGAG 30062 29 100.0 32 ............................. CAGAAGTCGGTGATCTCGATGTCCCGCAGTTC 30123 29 100.0 32 ............................. CCGCGCGGTCATCGTCGGCCCAACCCTCCGAC 30184 29 100.0 32 ............................. GACCTCAACGACGCCCGCAGCAAGCAGGCCGA 30245 29 100.0 32 ............................. GGCCGCAGCGCCACGGACTTGCCAGCGCCGGA 30306 29 100.0 32 ............................. GACAATCCGCAGGCCAGCCTCGCGACCGTGAC 30367 29 100.0 30 ............................. GACCGCGCCGGTCTGGTTGGCGTAGCGCTC 30426 29 100.0 32 ............................. CCTTCGATGACCGCGGGCAGCGCGTCGATGTA 30487 29 100.0 32 ............................. GGTGGCCCGCTTTGACGGAGCCACGCCCGCCT 30548 29 100.0 32 ............................. CCGTTCTCCACGGCGGCGAGGTCGTCGATAAG 30609 29 100.0 32 ............................. CTGTACCGGGGCGCGGCCGGGGTGCTGCAGAC 30670 29 100.0 32 ............................. CCGTCCGGCGGAAAGGCCATCTGGGGCTCTAT 30731 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GTGGGCAACGAGGGGGGAAAGCCGTTGTTCGAGTGCGAGGGCAGCGGGTGCAACAACTGGGCACGGTCGAAGCCGTATGCGGAAGGGTTCTTCTGTCGCCGGTGCCATCGGGCGATGAGCGAGCCCCGAGCGCCGAAGCGGTATGTACCGCCGCCGCTTCAGGGTGCTGCGGCACGCAGGGCTCTGGAGGCGAAGACGCCGGCGCCCTGGTTGCGTCCAGCTGCTGGGAAGAAGACGAAGACGTCGACGCTCGCGCACACGCCGCCGGGTCCGTTGCGGAAGTCGAAGCCGGGGTGGTGGGAGACCGACGACCGCTGGTGACGCGCAGCGTCCCGTACCGCGGTTCTTCGGTTGCGTAGCAGTCCCGTTGGTCCGCCGGTGACTGTAGCGTGGTTCGGCGCACCCAGAACCGGAGCCAGGATCTTATGCGTCATTTGTCGGAATCTGCAAAAGTTGCCGAAACCGTGCTCGGCTCGAGATAAACCCGCAGGTCAGCAAGA # Right flank : CACGTGGTAGCCGGCCTGCTTGCCCTTGCCGGTCTGCTCCCTGGCTTTGTCCACGAGAACGGACAGCAAATGTTCACCACTTCGGGAGGCACCCGGCACGTCGTGATTCGAACAGTGACGCTACACACCGTTGCGGTGCACGATCCCGACCATCCCGCTGTCCCCGAACTGCCGGCCCACGCCCACCAAAAATGCGACTTCGGGGACCGATCGAACAGTCATCAGCGGTAACGGCGATTCCGTTTACCGGGCGAGCCGACCTGGCAGCCGTCCTGATGTCGGCAAGGACAGCGGCAGGTGGTTATGTGCCGGTTTCCGGATTACTCCAGGTCGTCCCATGCCCATGGAGGGGCGGTACTCCCGTCGGGCTCACGCCCGAACCGGAAGCGTATTGGATCGCCTCCAGACGTGATCCATTGATCGAAGAACCCCGCGGCAGGAAGTTGGTCCAGCAGGGCGGCAGCCTGCTCGTCCGCTCCCACCTCCCGCAGCCGATCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3746-3894 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTK01000072.1 Streptomyces griseostramineus strain JCM 4385 sequence072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3746 28 96.4 32 ...........A................ CGGCCGGCCACCCCCGGTGCTGCCTCCGAGCC 3806 28 100.0 33 ............................ TCCTGGGCCCGCTTGCGAACCACCCCGGAGCGC 3867 28 89.3 0 .............C...T.......T.. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 95.2 33 GTCGTCCCCGCGCTTGCGGGGGTAGCTC # Left flank : AGCCCCGGAGGGTTACTTCGACACCATGCTCAGCCCGTACCCCGATACCGAACCGGCTCCAGCCTGAGCGGGATGCCCGCGGCAGATGCCCTGCAGCAAACCGTGCACGGAGCAGGACTCAACTCCCACGACCTTGGGACCGCCCCGCGTGACACACCTTCGATCTTGGTGACAACAAGCCTGCTTGGTGACAACCATCGTGCTTCGGCTCACACATGGTCCAGGGCTCGCGTGATGCGCGGTGGCGTCCACAGGTCGAACTCCAGGTGCTCGATGTCGGTGAAGCGGACCTCATCCAGGCTCCCGGCGCGGCGGCCGTTGTCCTGGAAGTACACCTCCTTGAGCGCTTCAGCCGCGATCTTCTTGAGCCGCTGGTCGCCGACGTCGGCCTGCTGGGCGTCGAAGAGGCCGGCGGCGTACTGCGGGGGCAAAGCGACGGTCGGATGCCGGATGCGGTCCTGGTCCGTCGACCCGATCGGAGCAGCAGAAGCCCTTCTGGT # Right flank : CATGACACGGCATCACAGTGGGGTTGCGATACGGGTCGTCCCCGCGCCCGCGGTAGTTCGAACTCTCCCGATCCTGCTAACTGCCGGTGTCGATGGCGGCGGAGGCGGTGTTCTGCTCGGGTAGGTGCAGGTCACGGCGGTGGCGTGCGGCGCGGCGGTGGGTGGCGGCGATGCAACGGGGTGTGCAGGCGGAGTGCCCGGTGTGCGGGCGGTCGTGGACGGTGGGGGTGGAGCGGTCGCGGTCGGCGGTATACCGCTCGACGCGGTGCCGGGTGCGGGCCTGCCGTCGGCGGCGGGCGTCGCGGGAGGGCGTTACGGAAACGCCGTAGCCGAACGCCTCACCTGTCTCTGTGGTTGACAATCTGATGAGACCGGGGACCGGTCCCGGCCGCGAACCGCTAAGTTGCCCCGTGAACGAGGCTCACGGCGCTGCGTAACAGTCAAGCCCTGATCAGATGAAGAGCGGAGTGTTCATCACGATGAAGTTCTTCCGGCGGCGG # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCTTGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8593-4898 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTK01000051.1 Streptomyces griseostramineus strain JCM 4385 sequence051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 8592 33 90.9 28 .............................CC.G GCAACCACGAGCTCGCCCCCGAGGAGTT 8531 33 93.9 28 .............................CT.. CCGTCAGCCGCAACCTGCGCCGCAACCT 8470 33 93.9 28 .............................TC.. GAAACCCGTCTCTCCTGCCCTGTCGTTG 8409 33 90.9 28 .............................TCG. TCGGGGTCTTCGGGGCGGGCATCTGGCC 8348 33 100.0 28 ................................. CCAAGGGCAAGAACGTCGTCATCACCGC 8287 33 100.0 28 ................................. CCAAGGGCAAGAACGTCGTCATCACCGC 8226 33 93.9 28 .............................CC.. CGAGACAGGCGACAGTGGCGGCAGCAGT 8165 33 97.0 28 .............................A... GGACGTGCAGGTGGACGTGCCAGCCGTT 8104 33 97.0 28 ..............................C.. GGGACTTGGCCTCCAGCTCCACCGCGTC 8043 33 97.0 28 ..............................C.. GGGACTTGGCCTCCAGCTCCACCGCGTC 7982 33 93.9 26 ..............................T.G TGCGCCGTCTGCACCGTGAGGGCTAC CC [7952] 7921 32 93.9 29 ............................-...G TTCACCACCCCGGAGCCGGGCGTGGTGAG 7860 33 97.0 27 ..............................T.. GGCTCGGGTGTCAGGGAGTGTCAGGGC T [7831] 7799 33 93.9 28 .............................AT.. CCGCCCTCGAGAACGGCGAACCCCCCGC 7738 33 90.9 28 .............................TC.G CGGCTTCTACGGCCCCGGCCCCGCCCCC 7677 33 90.9 28 .............................TC.T CGAGGGCCTTGCGGGCGCCGGCGCGCTC 7616 33 84.8 28 .....................A.......CGGG TCGAGGAGCTGACGGGGATCACCCCGAA 7555 33 90.9 28 .............................CC.C GCCCGCACCTCGGCGAGACCGCCACCTA G [7533] 7493 33 90.9 28 .............................AT.T TCGGCAGAGAGCCCGCTCTCATCATCGC 7432 33 93.9 28 .............................AC.. GGGAGCACGGAGCGGCGGTGCCGTTCTG 7371 33 90.9 28 ..............................CAG AGATCGCTGCGGAGCGGAAGGCCAGGGC 7310 33 87.9 28 .............................ACGG CCAGCGCACCCGAGGGCGAGCGGAACCG 7249 33 90.9 28 .............................AT.G GCGCGTCATCACCCTGCCCCGGCCCGGG 7188 33 100.0 28 ................................. TGGGCCACACCCGCCCGGCCGAGCGCGA 7127 33 100.0 28 ................................. TGGGCCACACCCGCCCGGCCGAGCGCGA 7066 33 87.9 28 .............................CCTC GGTGCCCGGACGTCAGGGGGAGGGAGGC 7005 33 90.9 28 .............................C.GG GTGATCCGAAGGCGTACCCGTGGGAGAG 6944 33 90.9 28 .............................C.GG GTGATCCGAAGGCGTACCCGTGGGAGAG 6883 33 97.0 28 ..............................C.. CTTGGTGAAGGGCCGCCAGGACTCCGAG 6822 33 90.9 28 .............................ATG. AACGGCGCATCGCCGAAGCGCTCAAGTG 6761 33 87.9 28 .............................CGTC CGGCATCCCGCCGGCGACAGTCTCACGA 6700 33 87.9 28 .............................CGGT TCGAGCGTGCGTGGGGGTTCGCGTTCGT 6639 33 97.0 23 ................................G CGGACCGCGGCCTCAACGGAGTC CGCTG [6607] 6578 33 93.9 29 .............................T..T GGCCGGTGATGATGTTGGGGCCCGGCCTG 6516 33 90.9 28 .............................CC.T CATGCCCAAGCACATGGACGTCGGCCGC 6455 33 90.9 28 .............................CC.T CGGCTACACCCGGCTCATCACGTACACC 6394 33 90.9 28 .............................CCG. CCATGGACGCCAAGGGCGGCATTGACCC 6333 33 90.9 28 .............................CC.T CGTACCAGAACCACCAGTTCAAAGTCAG 6272 33 90.9 28 .............................CC.G CGCCGACCAGGCGCAGATCGACCTCGGC 6211 33 90.9 28 .............................C.GC CAACTGAGTAATGGTCTCACCCTCGGCC 6150 33 90.9 28 .............................CCG. GATCGCGACGCGCGACCTGATCGCCACC 6089 33 90.9 28 .............................C.TG CCCACCTCCCCCGGAAACGCCTCAGGGC 6028 32 97.0 29 ............................-.... TCGCCCGCATCACCGGCATCCCCGTCCAA 5967 33 90.9 27 .............................CG.G GAGCCGGGCGGGGTTGCGGCGGACGAA T [5938] 5906 33 90.9 28 .............................CGG. TCATCACCAAGATCAACAATGCGCAGGG 5845 33 87.9 28 .............................ATGC CCGAGCCCGAGACGATCCCCCTGAGCCC 5784 33 90.9 28 .............................CT.G TTCGCCAGGTTGTTGTCGAGCTCATCGC 5723 33 87.9 28 .............................ACGG ACGAGCGGGTCACGGAGGCTGTCCTGGC 5662 33 90.9 28 .............................TC.G AGTCCGCGAGCGGGCTCGAGGGCATGGT 5601 33 90.9 28 ..............................CGT GCTGCGGATCGTCAGCATCGAGAACACC 5540 33 93.9 28 ..............................G.G GGTGTGCCGGTGGGTGTGACGGCCAGGG 5479 33 90.9 28 .............................CTG. TGGACAGGACCAGGACGAGAGCGCCGTA 5418 33 100.0 28 ................................. GCGCCCGGTGGACGATCGCTCCGGATGC 5357 33 87.9 28 .............................CCTC GCTCAAGTGGCGCCGGGAGATCGCCGCG 5296 33 87.9 28 .............................CGGG ATGCCGAGGACACCCGGCCGCCGACCCG 5235 33 97.0 28 .............................A... AGCCCAACACCTCGCAGACCTCGCTGCC 5174 33 90.9 27 .............................TG.G GCGGGACGGCGGCGTGCGACCGGAGGA C [5145] 5113 33 90.9 28 .............................A.GC CCAGCTTCCCGCCTGTCGCGTCCAGGTC 5052 33 93.9 28 ...............................GC CCGACACGGACAAGTGGCTGGCGGCCGG 4991 33 90.9 28 .............................AT.G AACAGGGCGGCCAGGCCCGGGTGGACAC 4930 33 81.8 0 ........................CA...CGTC | ========== ====== ====== ====== ================================= ============================= ================== 61 33 92.3 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGACA # Left flank : CGTCCAGGACGTCCAGTCCCTGCTCACCCCGCCCCACACGACCACCCCCGACGACGACACCGACGAGGAACACTCCGAACGGCGCGACGTACAGATGGTCCACCTCTGGGACCCCAAAGCCGGAGTCCTCCCCGCAGGCGTCAACTACGCCGAAGGAGGCAACTGATGCCCTCCATGGTCGTCATCGCCACCACCGCGGTCCCCGACCACCTGCGCGGCGCCCTCAGCCGATGGACCAGCGAAGTAGTGCCCGGCATCTTCATCGGCAGCGTCTCAGCCCGCGTCCGCGACGAACTCTGGCACGCCGTCACCGAAGTCGTGGGCAACGGCGCCGCCCTCCTCGTCCACCCCGCCCCCACCGAACAGGGCTACGCCGTCCGCACCGCAGGAACTCGACGCCGGGTCCCTGTCGACTTCGACGGCCTTACCCTGATCCGCATGACCGCCGCGCCAAAAGCAAAAGAAACGCAAAGCCCCTCTTAAAATGCAGGTCAGGAAGT # Right flank : CGAGGTCGTGGCTGGCGTCGGTACGGAAAAGCGTAGGGGCTCCGGGGGGCTCTGGTTGCTCAGAGACCTTGAGCGCTGGATGAGGGCATGGCAGCGCTCACCCGCGGGGACCTGGCGCCGCGTCGTCGGTGGAGTGTGGTCAGCCGTGGTAGGTGATGTAGCCGTTGCCGTCGCGGTCGTTGGCCTTCTTGGTGTAGGCGTGGACGTCGGCGCGGGCGCCGGAGGGCTTGTAGAAGTAGATGGTGTCCTTGTCGTTGTTCCAGATGAAGTTGCAGTTCTGGCGGTAGACGACGTTGCCGGCGTCGGAGTCGGTGCCGCGGCCGCCGCGCAGGTGGACGTAGTCGCCGGGCTGCAGGGTGTGGCTGTTTTTGAAGGTGAACGTGTTGCCGGCGGCGTCCTTGACCTTGTAGCCCTTGAGGTTCACGTTCGTGCTGCGCGAGTAGTTCTTGAGGCACTGTCACGTTGATTGACCAGGTGGGATGATCTTCTGGTTGGTCATG # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.10, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17983-20388 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTK01000051.1 Streptomyces griseostramineus strain JCM 4385 sequence051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17983 28 100.0 33 ............................ GGTGGCCACGCCTCCGTGTTCATCGCCCCCGTC 18044 28 100.0 33 ............................ GTTGGCCACGCCTCCGTGTTCATCGCCCCCGTC 18105 28 100.0 33 ............................ GATGTACATCCGCCTCCGCACCGCTGACGAGTC 18166 28 100.0 33 ............................ GGAGCTCGCCCGGCTGCGGGCCGACGTCGGGAT 18227 28 100.0 33 ............................ GCTCAGCGGCTGGTTCTTGACGCGCCAGTAGCC 18288 28 100.0 33 ............................ GCCAGCACAGGGGAACGAATGTTGCCCAACCGA 18349 28 100.0 33 ............................ GCCGTCCGGGCCGGGCACGGTCCGCCCTTCCAG 18410 28 100.0 33 ............................ GACCCCACCGGGCCCGGCTGGCACCGCCTATGC 18471 28 100.0 33 ............................ GCTGGTCACCTTGGCCAGCCAGTGCTTCCTGCC 18532 28 100.0 33 ............................ GCCCTCAAGAGCCGACGCCCGGAACTGTTCGGC 18593 28 100.0 33 ............................ GACACCGGCTGGGGTACACCCCCCACCGACCCC 18654 28 100.0 33 ............................ GAGCATGCTCGGCAGCGTCAAGAGCGCGGCCAG 18715 28 100.0 33 ............................ GACGGCGGCCTGATCATGGGTGAGGGCGTGCTG 18776 28 100.0 33 ............................ GGCCGCGTCATCGGCGGTGGAGTCTGTCAGCGA 18837 28 100.0 33 ............................ GTTCACCACCCGCTACCGGGCGACCGGGACGGT 18898 28 100.0 33 ............................ CTGTTCAGGTTCGCGGGCACCACGAGGCCCGGT 18959 28 100.0 33 ............................ GCACGAGAGCGACTTCCTGATCCTGCCGAATGC 19020 28 100.0 33 ............................ GTCCGGGACGACGCTGCTCGACGAACGGCCCGG 19081 28 100.0 33 ............................ GACCCCCTCGGCTACGGGGTGGTGACCCGATGA 19142 28 100.0 33 ............................ GTCCGCAGGACCAGCGGCGCGACGACGGGCGGC 19203 28 100.0 33 ............................ GGCGCGGAAGAGCGCGTTCTCCAGCGCGTAGCG 19264 28 100.0 33 ............................ GGCGCGGAAGAGCGCGTTCTCCAGCGCGTAGCG 19325 28 100.0 33 ............................ GTAGACGACGGTGAGCGGGCCGACGTCGGCGCG 19386 28 96.4 33 ....................A....... GCCGTCCTCCTCGACGACGCCGTACAGCTTGTC 19447 28 100.0 33 ............................ GCTGTATCTGCGGATCGATGACAACCTGCGGGC 19508 28 100.0 33 ............................ GCTGTATCTGCGGATCGATGACAACCTGCGGGC 19569 28 100.0 33 ............................ GGAGACCCCGGCCGACGGCGGGGTCGTGCAGAA 19630 28 100.0 33 ............................ GCTGTATCTGCGGATCGATGACAACCTGCGGGC 19691 28 100.0 33 ............................ GCTGTATCTGCGGATCGATGACAACCTGCGGGC 19752 28 100.0 33 ............................ GATCGAGTTCGGGGACTCCGTCAGCGAGGACCC 19813 28 100.0 33 ............................ GGCGCGGAAGAGCGCGTTCTCCAGCGCGTAGCG 19874 28 100.0 33 ............................ GGCGCGGAAGAGCGCGTTCTCCAGCGCGTAGCG 19935 28 100.0 33 ............................ GACGGTGCGCAGCGCACTGGGTGAGCTGTACGC 19996 28 100.0 33 ............................ GAATTCGGCGGCCTGGATCGTCTTCCCGCCGCG 20057 28 100.0 33 ............................ GGCGGCCGACCTCGCCGAGACGGTGAAGGCTGA 20118 27 96.4 33 .....-...................... GCGGTGCGGGGGCGGTCAGAAGTCCATGCCGGG 20178 28 100.0 33 ............................ GGCGTGTACGGGGCGCTGCAGTTGCACGCCGCG 20239 28 100.0 33 ............................ GATCGCTCACATGGGCCTGGGTACGGCCAGAGT 20300 28 100.0 33 ............................ GGACTGGCCGAACTCGCGTACCAGCCACCATTA 20361 28 92.9 0 .....................A..C... | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.6 33 GTCTTCCCCGCCGACGCGGGGGTGTTCC # Left flank : GCCCAGCTCCGCACTGAGGTACTGACTGCCGTGCCAGGAGCAGAACTGGAACCCTGACAGCTTGCCGATGTCATGCAGACCGGCACACAGACCGACGACCGCCCTCGCACGTTCCGGCTCGCCCGCCAGCCGCATCCCCTCGGCGATCCGCACACGCTGGTTCTCGGACAGGTAGACATCCCAGAGGTGCAGCGCCATCGCGGCAGCGTCCAAAAGGTGCCGGATCAGCGGATACGGCGGCAGCCCCGAATCCAAACCTCTCGACTTCCCCCACACCGACTCATCCGGAGCTTCCCACTTCCCCGCCACCCTCGCCCCCTCACTCCAGCCAACGGATCGTGCCCCGCTGCTGAAGCCGGAATTCAATCACCTTCCACTGACAACACCGCAGCCATCCAGCCCCGATAGGGTTACAACATGCAGTCCCACCGGTCGCGACACAGAGCGCCCTTCAATGCAAAGGAAAGGCAAAGCCCTTCTTAAGCCGCAGGTCAGAAAGA # Right flank : CGAGACTGCCGTCCTGGTCGGAGATTAAACTGCATCGCTACCGCACGGTGGGCGATGACGCGCACTGACATCGGATGCGTGCACCGAATGCCGGAATGTCCTGCACTTATCTCCGACGGCGGCGCAGGCGCGCGAGCCGCCACGGGTTCGGCCAGCTACCAGGAAACTGCCTTGAACAGCGCCGCACGCAGCCGGAACGCGTCCGCGAGCTGCTGGAGGTATTGCAGGCGCTCCAGCGGCAGGGACGGTGGGATCGGGACAACCATCGGATCCCTCCCGCTCCCGGCCCGCTCCGGGATCGGGCGGCCGATCACGTCCCGGCGCATGGCATGGGAAATTCGTCGTCCGTCCCACTGGACAGTTCCCCGCCGTCACAGCTGGATGCCCTGGCCGGGCCGGGCTGCGGGTGCTGCTCGTGTTCCTGGGGGTGCGGGTCGGCGTCCAGAGCTGAGGGCTCCCGATCCTCGATGGCGCGGATGATGGTAGCGAGCCGCGCCAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCGACGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCCGACGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1707-2406 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTK01000080.1 Streptomyces griseostramineus strain JCM 4385 sequence080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1707 29 96.6 32 ............T................ CAGACCGGGGTGACCATTACCCCCCACGGCAC 1768 29 96.6 32 ............T................ CTACCTAGATCCAGGGCGAATCCGTGCCTGTT 1829 28 86.2 32 .............T-........A....G AGCCCATCGTTCCCCAGCGGCTGGAGCTGGGC T [1841] 1890 29 86.2 32 ....C.........T........A.T... TCCTGTGTCCTCTTCAGCGCCTGCTGGAGCCC 1951 29 93.1 31 ..............T..A........... GTGTTCCGGGTGTATACGCCGAGACAGTTGG 2012 29 100.0 32 ............................. ACGACCGCGAGCTGCGGATCGCCCGCGTGATG 2073 29 82.8 32 ........T.....T...A....A.T... TGTTCGGCGCCCCCCTCGCCGTTCCCTATGTG 2135 28 89.7 32 .............T.......-.A..... CACGATCGGAGCAACCCCGACCATGGCCACCG 2195 29 100.0 32 ............................. ATCGGGCTGTTCTCCCTGTCCGTGGCCCAGCG 2256 29 93.1 32 .............T..........A.... TCCTGGAGCACGCCCAGCTTGCATGGGAGCAG 2317 29 75.9 31 ...........A..T....A...AATC.. GCCATATACGTCGTCATCGGCCGATCGGGCT 2378 29 72.4 0 A...C......A.T.....A...A.TC.. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 89.4 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : CCGCCGACCCACCACCGGTGGGTGATGGCCCGCCGCAGCCTGTCCGACCCCGAAGAGCTGGCCTACTACCTGGCCTACGCACCCGTCGGCGTCGAGATCGCCGAGCTGGCCCGCATCGCCGGCTCCCGCTGGGCGATCGAGGAGTGCTTCCAGGCCGCGAAGAACGAATGCGGCCTGAACGAGTACGAGGTCCGCCGCTATCCCGGCTGGTATCGGCACATCACCCTGGCCATGCTCGCCCACGCGGTCCTCACCGCACTCGCCGCCCAGGCCGCCGAGGCCGCAAAGGGGGCTGCAGAAACGGACCAGCCCTCGTCCCGCTCACGGTGGCAGAGATCCGGCGGCTCCTGGACGCTCTCCTGCCCCGCTCACGAGCCGACCGCGCCCCCATCACCCACGCACTGAAGTGGTCGGCCTGGAGAAGACACCGCCAGGCCGTCGCCCGCCGCTGCCACTACCGAAAACGCAGCTCAGAACACGATTCGCTGCTGGAGTACTAA # Right flank : CTTCGACGATGACTACTGGCACCCCCTCCGTGAACCTCTTCCATCTTGATCAGGTGGCGAGTTCGAGGGCGACGACGGCTCGGACGACGGCTGTGATCCGGGTGGTGCTGCAGCGGAGTTTCCGCAGGAGCCGCCAGGACTTGAGGATCGCCATGGCGCGTTCACCGAGGCTGCGGATCTTCGCGTGGTCCCGATTGTGACGGCGGCGCCAGCCGCGCAGATGCTTGCCACGGATCGGGACGTGGATCGCAGGGCCGGCGCCCTGGTACGCCTTGTCGGCCCAGCACTTGATGTCATCTGCGGCGAGGGCGGCGGGAATGCCGTGGGCCCGCGCCGCGGTCAGGTCGTGGGTGGCTCCCGGCAGTGCGTCCGAGGCCCAGATCAGGCGCCCGGCGGGATCGGCGAGGACCTGCACGTTCATCCCGTGGTGCTTCTTCTTCCCGGAGTAGTACGGCTGGTCGGCGGCGATGCGGTCGATCGGCAGCACGGTGCCGTCGAGG # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3327-3765 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTK01000080.1 Streptomyces griseostramineus strain JCM 4385 sequence080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================== ================== 3327 29 69.0 75 G.....T.......GTA....ACT....G GCTATACCCCTGAGAGCGTCAATGCATGTAAAGGAAAACAAATGTGCTTGCTAGCATTACTGCAGGTCAACAAGT T [3338] 3432 29 96.6 32 ......T...................... ACCACCATGACGATCTCCGGGCTCCAGCCCAA 3493 29 93.1 32 ......T.....................T CCGCAGGCGCGCATGGGTTGCGTAGACTGCGC 3554 29 96.6 32 ............................G ATGGGCATGACGTGCTCACGGACCTCTCCGAG 3615 29 100.0 32 ............................. GAGCGCCTGGACGTGCTACCCAAGGGTCAGGC 3676 29 93.1 32 .........................C..T CCGTTGGGAGAGGTCCCCATCGTCCCTCTCAT 3737 29 86.2 0 G..........A..C..........C... | ========== ====== ====== ====== ============================= =========================================================================== ================== 7 29 90.7 39 ATCGTCCCCGCGCCTGCGGGGGTAGTTCC # Left flank : CCCGTGGTGCTTCTTCTTCCCGGAGTAGTACGGCTGGTCGGCGGCGATGCGGTCGATCGGCAGCACGGTGCCGTCGAGGATCACGTACGCCTTCTTCCGGGCGGTCGTCATGGCCTGTTCCAGCGTGGGCGCGAGGGCGGCCAGGAGGTCGACGGCCTCGCGCGTGTAGCGGTAGGCCGTGGCGATCCCGATGCGGAAGCCTGCTGCGAGGCGGGCGTAGGTGTCGCCGCAGCGCAGGTGTGCCAGGACGAGCAGGGCCTGCCGGCCGCAGGTGAGGCGACGCCAGCGGGAGCCGATACGACGGCGGTGATCTGCGAGGAGACCGGAGAGGTGTTGCAGGGTGCGGCTGGACAGATCGATGCCGGACGGGTAGACAAGCACGCGAAAGCTCCTGGCGAACTGGTGATCTTGGTCGAGAACCCGTCTACCAGGAGCTTTCTTCATGCCCGCCGCCGGAGTCACCCGCCCAACCACCCGTCAGGTTGGAAACGGCTCCGTGA # Right flank : CTTCTCGCTGAACACGGGCCCGTGCACTCTCTAACTTGATCTTTAACCTGTGCGGCGGGGACGTGGAGTGGTCGACTTCTTTGTTCTTCGTTGCGTCCGCTGTGTTGTGCGAGCTGTGTGCACGTCGTGGCGGGGTGTGGGCCGGGTGTTCTTGCGGCCTGGTGGTCGTCCGGGGCCGGGCCGGGAGGGTTTCGGTGCCTGGGCCGGGCAGGTGGTCGACGGGCGGATGTGCCGGAAGTCGCGGCGGACGCGGGCTGGGGTGAGTCTGTCCGGTGGGCTGGGTTTCTCCCACGGCCGACGCCGGTCGGCTGCCAGCGGCCGGGCAAGCCGCAGCTGGGTGTAGGCGGCGATGATCAGCCAGGTCCATCGGTCAGCTGCCTCGGGGGTGCGGATCTTCGGTGCGGTCCAGCCCAGGGTCTGCTTGAACAGGTGGAAGGTGTGCTCGATGTCGAAGCGTCGCAGGTAGGACTGCCAGAGGCGGTCGGTGTCTGCGTTGGTGG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:-0.53, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGTCCCCGCGCCTGCGGGGGTAGTTCC # Alternate repeat : ATCGTCTCCGCGCCTGCGGGGGTAGTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //