Array 1 52-1161 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXX01000003.1 Pseudoalteromonas luteoviolacea S4060-1 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52 28 100.0 32 ............................ ATTCCTGAAACGCATGGATATTTGAAGTATGA 112 28 100.0 32 ............................ TGACAATATTTTGTCCCTCAGTGCACGCGCCT 172 28 100.0 32 ............................ TGATGCGATGCGTATAAACCAAAATATTTTGA 232 28 100.0 32 ............................ AACTGCACTACCCCAACCGTTCATCCAGACTG 292 28 100.0 32 ............................ GAACATCGCAAGACTGGTCGAAGCGCCCACAA 352 28 100.0 33 ............................ ACTAAGTCCTGTCCCTGTAGTGACGTTGATTTT 413 28 100.0 32 ............................ TTGCATAATGTTATCTAGCGCATCCTGATAGT 473 28 100.0 32 ............................ GATGGGCCCTAACCACCATTGACGATTACCCC 533 28 100.0 33 ............................ CGAGTGATGCAGTGTGTTTAGTGTCCACAATCG 594 28 100.0 32 ............................ AACACCCGCAGCAGCTAAGCTGATAATGCCAG 654 28 96.4 32 ............G............... AACTGACGACTTCAAAGCATCAGAGTCAATAT 714 28 100.0 32 ............................ AAACGATTCAAGGGATAAGGTATAAGAGCCAA 774 28 100.0 32 ............................ ATTGCACACGTCAATGCTCAGTGTTTCATGCA 834 28 100.0 32 ............................ AGGATAAACTTTTACACGCCGCTTTCTTGTGT 894 28 100.0 32 ............................ ATTCGAATTTTTATACTCGACATTGGGCCAAC 954 28 100.0 32 ............................ TGAAACATCAAGTGGTTCTATCGCATCAACAA 1014 28 96.4 32 ...........T................ ATTTAAAACAGCGCCCAAAGTTTCACCGTATA 1074 28 96.4 32 ...........T................ TGATAATGAGTTTGGAACAGCGCGTTTAGAGA 1134 28 92.9 0 ..C........T................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.1 32 CTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : CACACAGGCAGCTTAGAAATTATCCAGTAAGAGGACAGAAGATAGGTTTAGC # Right flank : AGCAGTTTGCTGTGCGCATTTGATGAAACCATATTGCTACGATTTAAAATACAGCTTAATGAGACGAGTTTATGGCACTCGTTAAAAAGGGTTGAGTAAGTTTTATACAAAGAATGGGTCTTACAAGCTGATATCTTTTCTAAGGGCTGAGATGTGGAGTTTAGGCACTTATGGAACTGTTTCACAATTCAATTTTGTTATCTACGCAATGAATGAGCCCAGGTCAAGGAGTGATTTTTTATTAGATTTATAGTTGATTTGTTATTCTTTGTTGGTATTTTGTAATTAATTTATAAGGAAAATAATTGGCCAACCTAGCATGATAAACAATAAAAAGTTACTCCTTCCAGTACTTGGCACGCTTTTTCTCGGTGCTTGTAGTTTAAATCAAAATCCCGAAGGCTCCTATAGTGGAGATGACAGAGTCAATATGGCGGGAGCAGCACAACTATTATCACAACATAGCTTTGTGACGATTGATTTAGCGCCCATTATTGCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1529-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXX01000004.1 Pseudoalteromonas luteoviolacea S4060-1 contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1528 28 100.0 32 ............................ ATAAATGAAAACAGCGCCATGACGGCGCTGTA 1468 28 100.0 32 ............................ CAAGTGTGCAGGAGGTGAAGACCGGGAAAATT 1408 28 100.0 32 ............................ AAAAGGTGAAGTAGGGCAATCAGAAATTAAGT 1348 28 100.0 32 ............................ GATAGCTGCTGAGCCTTTAACTCTGCGATTTG 1288 28 100.0 32 ............................ GGACCCGTAGCGGTTGCCAATGGCGGAACAGT 1228 28 100.0 32 ............................ CATTTGTCAGCAAGGGATCTTTTGCTGAATGT 1168 28 100.0 32 ............................ ACTGACCGGAATAGCATTAATCGCGCTGATTA 1108 28 100.0 32 ............................ AGGCATTAGTGCCTCAGTGCCCGTCCATGATT 1048 28 100.0 32 ............................ GTCCAAGCCACTGGCTTACCTGTTTTATATGA 988 28 100.0 32 ............................ TAGTAAATCATCAACCCTTTGAACGTCATGCT 928 28 100.0 32 ............................ TTTATACACCCCTGTATTTTGCTGTTTCATAG 868 28 100.0 32 ............................ AGACATAGCGCCCGTATCCTCCAGGATGAAAT 808 28 100.0 32 ............................ ATATTTACCCCTGAGCAGTGCCTGCGGAGCAC 748 28 100.0 32 ............................ TGTTGGTAAGTCAGAATCATCTTCATCACCCT 688 28 100.0 32 ............................ TCAGCTTCGATGGTCATCGATTCTCTCGATAT 628 28 100.0 32 ............................ ACAAAAGCACCTCAAACTTGAGCCCGTTTGAT 568 28 100.0 32 ............................ TGACTGTAAGCGATTTAGCTTAAGGTTTTTAA 508 28 100.0 32 ............................ AAACTCGCACAAACCATCTTCTAAGGAAGTTA 448 28 100.0 32 ............................ AAACGGAATGCAGAGTTATCACGATCCTTTAT 388 28 100.0 32 ............................ ATATGCTGAGATAGTCATCTAAACAGGGTGAC 328 28 100.0 32 ............................ TGATTGTTTTGGTTCTGCCAGTTTGACCCAAT 268 28 100.0 32 ............................ AACGGACAAACACGAGTCCTCCGGTCTATTTC 208 28 100.0 32 ............................ TGTATGCCCTGCTCAAGTTTTTTGTTATAGAC 148 28 100.0 32 ............................ GACTCGAAACTCTTCACCGGGGAATGCTACGA 88 28 100.0 32 ............................ CGCTTCCCGTGAAGCGCGCCAAGGCCAGTACT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 100.0 32 CTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : CCAGGTGAGGTCAGCTATGTGAGCTTTACGCGAAAAAACGTAAAAAGCCCTGAGCGCATTGACCGTGAAATGGTAGAAAAAGCGCAGCGATGGTCTCAAAAAAGTGGTAAGTCTTTAGAGGAATGTTTAGCTGAACTTGAACAAACTAAACCTGATCTAAATACCAAACACCCCTTTATCTTTTTGCATAGCCAACAGACCAAAGTGCGCTCTCCGGATAAAAGCAATAAGTACCCGTTATTTATTGCTATGCAAGAACTTGAAAGTGATACACATGGCATATTTGATTGCTATGGATTGAGTGCAAAGGCAAATGATGAAAATGTATTTGGGTGTGTCCCTCAGTTCTAACAAATAAAGGGTATTTTTACCCTATATTTTTGCTCTTTTAAAATTTGCATAAAATACAATGAGTTGTGATATGCTGTTTTTAGCAAGGTAAAACTAGGTTTTTTGCCTTAGTAGCCTGTTGCAACTTATCTTTTTTCATTTATTCTATG # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11832-11324 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXX01000004.1 Pseudoalteromonas luteoviolacea S4060-1 contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11831 28 100.0 32 ............................ ATTAACGAAAAGTTACAGGAGTCGTATCTACA 11771 28 100.0 32 ............................ ACCAAGAATCAAAGCGATCTGTAACACTAAAA 11711 28 100.0 32 ............................ TCATGACCGGTTTTCAACTTTGAGTTCTCAAA 11651 28 100.0 32 ............................ TACAAAACATATAGATGATGCGACTTGGAGAA 11591 28 100.0 32 ............................ GTTTCTAAATCTGGATAATATCCGTCACCTGG 11531 28 100.0 32 ............................ TCTACAAGCGAATTGTAAAACAATTGAACCAT 11471 28 100.0 32 ............................ TCTTACGTTGGGTCGTAGCGAAAAAAAGGTGG 11411 28 100.0 32 ............................ TGACCAAAGAGGAAGCCGTTGAACTTAAGAAC 11351 28 82.1 0 .......A.........T..TC.....T | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : AAACGCTTTAAACACTATGCCAAAGAAGTCGAGCTCACGAGTTACATCAACCAATTTTTAGACAATAACGCATTTCGCAATATCGCCCTTGGCCAAAACTACTTTGACCTGATGAATTTGGACTTCGAAGCCCCCGTGATTTGCGAGGAGTGATGGTGTATACGTTTAATGAAAAGCAAAATGCATAATTTAAAACGCGCGAGTCATTTAAGTCTGTATCTTTTTTCATCAAAAAGATAAGGTTGTAAGTGCGTGAAGAGTTTGTACTTATTTAGAGTAAAACTGATTTGTTCTTTAAAAATTTGGGAAATGAAGGGTGTAATTTAATACCCAAGAGTTTGGTGTGAGTGGCGATGATGATGCAGGTTTTACCTTATTTTAAAGGAGATAATTTTAGTTATTGATAATCAATAGCTTAGATTTTTGATACAAAATAAGGTGTTTTGAATAAATTTTAACTTCAGGTCTGTTTTTTAGATACTTTTTGGATAATTGTTATA # Right flank : GTTCACTCTTTAGTTGTTATTGATCAATGACAACCCCTACCGTCTTTGATACATTTATTTTACGTTTAATTTACTGAAAGTTGTGTATGCAGGCTAAGGAAGAGCAATATTTTAGATATATTGAGGCGGTGTTATTTTGGCAAGGAGAGATCCAAACAGGCACTTTTCAAGATAAGTTCAAACTATCAAGACCCAGCGCAAGGCGCTACCTAACAGACTTTATCACACGGTATCAAATTGATGCACATTACAACGAGTCTGAAAAAGCCTATGTATTGGCAACCCCCTTTACACCGAATTATATTTCCCAAGACTTTACCGAGTATGCCAATTTAATTGGTGAGCAGTATGTACACAACCTAAGTAACTCGACGATTTCAACGCTCCCATTACCTCATAGAAAACTCAACCCTACTATTTTACGGCCCATATTAAACGCTTGCCGTCGACAAAGTGTGCTCGATATTCGTTATCAGTCGATAAAAGAAGGTGGAGAAACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //