Array 1 130100-131042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFF01000011.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2932 contig11.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 130100 29 100.0 32 ............................. CTGAACCTCATAGGTGGCTGGGGTAAGGGAAG 130161 29 100.0 32 ............................. GCTTTCGGGGCGATCCTGGCTTACCGGGCCGT 130222 29 96.6 32 .........A................... AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 130283 29 100.0 32 ............................. TCCAGCCCGGAGAACGTCTCGGGCATCCCCTT 130344 29 100.0 32 ............................. ACGGCCCGCCTGCTGCGCTACCCGGAAGGACT 130405 29 93.1 32 ...G.....................C... ATGTTCGGTTCCGGATGGGACACCCTCAAGGG 130466 29 96.6 32 ...G......................... TCCCGGCGCAGGGCTTCGACGACCAGGGCAGT 130527 29 96.6 32 ...G......................... TCCCACGACTTCCGGGAGACCTGGACGGCCCG 130588 29 93.1 32 ...G...T..................... TCGGCCAAGCAGGCGAAGCTGTGGCATCAGGG 130649 29 100.0 32 ............................. AGCACGCTGACCACTTCGCCGTACACGTCGAT 130710 29 96.6 32 ...........C................. TGGTCGATGAGCAGCCCGACCGCGACGAGGTG 130771 29 100.0 32 ............................. GGATCACGGCTCACGTAGGGTCGGGGGCAGTC 130832 29 100.0 32 ............................. ATCGCCGAAGAGACCCAGTCAGGCATCTTCCA 130893 29 96.6 32 ..............G.............. AACCGCTGGCAGCCTCTCAACGGCGGCCACAG C [130909] 130955 29 100.0 32 ............................. GCCGCCGCCCTGCGGATGCTGCTCCAGGACGG 131016 27 82.8 0 ........--.....A.....T...C... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.0 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ATGGCTCCTGTGACGGACACGGGGCGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGGGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACTCCGCCAGCCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGGCCGGGGGGGCTGCCGCCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGATGAACTGGCAGGCTGGGAGACGGATCCCCGGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCAAAAACGCCCCCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : CTCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCCATCGCGATACGCACGCGCACGCCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCAGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCACCGAACCGCACAAGCGCAACAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGGCGGGACGT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 135404-136286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFF01000011.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2932 contig11.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 135404 30 96.7 31 .............................A GCGATGCGAACACGGGAGGATCTCCTGGACG 135465 30 96.7 31 .............................G GGACCCGCTCCCTAGCAAGTGACTCGCAGCG 135526 30 96.7 31 .............................G AGCTGTGTCGGGTGCCGTGTCGGCCGTGTCG 135587 30 100.0 31 .............................. CGCGCAACGGGCGCGCCTACCGCCGCCTGTG 135648 30 100.0 31 .............................. GCGACCGCTGACCCCACGCCCCACCACCCGG 135709 30 96.7 31 .............................G AGCATCGACGCGATGCTGAACAGCTTGTCCA 135770 30 100.0 31 .............................. GGCCCTTGCCGTCCGGGACCACCGGCACTCG 135831 30 96.7 31 ............................T. CGGCTGGACGCGGTCTATGCGCCGTACCCGG 135892 30 93.3 31 ............................TT CCTCGCCCTCCTCGATCGGGTTCAGGCCCAT 135953 30 100.0 31 .............................. GTGGCCATCTCACCGCCGGAGAGCCGGTCCG 136014 30 96.7 31 .............................A TCAGGCTGCCGATTCGGGGGGTTCCTCACTG 136075 30 96.7 31 .............................T TGTTGCGCATCGCCGACGCGATCGGTGTCCC 136136 30 96.7 31 .............................T GGCCGTTCAGGTCCTGGTCCAGCTCGATGTC 136197 30 96.7 31 .............................T CCTCTAGGCGGCGGCCGGGGTAGTACCGCTG 136258 29 93.3 0 .........................-...A | ========== ====== ====== ====== ============================== =============================== ================== 15 30 97.1 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACGCCACGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCGGAAGCCCTGCCCGACGGTCTCTGCCGCCCCTGCCACCACGCACACACCACCGGCAGCAACGACACCACACCCACCCCAGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGATGGTTCGTTGCTGGGCAGGACGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCTCCTTCCACCGAAGCCGGGACAATGAGACCTGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGATGAGATATGCCGGTTTCCCAACAACATGGCAAAACCCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGGG # Right flank : ACGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGCACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGCAGCCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGACAGATCGGGGCTCATCCAGCGCCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGACCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCAGGTGATCGGATGACCTC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 139571-140272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFF01000011.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2932 contig11.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 139571 30 96.7 32 .......T...................... ACCCCGACGACACCCTCACCAACCAGAGAGAC 139633 30 96.7 31 .............................T TCGCGGCCTCTTCGATCCACACGATCATGTA 139694 30 100.0 31 .............................. CGTCTGCCTGGGAAAACGGCCCTCCAGCCCC 139755 30 96.7 31 ............................G. TGGGGTGAGGCTGTGCCGATCCTGGTGGAAG 139816 30 96.7 31 ..A........................... GCAGCATCACGGATGTGGCGACCCGCCCGTA 139877 30 93.3 31 ..A..........................T GTGCGATTGCGTCCGGTGCCTGGCGCTGCCG 139938 30 100.0 31 .............................. ACGGGTTGTCGGCGAGCTTGAAATGCCATGC 139999 30 96.7 31 ...........T.................. GGCGGCAGTTGGGCGCCTCGGTCGCCATGAC 140060 30 86.7 31 ............AT.....A.........T CGTGGGTCGGCCAGATGTCCATGGCAGGCGT 140121 30 90.0 31 C..A.........................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 140182 29 90.0 31 ............AT...........-.... GCGACAGTAGTCGGCGCATCTGTACGACGGT 140242 30 80.0 0 ...........C.GT...C..C.......A | G [140255] ========== ====== ====== ====== ============================== ================================ ================== 12 30 93.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : TGCGTCGGGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACAGCCTCGGGGCCTGACGACGGGCATCGCTCACTGCTTCCTGGCTAGTCCCTGGCAGGAACGACGAGTTCCTTGAGCCGCCGAACCTCCGACCAGGAGTCGCGGGCACGCGGGCCCTGGGGGCGCGGGCCGAGCCGGTCGGCTCAAGGCACCGGTAGTGGTCGTCGTAGTCGAAGACCTCACTGATGTCGGCCACCAATGTGTTCGCACAGCGAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAGGGCCGGTCCGCTTCACTTCCACCGAAGCCCGGCCGACGAGATCGACGGCGGGCAGAATGACATCAGCCAAGCCATGCACATAAACCCTTTGCGACAGAAGGTCGGATATGCCGGTTTCCCAAGAAGTGAGTAAAAACCGCCACCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGGATGTTCGCGGTGCCGCTTCGGCCGTCCCGTGTTCCGTAGCCGCCCCCGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGGTCGCTCAGCCCAGCCCCTCCTCCACCAGGGCCGCCCACTGCGCCACCACCCGCGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGCGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCTTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAAGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22150-22728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFF01000037.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2932 contig37.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 22150 30 96.7 31 .............................T GTGAGTTGAGATACTTCTTTCGGGGTGGCGT 22211 30 96.7 31 .............................C GCTCGAAGAACTCGTCCGAGCCCAGCAGGTC 22272 30 100.0 31 .............................. TCACGGTCAGCTACCCGCACGCGAAGCTGTC 22333 30 100.0 31 .............................. CCGCGAGGTCGGTGTACTGCGGGGTGGGGTT 22394 30 100.0 31 .............................. CCAGCTCGACCAGGATCAGCCGCTCGACCAG 22455 30 96.7 31 .............................C AGTCAAGCAGCGGTCCGCCTTGCCCAGGACG 22516 30 93.3 31 ..................A..........T GTGCGACATTAATAACGGGATCTTGCTCGGA 22577 30 96.7 31 .............................C AGGTCACGGGGGTTGTGCTCCTGTCGGGGAT 22638 30 96.7 31 .............................A GGTCCTGCCAGTCGGTGAGGGGCCGGACTTG 22699 30 76.7 0 .....................TCAACAG.. | ========== ====== ====== ====== ============================== =============================== ================== 10 30 95.4 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAACCGGGCGAGCACGTGGCCGACATCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGGCCTCTGAAAGTCAACCGACGACGGTCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGAAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCTCAAACCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAAAGGGGGTAGGCACACCGCACACCGGGGTCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACCCCTGTGGCCACTTTGCCCCGGAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTAAGAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GCGAATGGTCGCGCGGCTCGCACCGCTGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGTCATCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGCGATGTGAAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGCGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACACGGTGGCCACCCGCACTCGTCGCCCACAGGAACCACAGACTCACGGGCGGTTCGGTCTCCGCGGTCCACAGGCGGGACGCGTGCTCGGCGGTCTCGTCATGCTCGCCCAACTCGCATAAGACATAGGGCTTGTCTTCGAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCAGCAC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26218-26552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFF01000037.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2932 contig37.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 26218 30 96.7 31 .............................A CCGACACGATAGAGCTGCGCCGTTTCAGCCA 26279 30 96.7 31 .............................A TCGTCGTGCGGCCCGACGCCGACGGCAGCCT 26340 30 100.0 31 .............................. TTCGGGTTCCCTCGGTCTCCAGCACGATCGG 26401 30 100.0 31 .............................. CGCCGTTGTCGATGCTGTCACGCAGGGCTGC 26462 30 96.7 31 ......G....................... ACGGGCTGATCGATACCGCCCCGCGCCGCCA 26523 30 93.3 0 ..............T..............A | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : AGGTCGACGCACTGGAAGTAGCTGGGGTACGTCGTGGCCCCCCAGCACGCGGATCCCCCGCCACAGCGGACGGCCGCAGGCAGGGCAGGCCCCGCCGTACGTGGTGGAGGCTGCCCCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCGCCGCGCCCAGCGGACTACGTCGCAGGTACCGGTTGGCCACCGTCTTCCGCCTGATACGCCCCCGAGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCACGACGTCCTCCTCGGATCGCGCCACCCGCAGGAGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 172703-172149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFF01000009.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2932 contig9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================= ================== 172702 29 100.0 32 ............................. TCGACGACGTCGCCGTCGGTGTGGGCGAGGCC 172641 29 100.0 32 ............................. GTCACCCGGCCGCGCCGGGCCCACATCCGGTA 172580 29 93.1 32 ............T...........A.... TTCGAGCGTGGTGTCCTGACGTTCCGGGCCGA 172519 29 86.2 32 ...........TGG............T.. AGCAGGGGCAGGAAGTCCAGGACTGCGGCGCC 172458 29 69.0 135 ............T.GC.T......TGAAT GCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCC 172293 29 55.2 2 .A....GGG.A...TCA..A..C.TG.T. AC Deletion [172263] 172260 29 65.5 53 ...T...T....TT.TG.A......GGG. ACGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCT T [172250] 172177 29 58.6 0 C....TG.....T...TCCC..C.CG.G. | ========== ====== ====== ====== ============================= ======================================================================================================================================= ================== 8 29 78.5 46 GTGGTCCCCGCGCACGCGGGGGTGGTCCC # Left flank : CGACAAGATCCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCACCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCAACGACACCGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAGCTCCCCGACCACCACACCCCTCGTCGGGCAGGCCGGGCTTACCGCAGCCCCGGGGCCCACGCCTGCGAAAGGCCAGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAACCGAACCACACGTGACCACACTGCGGCAGAAGGTGAGATATGTCGGCTTCTCAAGAAGTAAGTAAACACCGCCTTCTCACCACCTAATCCCCCAGGTCACGAAGA # Right flank : TGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGACCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCGGTGAGCCGAGCGGCGGGCCCTGGGGAGAAACGCGCGGAGAGTTGGGGAGTCGGGGAGTTCCCCGAGTTCCCGGAGGTGCCGGGCCCGATGCCGGGCCCGGCACCGCGCCCTTCTGCCCCCGGCCCGGCGGCCCCGAGCGCCGCTCAGCGGCCCTCGCACTCCGTCAAGTCCGGTCGGCCCGGCGGGTTTTCGTTGCCCACCAGGCCCGCCAGGTTCTCCTTGTACATGTCCTCCCAGATCCTTCCGGCCAGGATCGTCCGCAGCGCCGAGCACACCTCGTCCTTGAGCA # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:3, 3:0, 4:-0.07, 5:0, 6:0.25, 7:-1.96, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [25-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //