Array 1 3788-4043 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRZZ01000027.1 Ruminococcus sp. AF13-28 AF13-28.Scaf27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3788 37 100.0 35 ..................................... GTTTTTCTTCATAGTACATCGTTCCTTTCTTCTTT 3860 37 100.0 37 ..................................... AGCTATTCATTTTTCAGATCAGAGTTATATGACGGAT 3934 37 100.0 36 ..................................... TTGAAGAGCTGAAGGTAGTTCTAGTGTTATCAGATT 4007 37 97.3 0 .........A........................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 99.3 36 GTAGAAATGGAAGTAAGCCCGTTGAGGGCATTGACAC # Left flank : ATTTTGATGATTATTCATTGGACGAAGTATTGAAAAAATCTAAAATACGTGTTAAATGGAATGAAAAATTTGAACAGATTCAAGATGCCAAAAAAGAATTTTTAAATTTAAGAATTGTAAGATAATACCAAATTGAAAAACTTAAGTTAACTTGATTTATAATATAAATAAATGTTAGCGTCGGGCGGACTTTCGTGGTCTGACACTGCGAAGTACAACTAAAAAGGATAAAGCAGAGCTAAAAGATTTATAAAAGAATTATAAAATCGGAAATAGAGTGGAAAGAGAAGAAAAAAGCCAGAGAAAATTTGGTAGGAAATTATAGTGCGAGTTTATTGACAAAAGAGATAAGAGGACATATGATAGTAGTGTATGAGCTGAAGGATTTTTAGACGAGCACTAAAAAAACAGTAAAAATAGTAATTTACAGAAAATTCAGTTAATTACTTGTAAAAATAGCTCTCGGAAGCCAGTAAAATCAAGGGTTCCGAGAGGCTACC # Right flank : CACTTCTGGCAAGGATATCGGTGATTGCATAGTCAACAGTAGCTGAATGCCTGGGTCAGACCGTGCGTCCAGCAAAGGGAATGCAATCCGACAGGTGGAAATCCTGCCAAATAAGCTGTTAACCACAGCATTTGAAGCGAGTTTTGGGTGCGTTGCAGTAATGTAACGTGCTAAGCGTAGACAGCAAGGTAGTAGGGATAGTTATTGAGCACCGAAATCCCAAGTATTTCCAGAGTGCCGACTCTGAAGGATATTGAAGTCTGACACTATGAAGTACAGACGCTCATGCATTTAAACGTTACGGAAGTTCTAAGAGTAAAGTATTCGGCAAATGGTCCAATATTAAGAAAGTTGTTGTGAAATAAAAGTATGTCGGGGTCTGACCCCAATGTTGGGAACTTAGCGTCAACTTAAGGACTTTAAATCGATTTATTTGTTCTTTGAAAATCAAATAGTAAAAATATACAATTTCGAGCGTAAAATATCAGCACTATGTCTAC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGGAAGTAAGCCCGTTGAGGGCATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 7282-7902 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRZZ01000004.1 Ruminococcus sp. AF13-28 AF13-28.Scaf4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 7282 36 100.0 30 .................................... AATTTACGATGCTGACCCGGAACAGTGGGA 7348 36 100.0 30 .................................... GTCTCGCCCTACGGCATAGGGCAGGCTATT 7414 36 100.0 29 .................................... CTAACAGAGAATGGTTAGAACTGATTGAA 7479 36 100.0 30 .................................... AAACGTTATCTGATTGCAGACGCAGCCGCC 7545 36 100.0 30 .................................... GATGTATCAAAATCGGCGTACATACCGCGC 7611 36 100.0 30 .................................... TAGACAGTCGTGGAATTGAGCGAGAGACAA 7677 36 100.0 29 .................................... GTGTCATCTGGATCATCTTTAAGACCATG 7742 36 100.0 84 .................................... TAAAAAGTTGAAACGCTCCACACCCCCTTTGTTTGAGAATGATGTAAATAAAAAATATTTTCGATGAAATTTATCGGGAGTGAT 7862 35 91.7 0 A............................-.G.... | AA,AAA,A [7887,7890,7897] ========== ====== ====== ====== ==================================== ==================================================================================== ================== 9 36 99.1 37 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : AATTATAAATAAACTGTATTCAGAATTGGTTAAGGTATCCGCATCAGAAGTGATGTATGAAAGGACAGCAGAACTTACCAGATATATATCAGATTATATTATGGATTTGGAAGACAGTGCAAATTATGCAGTTCAATTTTCTGATCGCTTGGATATAGCTGGTCTATTAAAAGCTATGGATGTAAAATATGAGGAAATTGAAGAATCATTGTTAGAACATCTGATAAGATATATAAAACTTGTTGTGGAATTATTAGGAGTGAAGCTTATTATATTTGTGAATCTCAGAAGCTATTTAAGTGACCGACAATTTAGGGGGTTAATACAGGAAATAAAATATCAGGAAATTAAAGTGTTATTTATTGAAAATCAAGAAAAGGCTTGTATAGAAGGGGGAATGCGATATATTATAGATAAAGATGGATGTGAAATTTATTAATGGTGGTTTGAGTACCTTATTTTGTATATGCAAGTGATGGCATATTATTTTTGAATTTGAG # Right flank : CAATAATTAGACCAGAAAAGAAAGTGTAGGACAATAAAATGAAGTTAGGTATCCTGGGAGCAGGAGGCATTGCTTCTACTATGGCGAAAACAGTGGCAGGAATGAAAGATGTGGAGGCGTATGCGGTTGCTGCCCGTGATCTGGAACGTGCCCGGGTATTTGCACAGAAATATGAAGTAAAAAAAGCATATGGATCCTATGAGGAAATGCTGGCAGATGATGAGGTTGAACTGGTTTATATCGCAACTCCTCATTCACACCATTATCTGCATGCAAAGATGTGTCTGGAAGCGGGAAAGCATGTGCTTTGTGAAAAGGCATTTACTGTAAATGCAGAGCAGGCACAAAAATTGTTTGACCTTGCAAAAGAGAAAAAGCTTCTGATCACAGAAGCAATCTGGACAAGATATATGCCGTCCAGAAAGATGATCAACGATATTATTGAAAGTGGTGTGATCGGAGAAGTTACGGCAGTTACTGCGAATCTCAGCTATACAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 21027-21487 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRZZ01000008.1 Ruminococcus sp. AF13-28 AF13-28.Scaf8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 21027 30 100.0 40 .............................. AAAATGTCGTTTACCATGATTTCTAATGTCATAATGGTAG 21097 30 100.0 42 .............................. GTTTGGGGATAGATTAATTATTCAGATTTTAAATTTTTAAAA 21169 30 96.7 49 A............................. CTTCAATGATATTTTCAATGAAGCATTTAAAACTTTCAGTATCATCGAG 21248 30 100.0 43 .............................. ATACTCAGCCTCCAATTCCTCTGGATTAACATGCAAGATTACT 21321 30 96.7 45 ....................A......... AATTTACTATGATAGCATAAGCTCCATCCAATTCCGATTTTCTGT 21396 30 100.0 32 .............................. ATAAAAAGTGTTTTTGACTGAATTAAGAACAT Deletion [21458] 21458 30 90.0 0 C................A..........G. | ========== ====== ====== ====== ============================== ================================================= ================== 7 30 97.6 42 TGTTGTACCGTACCTAAGAGGAATTGACAC # Left flank : GTATGGTAACCCAGGGACTTGGATATTCAGGCAGAGCCGTTTTCTCCGGCGTAACAGAAATGATCGCCAGAACAGTTGTCTGTCTTGGATTTGTAGGCACTTTTGGCTTCACAGCCATCTGCTTTGCAGACCAGACTGCCTGGATCACAGCAACCTGCTATATTTTCCCGACATGCCTGTGGTGTATCCGAAAGTCTGCAAAAATGCTTGTCATCAATAAAAAGTCCGTCGACCTTTAAAACCAGTAAATACAAGGGTTTATGGGAATTGTAAAGGAAAGAAAATTACAGATTAGGATAGAAAAAAGCTGAAATATCACAAAAAAGACTGTCGACTTCAAATGAGAATTTTTTGATGTAGAAAAAGGTCTGGAAATACTGAATTATATGGAAATAATAAGTGTCAGGCAGGAAAATAGGTCGACGGACTTTTTGGAAGAAAAATGGTTGAATTTCTGAAAAAAATATAATACTATATTAATAATAGCAGGAAAAGACTGC # Right flank : CATGTCAATACCCAAAGTGAAAAACAAAGGTAATTTACCTAAATACGAGAGTCGTATCGTATCGCATATTTAAAGTAGTAATGAAAGGTTTAAAATATTTATAAAAGCATGTTTAAGAGATGGCATTTTGAGGACTTTTGTTTATGAGTAAGCAGCGAGTTAAATAGAGGGCATTCGTTTAGTTACAGGAGTATAATTGTGGAAGTTAGGATTGAAAATATTCTGTCTGATGAAAATCTGGCATTGGCAAGGGAATCTTTACAGGGAAAGCGAGATAGCTGTGGACTTGATGGAATCAAAATATCAATGTTTGATGATTATTGGAAAGTAAATGGGGATAAGATAAAGCAGGAAATTTACGTCGGGAAATATGTTCCCGGCGTTGTTAAGTTACACGAAATTGTTAACGTGAAACAAAAAAGACGCAGTATTTCATTGATGAATACGGTGGATCGTTTTATATATCGGACTCTTATGCAGGAGATGAGTCGTTTTGGAGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGTACCGTACCTAAGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 22411-23131 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRZZ01000008.1 Ruminococcus sp. AF13-28 AF13-28.Scaf8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 22411 29 100.0 34 ............................. GCTATAATCTGATAACCTAGCTGCCTAGTCTCAA 22474 29 100.0 43 ............................. TAGACTGAGTAACTGGGATTTCATTCGGAGACTGGGTTTGCAA 22546 29 100.0 41 ............................. AATTCTGTTGTTATGTACTGCTACATTTATTCTTGTTCTTC 22616 29 100.0 35 ............................. AGGTAAACCTGGCTTTTCATCGTATTTCTGAGGAT 22680 29 96.6 40 ...........T................. CTGAAGGAATCATTTTATAAAGATTGTGTACGAGTGATAT 22749 29 96.6 40 ...........T................. CTGAAGGAATCATTTTATAAAGATTGTGTACGAGTGATAT 22818 29 100.0 42 ............................. ATGTAATTTCCTTCTTTCTTATAATCGTATGGCATCAAAAAA 22889 29 100.0 46 ............................. TATAGATAAGTCCTTTTGTAAGTAATTTCTGTATTACTTCCTGACT 22964 29 96.6 43 C............................ GTTCTTTCTGTGTTACAGGATCATATTCTGCTTTGTAATTAAA 23036 29 100.0 38 ............................. TAAATACTCATAGTATCTTACGTATGTTGATGTTAAAT 23103 29 93.1 0 ..........................T.T | ========== ====== ====== ====== ============================= ============================================== ================== 11 29 98.4 40 GTTGTACCGTACCTAAGAGGAATTGACAC # Left flank : GCAGTATTTCATTGATGAATACGGTGGATCGTTTTATATATCGGACTCTTATGCAGGAGATGAGTCGTTTTGGAGAATAGTAGATAGAACTTATAGGGTTATACAAGGAAAAGAACAATTACTTTTAAGAAAATTGGAAGAAGTATTTTGAAGTTTTGATAATATACATAATGTAACTGTTTGAAATACAACAATAAGACACATTCATATGAATGAAAAAAGTCCGTCGACCTTTAAAACCAGTAACCATAAGGACTTGCGGGTGATGAAGAGGAAAGAAAAATACAGATTAGAACAGAAAAGTGCTGAAATCTTACAAAAAAGACTGTCGACCGAGAATGAGAACTTTTTTAATCTGGTAAAAAGTCTGGAAATACTGAATTATATGGAAATAATAAGTGTCAGGCAGGAAAATAGGTCGACGGACTTTTTGGAAGAAAAATAGTTGAATTTCTGAAAAAAATATAATATTATATCAATAATAGTAGGAAAAGACTGCT # Right flank : TGGGGTAGGACAATCATAGTTAATTATATAAGTAAGAAATATTTGAAAAAATGTTAAGAAGTCATTTTCTTACCCATATGTATAAGTGCAGCAGTAAAAAAGAATGCAGCATAGGACTTAAACTATATCTGTAAAGTGAAGTTTGAGACTTTTGCATATTGGAGGTTAGAAGAAATGAAGAAAAAGCAGAATGCAGATAAACTGAAAATATATAATGCGAGTCATGGAACAGAACGAAAATGGGTATTGGAAAAAGGAAATGTATGGACTCGACCTACTATGAGTATGGAATTAAAATCTCAATATCATAGAGAACGCAGTAAGAAAGAATTTAGAAAAAGGCTGGAAGAATACAAGAATTAAAAAAACTGCTTCAACAACACCTGCTAAAAGTGACATTGAAGCAGTAGTCATAAATCAGGAAGACTGTTTATTTGGGTTTAGTGCATCAACCCATTTCATGTAATACTTTAGTGAGAGAATGATGGCCTCCGGTTGAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACCGTACCTAAGAGGAATTGACAC # Alternate repeat : GTTGTACCGTATCTAAGAGGAATTGACAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //