Array 1 5957-4931 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYYZ01000046.1 Lactobacillus jensenii strain UMB639 NODE_47_length_11303_cov_18.502147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5956 36 100.0 30 .................................... TGTTGTCTTTTGCATAATAATCACCTAAAA 5890 36 100.0 30 .................................... TATAAGAAGAAGTGTATCTGGGATTACGAG 5824 36 100.0 30 .................................... GCCTGCGCCTGTCCCATTGTCTAATTCACA 5758 36 100.0 30 .................................... ATTTCCCGTCGCAAGTGCTGACCCTTATGG 5692 36 100.0 30 .................................... TTGATTGACTCCACTCGTTTGCCCAGACGC 5626 36 100.0 30 .................................... CTTTCAAACCTCTTTTAGCCTGTGGAAGAT 5560 36 100.0 30 .................................... CTCAGATGAAGAAGACAAAGACAAGAATGC 5494 36 100.0 30 .................................... AAAGTGGAATTTCAGTTGGACTCTTTACAT 5428 36 100.0 30 .................................... ATACCGTGGAGATTTGATTAACTGGTATAC 5362 36 100.0 30 .................................... TTCCTTTATTTAGCATCGAAGCCCTCAGAT 5296 36 100.0 30 .................................... AGAATACATACGGCTCATCAATAATAGAAA 5230 36 100.0 30 .................................... ACTAGCAAAAGAATTTACTACTATCACTAT 5164 36 100.0 30 .................................... TAATAATGTAAGCTAATTAATAAGAAAACG 5098 36 100.0 30 .................................... AGCGCCTAAAAGAGCTGCAGTAATTTCAAT 5032 36 100.0 30 .................................... TAAAAGTTGCTTTTTCTTTGATAAAGCCTG 4966 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : CACAAGATTGTCTTAATTCTTATCTAACTAAAATTATTTCAAATTTATTTGAGAATATAAGTGAAAAGCATCGGAATAGAATATTTGATAAATGGAGGCAACTTAGCACCGATATTCAAGATATAATCTTTATGACTGACTTACCAATTGAAGTCAATGAAAATGTAGATTTAAAAAAGTTATTTAAATTTGATGGAATTCATTTTGATGATTCTGTACTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAATGTAAGTCATTATCTTACAAAAGAACAACTGAATAACTTAATTACCTTTGTAAAAGAAGTAAATGTACCTTTGATATTAATGGAATTTTCATCTCCGAATTTTAAGGTTGTTAGTGGGGATTCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTACAATCTGAGAAGCTGATGATAAAACGTCG # Right flank : TGTTAAATTTAAAACTACGTATAACAAAAAGTTTTAGAAGGTTGTAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGTATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATATGTTTTTAAAAGTTAGGAATTATCAATTTAACTCTGTATTGACTATAATTATTTTGAATGATAGCATAGCAAGAAGGGAGCTAAGCCTAGCTCCTAAAAAATTATTATTTAGTCATTTTATAAATTACTAATAGTTGAGTGATTATAATCAGTAATTTAATAACAATGTCTAAGCAGTCTTTTATAACGGCTATTCTATAGCCGTTTTTATTTTTGTGCTTTTTGTTTTAAAAGACTAGCGAATCCATGATTTAACGAACTCCGCTATTTGTATAGCGGAGTTATTTTTTCCTCTCAATTTAATACAAGTACCAAAGAACTTTGAAAATAATAGCAATTGGTCTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //