Array 1 42521-44207 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPI01000006.1 Streptococcus oralis strain BCC26 D8803_contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 42521 29 100.0 39 ............................. AAGGTTCTACCTCCAAAAATTTTTTGATTTGAAAATCTG 42589 29 96.6 50 .................G........... CGAAGCTTTTCATCTTTTACGAAAAGCCTTTCCAGTTCACAGCCTTGCTG 42668 29 100.0 46 ............................. TTAACTTTTCCAGTTTGATTGCAAACACTACAAGGAAAAGTTCCTG 42743 29 96.6 37 ..T.......................... TTATCTTCGACAATTCCAGTTCTGTTGCAGACTTCAC 42809 29 100.0 39 ............................. GCAAACTCTGTTGACTTGTTTTCATCACTTGCACTTTCG 42877 29 93.1 44 ..TC......................... CCTTGGTCAGGTTTTTCAGGAGTCGGTTTTTGATCTTGACCTTG 42950 29 96.6 46 ..T.......................... TTAAGAGGATTCACTCCCTTGATAATCTGAGCCACATCAGACGTCA 43025 29 100.0 46 ............................. ATATTAGTGTTCAACCACTGACCATCTTTGGTTTGAGTGGTCAACT 43100 29 96.6 38 ...C......................... TTAACCACCAAGTCCTTCGTATCACCAAAAATGAAATC 43167 29 96.6 52 ...C......................... ACACTTGCTTTTGCAGTTTCCACTTTCTTCTCTGCATTTTGGATGGCTTCAG 43248 29 96.6 47 ..........G.................. TCTTTGATGATTGGACGGATCTTATCTTCTTTGATCTTGTTCTTGTC 43324 29 96.6 46 ..T.......................... TTCCATTTGTGGAATAACTTTCTCAGCCACCCAAGGGTTTACTTCC 43399 29 89.7 32 ..T........................TT GCTCACTCTCTGTCTCCTTTGTGATATAATAG Deletion [43460] 43460 29 100.0 48 ............................. TCGTGCGCATATAAGGCACGACCAAGGCTGCTGATCGCACTGATATAA 43537 29 96.6 40 .................G........... GTTAGAGTCCCAAGATATTTACTAGCACCTTCTCGGAATA 43606 29 100.0 43 ............................. TTATTAGTCCTCTAGAAATAGCGCCTGTCTTTCTCCAAATATC 43678 29 96.6 41 ..T.......................... CTTCTTCGGCTTAGGGATTTCGATGTTTTCTTTCGGAACCC 43748 29 96.6 46 ...............A............. TCAACGTTTTGAACTTTAAATGGTTTGTTGAAGAAATCGTAGTCGA 43823 29 100.0 43 ............................. TATCCATTATCAGGATTTTCATATACTTCACATCCATATACAC 43895 29 96.6 42 ...............A............. TCTGTTTCTGAAAGAAAGTTGCCTGCCTTTAATGAGTCATCT 43966 29 100.0 42 ............................. TTTTTTCTGATAAATTCCAATGAGTGTAAATAGCAATACTAC 44037 29 96.6 42 ...........................G. CGTCAATTCTGATTTGACTGCAATTCGTTCTTCCATTGGAAC 44108 29 100.0 42 ............................. TTTATTTAGAATACCTTGAAGATATTCTAGCTCCTCTTGATC 44179 29 82.8 0 ..T......................GTTG | ========== ====== ====== ====== ============================= ==================================================== ================== 24 29 96.9 43 GTAATACCTTACCTATAAGGAATTGAGAC # Left flank : TACGCCTCATAGTGACATCATCAAGAATCCTATTCCAATCAACTGTCTGAAGGTTAAGCCTGGAATCTCTTTTGAATTTGGCTTTTATCTGAAAGATTGTCAGCTTTCGGATGGAGTTCAAATTACGGTTAAAGAAAAAATAGAGTTATTTAAAACTATCTTGACTGATGTAGGCATTGGCGCTAAAACGAATGTTGGTTTCGGACAGTTAGAGTAGTAGTGGTCCATCGACAAGGGTATTTACAAATCGTATCTGAGGGAGTCACGCAACTCACATAGCTCAAAAAGGTATAGAGGAGCTTGTTCATATTAAGGAGCCTGAATATAAGAACGCATTTACAAAGAGCTTAGAAACGAGTGAAGTCAGCTATTGTACAGGAGTTCAATCTTAGTTGGCAAGGGCGCTAGGACAAAAAAGATCGATCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTGTTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GCTTCAACTGAAAAAACTTGCGAGAGCAAGTTTTTTGTGGTATATTGGAAGTGCTTTCATGTTGAATGTCTTTATCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTTTTGCCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCCAATTGGAAGAAACTCAGCCAAGATGCCAATGAACTCCCCTATCTGAACGTAGAAGATGGTGAAAAAAGCGAGCGATTAAAGTACGCTTATCGCCGATATTTTAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTAGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATTGACAAACTTGAGTGTTATGACCTGACGCTTGACTATATCATGCTTCGTTATTTACCAAATTTAGAAGCAGGTTTCCTGATTTTCTCAATGGAAAATCGTCTCTATGATAAATT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 45910-46232 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPI01000006.1 Streptococcus oralis strain BCC26 D8803_contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================== ================== 45910 25 100.0 46 ......................... CAGTCATACTTCGTGAATCCATAGGAAGCTGTAAATAGGTCTGTTC 45981 25 100.0 52 ......................... TTTTATTGATTACATCTGTACGTCCTGCATCTGAGAGCACATGGTACAGTAA 46058 25 100.0 47 ......................... GTGTGTTGTCTTTCATAAAAGTTCTTTTCATTTTTATACCTCCGTTC 46130 25 100.0 53 ......................... AAACCTGAATATGTACTTAATGTATCATAATCCATGTTATAGCCTTTAAGTTC 46208 25 84.0 0 .....................GCTG | ========== ====== ====== ====== ========================= ===================================================== ================== 5 25 96.8 50 TACCTTACCTATAAGGAATTGAGAC # Left flank : AAGGCTTACACGACCTTTAAAAATCAATTTTTGCTTCCAGAGCTGTGCCCGCAGGAGCAGGCGGTGGAAATCTATGAATTGCTACAAACCTCACTCTATATCGAGAAGCATATCAATCTCCTGGACAGTCAAATCAGTGAACTGCATGCTATCAGCCAGACAGAATCAAGTAATAAATTGAATGGCAGAGTATTAATGCTGACTGTTTTAAGTCTTGCTTTAGCAGCTATTCCGAATATCAAAGAACTGCAGGATAATTGTTTGACAATATGTGATCTGAGTCTGACCTATTCATCTTGGCTTACTTTGCTCATTTCTCTTCTGACAATTTGTTTCCTTCTTTCGACAATTTGTTTCTTCTATTTCAAAAAGCGAAAATAAATGTATATTATCTTGACATACGATGTGCATCGCAAACGCGTGGCCAAGGTTTTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGTGAAAATGCTGTTGTAA # Right flank : GTGTGTCTTTGTCTGTCTCCAAGGCACCAAAAAAGCGAGCAAATTCTTGTCTGCTGGGAAGCCTGAGAATTTGTTCGCTTTTTGTTTTGTAAAAATTATCAAGAAAAACTCTCTTAGTAGGAGAGTTTTTTCCGTGTTTCAACCATGATAGTATAGAGTTTAAGTTAGATGGCTGGTCAGTTTTTTTGTTACTTCGTGATAGTGTTGCGAATATTTATTGGTCTATTAGGTTAAATTAAAAACATTCTGTTCTATTTCATTTACCGAAAAAGGCCTACTATCCAGTAGTCAATCCTACTGTACTGATACTTTTTCAGCTTATCTATGGTATAATAGAAGGTAGATTTATCAATTGGAGTATGAAGGATTTTATGATTAAACTTGTAGCAACCGATATGGATGGAACCTTTCTAGATGGAGAGGGTCGATTTGATATGGAACGCCTCAAAAACTTGCTTGTTTCCTACAAGGGAAAGGGGATTTATTTTGCAGTGGCTTCA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.29, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //