Array 1 52303-53446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000032.1 Sphaerospermopsis sp. LEGE 00249 NODE_47_length_53558_cov_29.3465, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 52303 36 100.0 38 .................................... TGCTGATATTGCCCTGGTGTTAAATTATGCTTGTACTT 52377 36 100.0 38 .................................... GATTATGTTGGCAAGATTAATCTCAAATAATCCCTCAG 52451 36 100.0 35 .................................... GCATTGCCACGACTCTAAACGGACGCAGAGACAGA 52522 36 100.0 39 .................................... ATTTAATCATATCCCAATTGAAAAATTAGAATTATCAAA 52597 36 100.0 36 .................................... TAGAGTCCTCTCACTGGCTTTCTAGACAAGCCTGGG 52669 36 100.0 39 .................................... ACCTAATCGGCGTTAGCCTTGTTCATGCGAATGACAAAA 52744 36 100.0 37 .................................... TTCCATGAGGAATTGGAATTGACCTTCTGCCCCTTCG 52817 36 100.0 38 .................................... TCAATGATTGAAGGCATCTTTATACAACCTAAACTAGA 52891 36 100.0 38 .................................... CTAAAGATTAAACAGAAGAAGGAAAGTGTGACTGGAGT 52965 36 100.0 35 .................................... TTGAGAACGTGCTTCTCTGTTTTGGGTCTTCCTTC 53036 36 100.0 41 .................................... TAAAGAGCAGTGCCGTCGTCGCTATGTCGAGTGTGAAGACG 53113 36 100.0 38 .................................... AACTAAAGCACTACAGGCTATAAAATCCTTTTCAGCAA 53187 36 100.0 39 .................................... ACAGCATTGACAACTTCAAACCATTGCCTATTAAAAATA 53262 36 100.0 40 .................................... GAATCAGACTTCAATAACTATACTTACGATATAGGTGAGT 53338 36 100.0 37 .................................... TTCAAGTGATAAGGAATGGTATCGCAACCATCCCCCG 53411 35 80.6 0 ........................G.-.G.TT..CT | T [53434] ========== ====== ====== ====== ==================================== ========================================= ================== 16 36 98.8 38 GTCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : GTGTTAGGTGTCATTTGTGCAAGTTTTACGTATTATTTGTCAATTATCGACCTACTGTTTTTATGGTAAGATACAAACGCTACATTTTTGATTATTTCTTTAATACACTATTTCAAAGCAATAAATATAAATATCTTATATAAATAAATATTATTAAAAATTGAGTTTTTACAATTACATTACTAATTCAAGTAAGATATAATACAGTTTTTAGCTCAATAGGGGTTGCTGAATAAAACTAAAACCTTGATAAATCAAAGGTTTGAAGTAGTCAGTGAGGAACTCCTGGAACTTCTGACTCCTTGATTATTGTGTAGTTTTTCCGAAGGTCAGGTAAAATGGCTGAAATATTGATTTTTTCGTTGCGAACTTCGGTCGCTTACTGGGTAACGGTTTCAGGGATTTTTTACCGCTGTTGGTTAGTTGTTTCACCACTTTTTTTCCTGACCTTCGGAAACTGCCTCTGGACACTTTACTGGGTAAGGGTTTAAAATGGAGGG # Right flank : TAAGAATGAGACAAAAAGAGTATAAGATTGAAGAGAGAAGGTATGGGAGTAGAAATCATGGCTTATAGTTTAGATTTAAGACAAAAAGTAATAGATTATATAGAAAATGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 42981-42657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000035.1 Sphaerospermopsis sp. LEGE 00249 NODE_50_length_50638_cov_35.194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 42980 36 91.7 36 ....A....C....................A..... TTTGTTTTATCGCTCCCATGAGCGAGATATACACCG 42908 36 97.2 36 .........C.......................... TTTCCACCTTGGTTGATGGTACCCAGATTTACTGGG 42836 36 94.4 35 .........C.......T.................. GGCACTTAACCCGCCTTTTGACACTACGACAGTTG 42765 36 100.0 37 .................................... AGGGGAATTAGGATGATTGCCAGTGGGGGCAAAAACC 42692 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 96.7 36 CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAAC # Left flank : CTTCGCCAAAATCAAAAATATCTTGATTTGTAGGTTGGGTTGAGGAACGAAACCCAACAAATACGTTGAGTTTACAGCAGTTTTCATGTATTTGTACCACATCCTTCTTGTTATCTTCCTTTCTTCCTTTGCGCCTTTGCGTCTTTGCGTGAGATTAAAAAATGTGGTTCATTTACCTGAAAATTGCTGTAAGTTGGGTTTCACTTCGTTCAACCCAACCTACGGGAAAGTGGCAAAGGTATTGTCATCTGTCAAAAGCTTGACATTTATGGCGATGTGTTGTATATATAAAAAGTGTATCAAGAACATCGACACACGTCCCCCGAACCTTGAAAACCTAATAAATTCGTTGACCTGTGTCGATTGCTTTTGTAGCAAGGCTTTTGACTCTTGAATGAGTCAGTTTTTTCTCAATAAGCACTGATTTTTTCTCAATAAAAAAAGGTGTGTAGATTGGGGTATCTGAAACCCTTGCTCTGTAAGGTTTCCAGAAGTGAACT # Right flank : AATTATTTACCAAAACCTAAATTAAAGCTTTGAGTAATGCTTGAAGTTTAAGCTGCACTTCAGCAAATTCCTTATCAGGATCAGAACCGGCGACGATACCCGCACCTGCATAAAGTCTAGCGCGATCGCCATCAATTAAAGCTGAACGAATACCGACAATAAACTCACAATTTCCCTTTGCATCTACCCATCCCAAAGGTGCAGCATATAAACCCCTTTCAAATTTTTCATAACGGCGAATTTCTGCACAAGCAATATCTCTATCTGCACCGGCAACCGCTGGTGTAGGATGTAATTGGGCAACGATTTTTAAAGGGTGGACGTTAGCAGGTACTACCGCAGTAATGGGTGTCCATAAATGTTGAATATTAGATAATTGTCGCAGACGTGGTGATAAAATTTGGGGAAATAAACCGAGTTGTGATAAACGTTGGGTGATAAAATCAATTACTAGGTTGTGTTCGTGTTTTTCTTTGGTACTATTAACTAAGTTGTTGGCA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 15824-13339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000087.1 Sphaerospermopsis sp. LEGE 00249 NODE_105_length_19237_cov_36.0873, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 15823 36 100.0 42 .................................... TACTTTAGTATCCCAAAAGAGCAGGATGAGCTTTATTGGCGA 15745 36 100.0 43 .................................... TTCAGATTCAAAGCTATCAGTTGAATCATTGATATTAGTTGCA 15666 36 100.0 37 .................................... TTGGTAAAACTTTGTCAGGTACTTATATTTGGATTGA 15593 36 100.0 41 .................................... ATAGTGCGATCGCCTAACAAACACCAGGGATTATCAATGAA 15516 36 100.0 37 .................................... CACGCATCTTCAAGTGTGTCTCGCGAAACTAGTGTAT 15443 36 100.0 37 .................................... AGTTTCCAGTTTATCGGATAACAGTTTATGATACTTA 15370 36 100.0 35 .................................... CTTAAAGGCAACCATCAAAATAGCCCAAGAAATCG 15299 36 100.0 35 .................................... TGAGAAACAGTGCCATAATCTGAACTCCAATTAGA 15228 36 100.0 40 .................................... TAAACCACCGGAAGCGTAGTAAGCGGGTGTCCAAATCCAG 15152 36 100.0 36 .................................... TTTGAATGCCTTCCTCATCGCTATTGATCATTTCAA 15080 36 100.0 35 .................................... GTCAAAAATTAGGAATAGTCAAGAATGTTACTCTT 15009 36 100.0 34 .................................... TAGATCACCGAAGTCGCCATCGGAACTATTGAAG 14939 36 100.0 41 .................................... CACCCTGGCTCTTCAGACGGGTTGGCGATCGCTATTATCGA 14862 36 100.0 37 .................................... TTTCTTAGCAGTATATACCGCTAATTGCTCATTAGTT 14789 36 100.0 42 .................................... TTTGTAGTGGGTCTTGCACCTCCACTGGTTCTGTGCCGCCGA 14711 36 100.0 36 .................................... ATCTTTAAGAGCTTTAAGGGTGTCTTCCTCTCGCTC 14639 36 100.0 35 .................................... GATTGATTCTATGTCCACTACAGGGGGTGGTTCGG 14568 36 100.0 39 .................................... CTCATTTTGGTCAGGTCTAAAGGGGATATCTACCATGTG 14493 36 100.0 36 .................................... CGTTGGCGAGGGGTGGTGGTAGCGTAGTCGCTGAAG 14421 36 100.0 37 .................................... GGAAGAACCGAGTACCCTTCGCTTTTCCCCCACAAAA 14348 36 100.0 45 .................................... ACGCGATCGCGCCCAAAACACGATACTTAGGAGACATTTCACCCA 14267 36 100.0 41 .................................... AGGAGAGAAAGTTGAGGAATGGTACAGCTATTATAGTGCAA 14190 36 100.0 34 .................................... TTCAGAACGCACCTGAGAAGAAGTAAACACCAAA 14120 36 100.0 40 .................................... TTGATAACAATGGTGTCAGGGTCATACTCAGCCTCACCCA 14044 36 100.0 37 .................................... CGAACAGCAAAGCGTTCTGCTTGTCATTGTTGAGGTA 13971 36 100.0 44 .................................... GTAGACTACTTTGGGGTAGTCTGTTGAATTGGGATTTTCCTCAA 13891 36 100.0 40 .................................... TTGGTAACAAGGCATCCCGTCACCTGAAGAGGTCGACGAA 13815 36 100.0 38 .................................... TCAGCCAGCCTTGCTGCTTTTGCAGCAGCTCTTTCGAG 13741 36 100.0 40 .................................... TGTACCATTCTTCAACTTTCTTTCCAATGTCTTTTACTAG 13665 36 100.0 36 .................................... TTAGGAATAGTGATCGCTCTTTTATCACTAAGATAA 13593 36 100.0 37 .................................... ATACTATCCCTTTCCAAACTCTATCGTGATAGACCCA 13520 36 100.0 38 .................................... GAATGGCTCTAAAAAAGGCGAGCCAAATATATCAGGAT 13446 36 100.0 36 .................................... ATCCGATGCCGCAACTCCGCGTTTTCTTTTTCTAAA 13374 36 97.2 0 ..................T................. | ========== ====== ====== ====== ==================================== ============================================= ================== 34 36 99.9 38 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TTGCTGATGTTTGTGTTATGTTTTTGTATGTGATTGCTTACGATATTCCTGATGATAAACGACGGAAAAAGATAGCTGATGTATTGGAAGGATATGGACAGCGTGTACAGTATTCTGTGTTTGAATGTCAGTTAAATACAGAAAAGTACAATGATTTACGTCGTCGGTTAAGGAAGATTGTTAAGTTAGAGGAGGATAATGTCAGGTTTTATCCTTTGTCTCGATATACTCTTTCCCAGGTGGAAGCGTGGGGAGTGGGGATACCAGTGATTGAAACGCCGAGTTCGATTATTGTCTAGTTGTTAGGGAGGCGCGGCGTTGGCCGAAGGTCAGGTAAAATGGCTGAAATGTTGATTATTCCGTTGCGAGCTTCGGTTGCTTGCTGGGTAAGGGTTATGGGGATTTTTGAACGCTGTGGGAAGGCAATCTGTCCACCTTTTTTCGTGACCTTCGGAAACCGCCTCTGGACTCCTTGCACTGTCTGGGTTTAAAATGGAGGG # Right flank : GTATTGAATGAAAACCACAGATCCCGGACTTCTCTAAGAAGTCCGGGATCTTCCTTAATGATCGCAAATGTCATATTAATTGAATGGAAACTGTGTTCAGTCCACGCCTGATTAACAATCTTGAGTATATCCCCACTCACAGGGGATATTAACTACATAACCAATTACCGTAGGGGTTTAGCACTGCTGAACCCCTACTTAATAACATTTGAGTATCAACAAATCGGCATAAAAATACACAATTTGCAATTAATGTCAAAAAATAAACAATATTTTTAATTAAACTAAATAAATACCTCAAAGCCTTATACACAAAGGATTTCAAGGTGATTTATATTGAAAATTAAATATTGTCAATCAATAGACAAATACTAAATCCCGTCATTACAATATAAATATTGGCTACACAGGGGAATCACCGATGACAGCAGAATATTGGCGGGCTAAGATTTGGGGGTTACTGCATGACCCTATACTGAAGGCATTACATAACAATAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 17340-17151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000051.1 Sphaerospermopsis sp. LEGE 00249 NODE_66_length_38506_cov_28.8312, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ===================================== ================== 17339 39 100.0 35 ....................................... CCGGGGGCGGGGGTCAGGTCAGCGTCACATCAGAA 17265 39 100.0 37 ....................................... TCTCCTAGTACACTAGAAACATTTTCATTAATTTCTT 17189 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ===================================== ================== 3 39 100.0 36 GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAACAA # Left flank : GACAAGTGATTTTCCAAGAATTTCACCTGCTGTTTATCAACTTCTTTGTGATCCCAATACTCAGGTATTTTTAAGCGTTGTCAGTATTTGGGAAATGCAAATTAAGTTATCCTTGGGTAAGATTTAATTTAAGTCAGCATTACCTCAAATTATTGAGGATGAAATCAAGCAAAATAAAATTTAGTTATTACCTCATTTTTTGATTTTTTTCCCCTTGAAAGAGGAGGTTTTAAACCTTGAATGAAACAATTGTCAATTATCAATTGTCAATTATCAATTGATAAAGATTTACATTTAGTAATCTTTGGTAATTTTCAAAAAATGTTGGTTTTTTGGGTTGACATCTGGAAGTTTTTGTTTTATTCTGTATTTATTGGCTGGAAACAGCAATCTGTACCTTAAAAATTAAATACTGACTTCGCTTGTTACATTTTTGTTTCCGTAGCTTGGCGCAAACGCCCCTTGAAAGCTATTTGTAACAAGGTCTCCATGAGTGTAGG # Right flank : AACTTGGGGAGAAAAAAAGATAGAATTACTAAAAAATGCGATCGCTTGGTTGTAATAAATTAGGACTTACGCAAGATGTGACTGAAAACCTTATTCTTGCGTAGGGGTAATTCATGAATTACCCCTACTTTCGTTCCCTGTTGCGTAAGTCCTGTGTAATTTAATCAGCTTTTGCAGTGCCAATACAAAAAATTGAACTTGCCAAAATAGACAATAAACAATAGACATCTCCAGAAAAGAAATTCTGGAACTTATTTATGGGGGCAAGGCGAAGCATTTGGGATATCTAGATGTCTGATTTTTTCGATAAATTATCGCCCTGTAAGGGCGAAGCATTCGGAAAATATCCTTTGGTGAATACCGATCATTAATCGCTCGAATGCTTCGCCCCTACTTCGCCCCTACAACTTATGACAAATTAATACATTCTATTGTGGAGATGTCTAATAAACAATGTACAATTGAAAATTATACTTACTGCAATTGGTTTTTTTGTCTCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 7376-2939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000058.1 Sphaerospermopsis sp. LEGE 00249 NODE_73_length_34601_cov_30.7945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 7375 23 100.0 49 ....................... CATTGTCGTGTTTTTGACCTTTTCTGCCATGCAGGGTTTCTAATTACCT 7303 23 100.0 55 ....................... CTCCCAGTGGGAGCGGTTTAGGACTTGTCCCTCTCTCCCCCGTTTCTAATTACCT 7225 23 100.0 49 ....................... TGGCATCTCTTTCAGCTAGGTTAGCGACGCTGTAGGTTTCTAATTACCT 7153 23 100.0 54 ....................... TTGCTACAACATCACGTTATTTGCACTCAAAACCAGATGAGTTTCTAATTACCT 7076 23 100.0 50 ....................... AAGACAACCGTTAAATTTACGTGATGTAAAAATATAGTTTCTAATTACCT 7003 23 100.0 48 ....................... CTAGAAACACAGCGTAAAATTGATAAATTATCTGGTTTCTAATTACCT 6932 23 100.0 50 ....................... AAATACTAGGGTGTCCGGGTTTGCCTATGAATAGGGGTTTCTAATTACCT 6859 23 100.0 50 ....................... AAGCAACATCTGGGATATTCCCGCCCAAGGGGAATAGTTTCTAATTACCT 6786 23 100.0 49 ....................... TTTATCCAATCAGGGATATCCCTGATTTTAGCCTGGTTTCTAATTACCT 6714 23 100.0 50 ....................... CAACGGGAACACAAGCCGATATTACTATAACTTATGGTTTCTAATTACCT 6641 23 100.0 50 ....................... TTGACATCTAAAGAGCGTAAAAGGCGACCATTATTCGTTTCTAATTACCT 6568 23 100.0 54 ....................... ACATCCCTGACACCCTCACAGATGAAAATATAGCAGCTTTGTTTCTAATTACCT 6491 23 100.0 51 ....................... AAAAGTAATGAAGGGTAAGAATAAAGAGGTCGTTTTTGTTTCTAATTACCT 6417 23 100.0 50 ....................... CCTCTAAAACAACAGGCAAACTCTTTAGGTTGGAAGGTTTCTAATTACCT 6344 23 100.0 54 ....................... AATACATTGTTCTAGTAGGAGCTTTTGTTGGCACTGAAAAGTTTCTAATTACCT 6267 23 100.0 48 ....................... GACTAGCAGACGCTTACATAACCTACAAGATAGAGTTTCTAATTACCT 6196 23 100.0 50 ....................... CCATAGGTTTGCTCTGAACTGTAAATTTCTACCACTGTTTCTAATTACCT 6123 23 100.0 47 ....................... CTTTTATCCATTAGCTGCACAGATAAAGGATGGGTTTCTAATTACCT 6053 23 100.0 49 ....................... TTGAACTAAGGCGCTTATATTTGTAATTATAGTACGTTTCTAATTACCT 5981 23 100.0 52 ....................... AAAACACTAAAATATTTCGCCTATGCCTGGAAGAATGGGTTTCTAATTACCT 5906 23 100.0 52 ....................... ACACTCTTCCGTTACTAAAACGGGATGTGCATTTACCAGTTTCTAATTACCT 5831 23 100.0 51 ....................... TTCCATTGCGTCCACCTTTTTGTTTACTTATTCTGAAGTTTCTAATTACCT 5757 23 100.0 50 ....................... AAATGCAGACTTCTGTACTTTTTAATGATTTGAGTCGTTTCTAATTACCT 5684 23 100.0 54 ....................... TTTTGTTACAACAAACGTAACTTCGCGAAATAAAACGTAAGTTTCTAATTACCT 5607 23 100.0 50 ....................... CTGAATATTGTAAATGGTTATTAGAGGCTACTTTGGGTTTCTAATTACCT 5534 23 100.0 54 ....................... TAGTTAGAGAAACTATTATTATTAGCCTTAACTGAAATAGGTTTCTAATTACCT 5457 23 100.0 47 ....................... TCGTTATCGCTAACTATGTTGACTGTGGAAATAGTTTCTAATTACCT 5387 23 100.0 50 ....................... AACTTACTACACTACTACCAACGTCTTCACACTCACGTTTCTAATTACCT 5314 23 100.0 50 ....................... ATCAAATATTAGAAGGGAAATACACTTTAGCATTTGGTTTCTAATTACCT 5241 23 100.0 48 ....................... ATTAGATGAGTTTTTTTTGACTTTAAAATCCTAAGTTTCTAATTACCT 5170 23 100.0 53 ....................... GTTTGATCAACGGCTAGAAACTCAGTCCAAGTCTTCAATGTTTCTAATTACCT 5094 23 100.0 52 ....................... CACACCAATAAAACGCTCCCCTTCATAGGGGATTCGGAGTTTCTAATTACCT 5019 23 100.0 50 ....................... CGTAACCAGTATATACTTCTAAAGTTTCCTCTACAGGTTTCTAATTACCT 4946 23 100.0 47 ....................... GCTTAAAAGATGTAGGCACTAGATTAGGTCAGAGTTTCTAATTACCT 4876 23 100.0 48 ....................... CCTTGCCTCCTGTTCCTTTACCCGCTTGGGTTAGGTTTCTAATTACCT 4805 23 100.0 55 ....................... ATTTTAAGGAATTAACGAAAACTGAAAGATATGCTGAAGATGTTTCTAATTACCT 4727 23 100.0 50 ....................... TGCTGTAGGGGATGTTGTCAGCATCCCAAAGTCAGTGTTTCTAATTACCT 4654 23 100.0 57 ....................... AAAAACTTTACGAACCATCAACAGGGTTCGTGTTTGAAGTTGTGTTTCTAATTACCT 4574 23 100.0 52 ....................... AATCTGGCAGTTCTCCAGCACCATTGTCCATCTATGTTGTTTCTAATTACCT 4499 23 100.0 53 ....................... GCATAACGCCCAAATTTCTCTGTGACAGCCATAGCCATGGTTTCTAATTACCT 4423 23 100.0 49 ....................... TATTTTTTGATGGGTATTTATATAAAAATCTTTCGGTTTCTAATTACCT 4351 23 100.0 49 ....................... AAACTAAGACAATACGAGTACCTGAAGCTTTAGCTGTTTCTAATTACCT 4279 23 100.0 56 ....................... GGATCAACGAATCGCGACGATTAGCTGCTGAAAATCGTCAATGTTTCTAATTACCT 4200 23 100.0 49 ....................... CCTAATGGGGTATGTATGCACTTACTGGGGTATGTGTTTCTAATTACCT 4128 23 100.0 50 ....................... TAAAGAGATATGAGGATGATTTGTAAATTAAGAGATGTTTCTAATTACCT 4055 23 100.0 49 ....................... TTAAACAGATGGATTGGAAAGATCATTCTCTCATCGTTTCTAATTACCT 3983 23 100.0 48 ....................... AGGATGTAGAGATTCTCAAATTCTCCTTAGATAAGTTTCTAATTACCT 3912 23 100.0 49 ....................... ACTACTATTGAGGCTACTTTATCTAGTCTTGGTACGTTTCTAATTACCT 3840 23 100.0 52 ....................... GTCAGTGAATAAAGTAATTAATGCGATCGCAACCGATTGTTTCTAATTACCT 3765 23 100.0 51 ....................... TAATCTTCCTTTGGGGGTTTAATCAAACTAATAACAAGTTTCTAATTACCT 3691 23 100.0 50 ....................... ATTAACCGAGCGTACCACTGACCCCCCTCCTGGTAAGTTTCTAATTACCT 3618 23 100.0 51 ....................... CGCCATCTTCACCAATGCCTAATTGAATAAAATCAGAGTTTCTAATTACCT 3544 23 100.0 51 ....................... AAACCTTTGCTTTTGATTTCAGTTTCTACCCTTGATGGTTTCTAATTACCT 3470 23 100.0 48 ....................... TTGCAGAGTTTCATGGCAAGGAATTGGGCGTTTGGTTTCTAATTACCT 3399 23 100.0 52 ....................... TGCCCCTATGATATTCTTGAGAATTACTGTTTCTCCCAGTTTCTAATTACCT 3324 23 100.0 50 ....................... GTGATATTGCCGAAAGCATTTTATCCCCAGAACAAAGTTTCTAATTACCT 3251 23 100.0 50 ....................... TTACCCGTGCCACGATATTGCGATCGCCCGTCAACAGTTTCTAATTACCT 3178 23 100.0 46 ....................... ATCGTTTAATTCCTTACTAGCTTTAGCGCGACGTTTCTAATTACCT 3109 23 100.0 51 ....................... GAAAACCAAAGGGCGATCGCTGCTCTGAAAATTGATTGTTTCTAATTACCT 3035 23 100.0 51 ....................... AAACAGGAGGACTTTGATCCTACAAATCCCAATCATGGTTTCTAATTACCT 2961 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================= ================== 61 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : GAAAAAATCAACTACTTGATATATAATACGGTGATATCAAGTATTGAATTGAGACTATTGCCGACGCGAAAACCAAGCAATGATGGTGGTAGTCTTTTTCAGAAACTTAATTGGAACACAATCGCGTCTGGCTAAGGCGTGAAAGTCTACTGAGGGATAACTGCTCCCATGCTCCCGTTGAAGTAGAAAGTAAAGTCTAGTTTTGTCTAGGTTTTATATAGCAGTGCGTAATTATTTGTAATAAAAAAACTCTTGACAAGTAGGTTGCTAAATTTTACTCTTAGATCAGGATAAATTTGGCAAACCTAGAGCGGGGTCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATAGTTCTAGCGTTTCATCAGTTTCAGTTGGCAGTTGACCCGAAGCCTGAAATGAGGTTTTTTCAGAGGTCCGCCAAATTCCCCCCTACAGTCTGCTCTCAGACTATGTTTCAGATGGCGGGGTTTCTAATTACCT # Right flank : ACCAGACTTGTAAAGACTGCCAAATTCTTCCCATCAGGGTTTGTTGGGTTTCACTCTGTTCAACCCAACCTACGGGATTTTATTTTTTTGTGCTTAACCAACAAGTATTGAAACAGATATTGCAAAGATAATTAAAGCCCAAAGATTAAGTTTTTCAGAACTTTTTTAAATTTAAGGCTGCATAGCTATAAAGTAATAGAAGTAAATTAATTTAACCAGTAATTTACAAGATAAAAATCGAGCAATTACAACTTTTGTCCAGTAATTTAACTGGTAATTTTTTTTGCTTATGTAATTTACATCAATTAGTAATAATTTATCCAGAAATTTTTCTCCCTTTTAAATTTTCTAGAAGAAGCAACATAGTTAAAAGTGGGATATTTTCCATCGTTGACTTTTCTGGTAAGAGTTAGGAGTTAGATTATGCGGATTCTGATGATTCAACCCAATTATCATTCTGGTGGTGCGGAAATTGCGGGAAATTGGCCACCTAGTTGGGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2326-1907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000070.1 Sphaerospermopsis sp. LEGE 00249 NODE_86_length_28838_cov_33.1062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================================================================================================================================== ================== 2325 36 100.0 43 .................................... CAGGGATACGATATTCATTAATTGACTCCGATGTTTATTGCAA 2246 36 100.0 36 .................................... CCCCACGCTTGTCTTCAGACAATTTACGTCTTTTTT 2174 36 100.0 196 .................................... AATTATTTTAACAGTGGTGGTTGTGATGGCGGTTGCAGTTAAAATTACTCATAAGCTGTTGTGCATTTAATTTATATAAGGTTAACAGGCAAGATGCCTGTTCCACAAGACTTAAGAATATTAAGATTATACAGTTTAGCTGCATAACAGCTTAATCCTGTAAATCCTAAAATCCTGGACATCCTGATTCAGACAA 1942 36 80.6 0 G...A.....A..A..A.......G...A....... | ========== ====== ====== ====== ==================================== ==================================================================================================================================================================================================== ================== 4 36 95.2 92 ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAA # Left flank : CAGATTAATGGCAACTTTGGCAACTCTGCCAGCAGCATCAGCAGGTCCGGGAGTTCCCACACCGATAGCTCTACTTTGATTATCTGGATCAACTTGTGCGATCGCCTCTATCATCTTTAATAATACAGCTTCTGGTGTTGCTGGTTGGGGAGTATCCACAGTTATAGATTGTAAACATTTACCATCTGTTGTAAAACGTCCTAACTTAATTGCCGTTCCACCTAAGTCTATACCGATTACTTGCTGCACTGTTTAATTCCTAAATCTTGATTTTATGACAATATATTTTAACGCAGATAAACGCAGATAAACGCGGATAGGGATTGATAAATTAATGGATTTCATGATTCTGTGTAGCTTCACATATTTTTGGTATAAAATCAAGGAAATAATTTATTAAGTATTTATTCTTATGGATATTTATCAACTTAAAAAAAAGGCAGATATTTGTTTACAACAAGATGATTTTACCACGGCTACTATTTAATTATGATATTGAA # Right flank : CCTAAAAATCTCTATTTTTGTTTTCAGAAAACACTCTTAAATACTGTCACCTGTCACCTGTCACCTCAAAAATCCCATTTCCTGCAAACCCTGACGCAACCTTTTCGCCTCTTGCGGATTATCTTTTTCATGGAGAGCGATCGCATATTCAAAAGCTGCCAAACTATTCTTCACATCACCCACTTTCAACAACACCACCCCTAAATTTTGATAAGCTTCTGCATAATTAGGATTTAAAAATATCGCATGATTATAAGCATCAATCGCCTCAACAAACAAACCCATTGCTTTACATACCATCCCCAAATTATAATACCCAATCACAAAACTATTATCAATTTTTAAAGCAGTTTCATAAGCATTTTTCGCCCCTGGAAAATCTCCTGTAGCTTTCAACAAATTACCCAAATTATTATATCCTCCCAATTTCAACAAAGGATAAATAGGTAATTTAACCGCCGCTTGATAATAAGAAATCGCCAAAGAATAGTTTTTCAAAT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 57365-56374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000003.1 Sphaerospermopsis sp. LEGE 00249 NODE_10_length_136001_cov_29.187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 57364 37 100.0 37 ..................................... CAATTGTTGTAAAACTTCTCCTTGCGCTGACGGCGGT 57290 37 100.0 36 ..................................... GGTAGTTCCCCGGATACTTTACGTGATAATTGTAGA 57217 37 100.0 33 ..................................... CTTAGAAATATTAGGAGATTTGATAAATTTTCG 57147 37 100.0 35 ..................................... AATGGTTCATTGTAGACAATGCAGTTTGGGGCGGG 57075 37 100.0 38 ..................................... CAATCTAAACTTAAAGGCGATGGCTCTACAAAAGAAAG 57000 37 100.0 35 ..................................... ATTTTCAATACGCATAGCACGGCACTTGCTACCAA 56928 37 100.0 36 ..................................... AGTATATGGTACAGCTACATGATATGAAGACCCGGG 56855 37 100.0 37 ..................................... TCTGACATATCTTTCTTAACCCAAGGGTGTGTGTTAA 56781 37 100.0 35 ..................................... GTCTAGAATTTCAGTGTCACGCTCGTCTTTGTTTC 56709 37 100.0 39 ..................................... AGGGAAAGAGTCTAACCACAAAGAAGGCATCCCCGGCAA 56633 37 100.0 40 ..................................... TGTATAGTCTAGCTGCTGCTGATACTGCTGCTAACGGAAC 56556 37 100.0 35 ..................................... TTGATTTTAGTGTTAGAGGATCTAGCGTTAAAGGA 56484 37 100.0 35 ..................................... ATTGAGGATTGAAACTAAACTAAAAGATAATGATT 56412 37 73.0 0 T.C.....A.GA......C.......CA......C.T | A,T [56391,56394] ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 98.1 36 GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Left flank : TGGTTGTGTGAATGAACGAGATTTAGCTTTATTTTGGCAAGCTTTGATTAAGGCTTGGGAGTTTGACCGTTCTTCAGCACGGGGTTTTATGGCTTGTCGTGGTTTGTATGTTTTTACTCATGCCAGTAAATATGGTAATGCTCCCGTTCATGAGTTATTTGATAAACTGCAAATTAAGTCTACTGTTGATGTACCCCGCAGTTTTGCTGATTATCAGGTTGACTTGGATGAGGTGTTACCTGATGGTGTGACTTTGACAAAGTTGGCTTGAAAATGCGCGGATGGGTGGGTGTTAAGTCGGAGTGATTATGATTAAGCTGGAAACTCTTACACTGTCTAGTTTTTATCCGTTGGGTGTTGTCAACCACCCGCGCACCTTACGCTGTAAGGGTTTCGGCGTTTTTCGCTCTTGTGCTGTTCTCTGAAATGGGGTATTATTTTGGCATCCGCGCAAATCGTTGTGGAAATGTCCTATTTCTAAGGGTTTGCGCGATCGGTTG # Right flank : GACAAAAACCCATACCACTCATCTAAACCCACACCAGTAGTAGCAGAAACCTGAAAAATTTGTATTTTTGGGTTTACCTGTTTTGCATATTCAATACATTTTTCTACATCAAACTGCAAATAGGGTAACAAATCAATTTTTGTAATAATCATAATGTCACTAGCGCGGAAAATATGAGGGTATTTAATTGGTTTATCCTCCCCTTCCGTCACCGACAAAATGACAACTTTAGCCTGTTCACCTAAATCAAATAAAGCTGGACAAACTAAATTACCTACATTTTCAATCATCACTACAGAATTTAATGGGGGGTTAAGTTCCTGTAAACCCTTTTCTATCATTGAAGCATCTAAATGACAACCTGTTCCGGTGTTAATTTGCACCACTTTACAGCCTGTAGATTTAATTCTTTCTGCATCATTAGTAGTTTCTTGATCACCTTCAATGACGCTAATATTTAACTTCTCTTTTAAATCATTAATAGTACGAGTTAATAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 4784-5109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000074.1 Sphaerospermopsis sp. LEGE 00249 NODE_90_length_26424_cov_29.3586, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 4784 35 100.0 37 ................................... TTCAGAGTGTAAAGTCCCCAAGGGGGGAGAAAACACC 4856 35 100.0 39 ................................... TCTTGGCTGTTAATTCAGAACGGACACTTGGATTAAGGC 4930 35 97.1 39 ..........G........................ AAAGACATACTGTATTCTGAAGGAATGGGAATAGCCGTC 5004 35 100.0 36 ................................... CTTATATATTCCTTGAAGAACCTCAAAGATATTACC 5075 35 94.3 0 .................T................G | ========== ====== ====== ====== =================================== ======================================= ================== 5 35 98.3 38 TTTCCAAATCAACTTCCCCGCAAGGGGATGGAAAC # Left flank : ACCTAAAAGGTTAATGTTGTGCAAACATAAGATTAAGTTTAGGTAAATTGTCAGAGTTGATAATTGACAATAGACCTCTCCAAAATAGAATGTATTGATTTTTAATATATTGTAGGGGCGAAGCATTTGGGCGATAATTTGACGGAAAAATCAGACATCTAGATATCCCAAATGCTTCGACCTGCCCCCATAAATAAGCCATAATTTCTTTTCTGGAGAAGTCTAATTGATAAATTAAACGCAGATGGACGCAGATAAACGCAGATAATTTTGTACTTCTTGAGATGAGGAAATACTATCTCAGGATGGAAAGTGGGATTTTTTGGGTGTTGAATGGGTGTTGAAGTAGCTAATGTTTAAGAAATGATAAGTAATATTGTCAATTTCAGGTGAGATGGGTTACTTTAACAAAAATGGTAAAAGTTTTTCGACACCACAAGCCCGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTGGATCGTTTACAGGATCAGCG # Right flank : GAAAAAATCTAAATAATAATGGATATTAATTTACAAAAAGAAGAATTTAGCTATGCTTACATTTATGCTATTACCACAGCAGCAGGATATTCCTTTCAAAAATCATCAAGAATTTTAGATGTAGGCGGAATTGATGCCACAATTACAGGTACAGTAACAGACGATACCCTTTATGAACCACAACTAGATTTACAGGTAAAATCTACCTCACTAGATATCCTCAGTGGAGAAACTATTCGCTATCCTTTAAAAATCAAAAACTACAACGAACTCAGAAAAGAAAGAACTGTTGCACCACGAATATTAGTAGTTGTTCTCATCCCTGAAAATCTGCAAGAATGGATTAAACAGTCAGAAACAGAACTGTGTTTACGTCGCTGTGCTTACTGGGTTTCATTACGTGGACAACCCCAAACACAAAACACCGAAACCGTTACTGTTTATATACCTCGCAAAAATGTATTTACAGTTGATGCTTTAAAAAATTTAATGCAAACAAT # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCAAATCAACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1561-1745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000081.1 Sphaerospermopsis sp. LEGE 00249 NODE_99_length_22316_cov_25.0231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 1561 30 86.7 45 AC.T.C........................ TTAAAATATTGCCAACCTCTGCTTTCATTGGCTAATAAATTGCAA 1636 29 96.7 51 .............-................ AAATTATTTTCTCTGTCTAATTCCTTTTGATGGTTCAAATACAAATTGCAA 1716 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================================== ================== 3 30 94.5 48 TTCAAATTACTCCCTATTAGGGATTGAAAC # Left flank : GGCGTTCCTAATATGCCCGGTGCTGTACCTTGGACTTCTACTCAAGCTTTAAATAATAGTACCTTGCCTTATGTTGTGCAGTTGGCTAATTTGGGTGTGAAAGCTTTAGAAGTTAACCCCGCTTTAGGTAAAGGTTTGAATGTGAAAAATCATCGTTTAGTACATCCTGCTGTACAAGAGGTTTTTCCTGACTTGGGTAAATAGGTGACAGGTGACAGTTTGCCTGTTGCTGTTTTTCTTTTGTTTGCGCGAGGGGGTGGGTGTAAAAAATGGATGTTGTCAAAAAATGCCTGTATCTCTTGATAGGCTTGACTTTGAGGCTATTCATGTTCTCTAGACCCTCGCGCACCTTACACAGACTGGGTTTCAGCCTCCTGCTATTGCAATTCAAATTAAGTAAGTCGGCTTGAAAAAACCGAGGTATGTTACAAAAGGTAAATCCCCTGAAAGTCTCTTCCCTCTTGCCTTTTGCCTTGCCATAACGATAAATTTTAACGCCT # Right flank : CCACCTATTGCATACATTTCCTTGCCCCTATTTTTTTACCCCCCTTATTTTCTCAAATTATTGCCACATCTCATCTTCAACCGTCTTGTCACCCGTTAAGGATGCTCCCATTAATTCTGGAAGGTTCTGCTTTCAATAATAGCAGATGCAGAGCCTCTATGATGGCATTCCTAGTCGGATACTGGGAAAGAGAGACGAGAGAACGGCTAAAGGCGAAATATAAGCAATTTTTATCTATTTTTTTATATTTCTCTTGTTAATGAATTGAGAAAAATTTGGTTACAAGAGCAAAAATTAAGAGATGATAGAGTTGATTGTATTAAAGGAAGATAATTGTCACCATGAATCAATTATTAGATGAATCACTGTCTTTGCAAATTGCCGAAAGTATCAAAAGTAAAGCGAAAAAACCTTTTGATAATGCTTATAAAGCAGTTTTAGTAACTGAGGGTGCAAAGTATGTTCAAGGTTTTATAGTTTTTAGTGGTCATCCATTCAAA # Questionable array : NO Score: 6.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:-1.5, 6:0.25, 7:-0.29, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAAATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10248-9851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000105.1 Sphaerospermopsis sp. LEGE 00249 NODE_126_length_12173_cov_34.615, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 10247 36 97.2 36 ............G....................... TCAAATCTCTGTAGTATATAAACACTACAGAGATTT 10175 36 100.0 35 .................................... CCATAAATTTTTATCTGCGAGATACCTGTAGAATT 10104 36 100.0 36 .................................... TTATAAATTAGTGAGATATTTGAAATCCTGCAAGAA 10032 36 100.0 37 .................................... CTCAAAGGAAATAGGATACAAATGACTAGATAAAATA 9959 36 100.0 37 .................................... AGCATCTGCTAAAATTATTTTTCCATTGCCTTCAAAT 9886 36 94.4 0 ...............A.......G............ | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 98.6 36 TTGCAATTTACAATACTCCCTATTAGGGATTGAAAC # Left flank : CATCCGCTGCATCTGCTTCTGCTACTTCACAAATTACCTCACCCGTAGCGGGGTTAATGGTAGCAAATTTTTTCTTGCTGACACTTTCCACCCATTCATTATTTATTAGCAGTTGGGTAGGACCTATTTTCACCTGTAGTTGTGGTCTTGTTGCTGTAACCATCAGACCCTCCTAAAATTTTAAGGCTTTTTGTTAAATGCTATTAAATTGGTTCCAGGAGTTACACAATTACGGCTAAATCTTTTATATATGTTTACATTTGCAGGTGTTTTGCGCGGATGGGTGGGTGTAAAAAATTGGTGCTGTAAAAAAATGGCTGTATCTCTTGATAGGCTTGACTTTGGGGTTATTCTGCTTTTCCACCCACCCGCGCACCTTACACAGACTGGATTTGGGCGTTTTTTGCTCTTGACACGATTCCTGAAATGGATTATGATGGGACCACTCGCGCAATCGAACCTTAAAAACTAAATATAGATAGGCTTTCAGGATGCCGCAT # Right flank : TTGTGCGAGAGGGAAGCTCGCGACTGCGTTATCATTGCAATTTACGGTGATTGGTGATTGGTGATTGGTGACTGGGAGGATGAATAACCCAATGCCCAAAGAATATTAAGATTGTAATAGTGTAAATATATTCTTGTGATGACTACAGTACAAATTGCATCTAGTTTATCGGAAATTGCCCAAAAAACCCGTTTAGCTGCTAGTAGGTTGGGTGTGCTTTCCACTGAGGAGAAAAATCAAGCGATTAATGCGATCGCTCTAGCTTTAGAATCTGCTCAGGATGAAATATTGGCTGCTAATGTGGCTGACTGTGAAGCAGCTATGGCGGAAGGTATTGCTAAACCTCTTTATAAACGTTTGCAGTTAGATGAACATAAATTAAGAGATGCGATCGCTGGGGTGCGTGATGTAGGAAAGTTAGATGATCCTGTGGGTAAAGTCCAAATTCACCGAGAAATTGATACTGGTTTAATTCTTAAACGTATTACTTGCCCTTTGGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAATTTACAATACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 730-177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000110.1 Sphaerospermopsis sp. LEGE 00249 NODE_132_length_11193_cov_29.2628, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 729 36 100.0 44 .................................... TTTGGGTAACGAAAACAACTCTTCAAAGGAAACAATTCTAATGT 649 36 100.0 35 .................................... CTTAAAAGAATGCTTGACATCATTGATCTCCTTCA 578 36 100.0 38 .................................... GTATAGCCATTTGATTTTAAATGGTTATACCGTGGGAG 504 36 100.0 37 .................................... TCCACGCTCTACAAAGATCACAAAGACGAGGAAGGGA 431 36 100.0 35 .................................... TACTTGTTTTATGTGCTTTTTCTCTGAATTTAAAT 360 36 100.0 37 .................................... TCTAGCGGGGGAATATAAGAAAGATGCAAATAATATT 287 36 100.0 39 .................................... ACCTCTAATTTAAGTGGTTTTTTAGAAGTATTCATACCT 212 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 8 36 100.0 38 GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Left flank : ATGAAGATATTACACAATCTTTTTTCGGGAAAATTCAACAACGTTCTGTTATTGAATTACACCGAGGTACTACCCTTGTTGGACCCCACAGGGATGAGTTAGAATTAATTATTAATCAAACTCCTGCTCGTCAATATGGTTCTCAAGGTCAACAACGTACTTTAGTTTTAGCTTTAAAATTAGCAGAATTACAATTAATTGAAGAAGTCGTTAATGAAGCTCCTTTACTTTTATTAGATGATGTTTTAGCAGAATTAGATTTATCCCGTCAAAATCAATTACTTGATGCTATTCAAGATCGGTTTCAGACTTTAATTACTACTACTCATTTGGGTGCTTTTGACTCTCAATGGTTAAAATCTTCACAAGTTCTCTTTGTCAAATCAGGAGAAATAGAGTTTCCTGAAAAAGTCTTTTCGTGAGGGAGTTAGGAGTTCCAGAAATTTTTTTATTTTGAAATTGTCTAAATATCAACAAGGTGCAAGCTTTTTTAGCTTTAC # Right flank : CCAAGCTCTTTGCTCCGAACTCTTAACGCCGAGTAACGTTTCCATTCAATTATAGTCATTTAACTTAAGAATGAGACATTAAGATACACAATAATCACGGATGATTTCATCTAAGGGTGTATTTGAAGGAGCATACATTCTGGCTCTCTTTAAGGCACTAAAATCATGCTCAATATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 88182-91082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000010.1 Sphaerospermopsis sp. LEGE 00249 NODE_22_length_93394_cov_34.7204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================== ================== 88182 23 100.0 49 ....................... AGCAACTGGACATTATCAATGCCGGATACGCAATGGTTTCTAATTACCT 88254 23 100.0 50 ....................... TAACCCAAACTGCAACTCATCAACATGAATACCATGGTTTCTAATTACCT 88327 23 100.0 50 ....................... AATACTAGGAGTTTAGCTAGGAATATTTCATGTCAAGTTTCTAATTACCT 88400 23 100.0 50 ....................... ATTTTAGAAATTCAAGAGATTCAGAAAACAAAACTGGTTTCTAATTACCT 88473 23 100.0 55 ....................... TTCCAATATTGGATATCGGTCATAGTTTTATGGGCATCTTGGTTTCTAATTACCT 88551 23 100.0 50 ....................... GTTAATGAAGCTGCTTAACAATGCAATTCCCCGTAGGTTTCTAATTACCT 88624 23 100.0 52 ....................... TCCACTACCTTCACCACTGCCAAATTTATAGCCGTGCTGTTTCTAATTACCT 88699 23 100.0 50 ....................... TACACCGCCACTGCTACCATTTAGTCGCAGAGATGCGTTTCTAATTACCT 88772 23 100.0 50 ....................... ATATATGGCTGTTCATCAATCGACATAGAAATCTTTGTTTCTAATTACCT 88845 23 100.0 51 ....................... TTGGCTATCCGTTTTTCCATTTAACCAATCCTCAAAGGTTTCTAATTACCT 88919 23 100.0 54 ....................... CTTTGTTAGTAGGTTATATTGAGTCAGTTGTCAATACAGGGTTTCTAATTACCT 88996 23 100.0 49 ....................... ACACCAAAATCATCTACCACAAGATTAACAAGCTCGTTTCTAATTACCT 89068 23 100.0 52 ....................... GTCAATCAGGCTGCCTCCCCTTTTAATAAAAAACCCAAGTTTCTAATTACCT 89143 23 100.0 49 ....................... TTTTGGCGATGGTTCAAAAACAAAGACAATGGAGTGTTTCTAATTACCT 89215 23 100.0 53 ....................... CTAGAACTCTTTTAGCTAACGCTACATCTTTATCTTTAGGTTTCTAATTACCT 89291 23 100.0 50 ....................... ACCAAAGAAGAATTTCACGCAGATAGAACTCTTTTTGTTTCTAATTACCT 89364 23 100.0 53 ....................... GAAACGTAAACAGTATTAAAGCAGGGATAGCTTACAGAGGTTTCTAATTACCT 89440 23 100.0 49 ....................... AATAATTAGTTTGTCAGCCACCCACCCATAAAAAGGTTTCTAATTACCT 89512 23 100.0 46 ....................... AAAAATTCTGGTAAAAAAGGCACATTTGTTAGGTTTCTAATTACCT 89581 23 100.0 51 ....................... GTTAATCAGGAATTGATTTAAATGACTTAAAACCTAAGTTTCTAATTACCT 89655 23 100.0 53 ....................... CAAGCTTCTTTGTCAATAGTTCTGTGTGGAGGCGTAGTAGTTTCTAATTACCT 89731 23 100.0 50 ....................... AAATGAGAGGATACTGAATAGCCACAAAAAGGGAAAGTTTCTAATTACCT 89804 23 100.0 48 ....................... TTCCATCTGTATGGGTATACGGTAGTTCATCTCAGTTTCTAATTACCT 89875 23 100.0 53 ....................... ATAATCCTGTTGCACCTGATACGATCAATCCCCAACCTAGTTTCTAATTACCT 89951 23 100.0 50 ....................... ACTGGGAAACATTACTACACTTTTCAGAAATATTATGTTTCTAATTACCT 90024 23 100.0 50 ....................... AGTGTTTGTAAACATTGGTATTTCATGTTTACCAAAGTTTCTAATTACCT 90097 23 100.0 51 ....................... ATCAGTTCCCATTGTTTAGTAACTAATTGTAATTTATGTTTCTAATTACCT 90171 23 100.0 50 ....................... ATTTATCATAATTTAAAGACGCAAAAGAACCCTGTAGTTTCTAATTACCT 90244 23 100.0 50 ....................... TGAGTTACAGCAGGGTTACCGTGGTTAGTCAAGACTGTTTCTAATTACCT 90317 23 100.0 49 ....................... GTTTTTTAGGTCGTCGTCCAACCCTGAATTAATAAGTTTCTAATTACCT 90389 23 100.0 49 ....................... ACTTACTCCGATAGGGTAGTTGAAAAAAAACTCTTGTTTCTAATTACCT 90461 23 100.0 51 ....................... AGAATTATAGATTTTTATATTAGTATTTGTGATTTGTGTTTCTAATTACCT 90535 23 100.0 55 ....................... AAATTGGACAAGCTCGCTTCATTCCGCATTAATTCTGAAAGGTTTCTAATTACCT 90613 23 100.0 50 ....................... AAGCCAAGCATCTCGGAGAGGGTGCGCCCTTCAAAAGTTTCTAATTACCT 90686 23 100.0 56 ....................... AGTACCTGTAAACATTGGTAATTTCATGTTTACTAAATCCCTGTTTCTAATTACCT 90765 23 100.0 55 ....................... ATAGAAAACCGTCTTGAGTCCGACTTATTTAGCACGCCAAAGTTTCTAATTACCT 90843 23 100.0 48 ....................... AAACACCGTTACCTAGAATCGTTGTTAGGTATGGGTTTCTAATTACCT 90914 23 100.0 50 ....................... AATTATCAAGAGGATAACAGTGATCCTTATTTGTTTGTTTCTAATTACCT 90987 23 100.0 50 ....................... AAATTCTTCATGGATAGCCTTAATATTCTTTAAATAGTTTCTAATTACCT 91060 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================================== ================== 40 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TCATAATTTACGACTTACCAGATAGCAAAGCTGCTAACAAACGCAGGACAAGATTACATAAAATGTTGGGTGGTTACGGAAAATGGACTCAATATAGTGTGTTTGAATGTTTTTTGACTGCGGTGCAGTTTGCGACACTGCAAACCAAGATAGAACGATTGATTAAATCTGAAGAGGATTCGATTAGAATTTATGTACTAGATGCTGGGAGTGTGAAAAAAACTATCACTTATGGTTCGGAAACCCCTAGACAAGAGCAAGCGATAATCATATAATTGATATATCAGCTTGAATTTTTGGCAGACCTAGAGCGGGGGCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATAGTTCCAGCGTTTCATCAGTTTCAGTTGGCGGTTAACCCGAAGCCTGAAATGAGGTTTTTTCAGAGGTCCGCCAAATTCCCCCCTACAGTCTGCTCCCAGACTATGTTTCAGAGGGCGGGGTTTCTAATTACCT # Right flank : CATATAAAACACAGGAGGCGATCGCACGGAAAAAATAGCTACAACTTGGGCAACAATATTAGCAAGAAGCGAAATGAGAGAATCATTACAAATCATAGCTCAAGATTTAGAAATACCATACACCACAGTTAAAACTTATGTTAAATTAGCACCACGGGCGCTGAAAGATAACCAGAGCAATATTTAAACATGATTATGTATTTGGTGAAATTAGCGATCGCTTTTTCCAATATGTGAATTATATTAAATTAGCGATCGCCAAAAAAGATTAAATATTAAATATTAAATATTAAATATTAAATATTAAATATTAAATTTAATCTTGTTTATTTTGAGGAGTAAATTAATAGTGAAAGCAAAAATCAGAGATACAGAAATCTATTTTGATATTGACGGTTGTGGGTTAGCAGTTGAAGAACAGGGAATACGTAAAAAACCAGTTGCTTTCATCATTCATGGCGGACCTGGAGTAGACCACACGAGTTATAAACCTTGTTTTT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39164-42664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUZ010000012.1 Sphaerospermopsis sp. LEGE 00249 NODE_24_length_90623_cov_31.0493, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 39164 36 100.0 39 .................................... GGTTGCTCCACCCAGTTAGTTAGTTCTTTTATATGCCTG 39239 36 100.0 38 .................................... CAATTGCCACTCTCTCCGCACTTGAACTCGACCTTGAC 39313 36 100.0 35 .................................... CAGAACGCCCTCTCCTTCTCTTCCTGCTCCTTCCG 39384 36 100.0 38 .................................... AAGACATTCATCTTCTCACCTTCCTTGGTGATAAGAGT 39458 36 100.0 41 .................................... AAACGATACGATCCTATTATGCTGTTCCCACCCCTCCCCCT 39535 36 100.0 39 .................................... TAATTGCACTCCGCCTTCCTCAGTACCTTGCTAACAAAA 39610 36 100.0 33 .................................... GATATTCTCTAGCTAAAGCTTTAGGTATGTGTT 39679 36 100.0 37 .................................... ATCAATGCGCGGATCTTCCCATGCAATAAGCAACTAA 39752 36 100.0 38 .................................... TAGAGAAAATATTTAAAATTTACTATTTGAAGGCTGTT 39826 36 100.0 41 .................................... GGTGGGGTATGAAGAGGAGGAGAGAGGAAAAACAGACCGAG 39903 36 100.0 37 .................................... ATCAACAGGTCTGGGTATAGAAGGCGCTTCACCACTT 39976 36 100.0 37 .................................... TTTACACTGGTCAAAGAGAGACTATCTCCAATTACCT 40049 36 100.0 38 .................................... TTGTGCAGTGCCACAGTCGGCAACCCAAGATTTGACAA 40123 36 100.0 40 .................................... ATTTAGCACGATAGATAGTGCTATGAGGGGTTTCAGTGAT 40199 36 100.0 38 .................................... AAGTCCCTACCTAGCTTTAATGCCGTAACTGTATTGAC 40273 36 100.0 43 .................................... AAAGAGCCTATTTCAGATATATCCTCTATTGCTGTTTCAGCAA 40352 36 100.0 35 .................................... ATCCTGCCGGGGGGTCATAGGATAATAGAGGTAGC 40423 36 100.0 39 .................................... CTTTCAATAATGGCTGAAAGGAGTTTGGGGTGTCCAAAC 40498 36 100.0 36 .................................... ACCCCTTGGAAAACAGTTATACGAGTTAAGAAGACA 40570 36 100.0 41 .................................... TGGGGCGAGAAACCCTATTCTTCTGGCTTGCATCCATTTAA 40647 36 100.0 38 .................................... AAAATTCACAAAATAGACTAAATACCCCTAAACAGCTA 40721 36 100.0 37 .................................... TACTCAAACCATAATTGACGAGTTTACCCACCTACGC 40794 36 100.0 36 .................................... TATACCCAAAAAACAATACAGGTGCTATAAAATGAA 40866 36 100.0 41 .................................... CTAAATTTAAATCGGTACATAACTTTCAACCCTGTTAAGAA 40943 36 100.0 39 .................................... ATGATTTAAACAATCAAAGGACGTTACTAACACAAAAAT 41018 36 100.0 36 .................................... TTTAAGGTGCAGACAACCATCTTATTTAAAATATTT 41090 36 100.0 40 .................................... TAGAAAACATCCTTTGGTTGCGATTTTGCTACCTGTAATG 41166 36 100.0 37 .................................... AGGCTATTGCTGTATCTTTGCCCTCAAATGTTTTTAA 41239 36 100.0 31 .................................... TTTATTTGATGGGGGTGGCGTTGATGGTGAT 41306 36 100.0 33 .................................... TCAACATTTGTAGGACGTTCCGCTTGTGAGAAG 41375 36 100.0 38 .................................... TCATTATGACATTCAGGGTACAAGGACACCCAATTCTC 41449 36 100.0 45 .................................... TACAAAAGAGTTCTTTTATGAACAGGAAGCGCGTGCTTTATTGAA 41530 36 100.0 38 .................................... AACCACAGCTCTGGCACGACTGGAGTTCTCCCCTGCAA 41604 36 100.0 39 .................................... AACGTAGGGTTCGGTTTATACGAGTACCTCCTAATAAGG 41679 36 100.0 35 .................................... ACGTAGACCCTTCTCATGTGAGGGAACGCCAGATA 41750 36 100.0 36 .................................... CTCAAGTAGCTTTAGTTCCTCATCTTTCTTTTTAGC 41822 36 100.0 39 .................................... AGGTTCAATATCATTAGATAATTGAATATTTTTAGCGTA 41897 36 100.0 35 .................................... TTAATGATTTACGATAAGTCTCATAAGCCTCATTT 41968 36 100.0 34 .................................... CAAAATATATAGGAACAAACGTGGTCTCCCAAAT 42038 36 100.0 38 .................................... ATTTAACAACCGCCATTTTCGTATCAGCGTTCTCCCCT 42112 36 100.0 38 .................................... ATTAGTAGATCTAAACCTACTGGTATAAGCTCAAAGTA 42186 36 100.0 35 .................................... ACCAGGGGTGTGAGTTCCCCCGTGCGGACTGTTAA 42257 36 100.0 39 .................................... ATCCGTCTATCAAATGCAGAACCGCCGCAAAGACGACGG 42332 36 100.0 31 .................................... TTTGCTCATCCTCCTCTTTAGCTTTTTTCAA 42399 36 100.0 38 .................................... CGTATCAGATCGCGTTGTCGTCTCGTGACAGGCCGCTC 42473 36 100.0 41 .................................... TTATCTCCTTGATTAATATTCAAACCATCAACAAACCACAG 42550 36 100.0 43 .................................... TACTTTCTTCTCCTCTTTTTGGCAGTAATGATTAGCCGGGCGA 42629 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 48 36 100.0 38 ACCGCTTCCTTAACAAGAAGTGGAATTAATGGAAAC # Left flank : CTGCTATCATATTTTTGATGTGAGTTGGTTGTAAAAAAACCACAATTTTATCAGATGCTGTAGCATTTATAAAACTAGCCAAGGTAACTAATAATGTATTGACAATAACTGCTGCTAATCCTAATGGGGCAATTAATAGGATTATGAGTGTAATTGACCCATTAAATATAGCGACTCCTAAATTTCTGACTAAAGCCGCACGATGAGAAATGTACATATTTTTTGTGAGTTGATGACTTTTTTAAAATAGACCTAATTGCCAGGTAATGTAAGGGGGTTTCATGCGAATAAGGAATTTTTTTGTTAGTAATGGTTTTTTTGCGGCCGGGTAGGGGAGGGGGTGCAAATGTTGATTCTTTCGTTGACCCTGCCGATCCCTTGCTGGGTAAGGGTTTCAGGTGTTTTAACATCATGGTTTATGGTGCTGGTTGACTTTTTTTTTAGACCCGGCCGAAAATTGCCTCTAGACAGTAGGCAGGGTAAGGGTTTATAATGGTGGC # Right flank : CCCACTATCAGATCCCGGACTTCTTTGAGAAGTCCGGGATCTACTGCTTAAATGAAGATTTTCCTCATTCGCATGAGAAGCATTGAATCACGAGAAAATTGCGAGTATGTTGTTACAGGAGATGTAAACAAAACTACCGCCAGGGTGAAGGAATATCTGTTATGGGAGAAAATAATGACAATAAAAAACTGTTGCGTCAATCTTTAGATGCAATTAATGAACAAGAAGAACGGAAAAAAGCAGATAAAATTGTGCGGCTTTCTCGTTTAAATATAACCATTGCAGTTTTATTATCTTTATTGATTCCCCTTGCTGGATATTGTTACACACGACGTTGGAAAGCACTGTTGTGGCTGGGTTTGAGTCTTGGTGTAACAGGTGCAATAATTGGATTATCTTCCTCTACAGAAGAAGAAGCAATGGAAAGAGGTTTTGCTATTGGTTCTATTGCTAGTTTAATTGCGCCTATTGATAATAGTTTAGCTATTTCCCGTGCTAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGCTTCCTTAACAAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //