Array 1 38845-39160 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAK01000009.1 Megasphaera elsdenii strain J1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 38845 23 100.0 48 ....................... CCGTATTCGTCGGCATAATATTCTTGATATACGTCGGATAAGAACCAT 38916 23 100.0 50 ....................... GGAGATACACCTTCGTAAAGGTCGTTAAATTCGTCCATGATAAGAACCAT 38989 23 100.0 50 ....................... AGGTGGTCTTCCCATTCGTTCCACGGCGTAAATTTACCGATAAGAACCAT 39062 23 100.0 52 ....................... CTTTGATTTTTTCTTTATCTCTAATAGGCTGTGTAGTTAAGATAAGAACCAT 39137 23 95.7 0 ......................A | T [39157] ========== ====== ====== ====== ======================= ==================================================== ================== 5 23 99.1 50 AATCCCCGTAAGGGGACGGAAAC # Left flank : TGTTGACGAAATGCCTCAGGGAACTGGAGCAGGACAAGTTCATCATAAGGAAGCAGTATAGTACGATACCGCCAACGGTTGAGTATTCACTGGCAGAACGGGGAAAGACATTGATCCCGGCACTGGAGTCGGTATATCAATGGGCTGATGATCAAATGAAGAAAGAAAACAAAATTCAAACATCTGACAGTCTCTCATAAACAACACAGCCCATGCTTGTCTAATAGCAGATCTTTACGAATCATGAACTACGGTTTTTGATGGACTTGTGATACAATATAAGTTAGTTAGGTAATACCGTATTTATGCGCCCAACTTGCTTTTTGAAAACATAAAAAGAATCATTCCGCCCCGCTGGCTTAAAAATCAGCGATAGGACGATTTTTGAAAATCATTTTCCGCAAAAATGTGAAAAATGAGGAGAAAAGAAAATCCGCCCCGCAAAAGGCATTTTCGATGGCGCTATGAAGCCATTTATAAGGGGTGCGGATAAGAACCAT # Right flank : AAAAGCAGTCTAATTTTCGTGTTTTCCTTTTTTGTGGAAAACTTTGATGAAGTGTCGCCGCACACTCGTGACTTTAGTCATGAGTTAGGCGGCACATAACATATGTCATTGTAAAATCACAAATAAAACCTTGAAATAATTTAGCTTTCATCCTGCATATGCTATTATATATGCAGGAGATGAGAATATGACAATAGAAACCCATCATGGTCGAGGATATGTCTATTGTTTACACTACCATATCGTTTGGTGTGTGAAGTACAGACATAAGGTACTGACACCAGAAATTGTCGAAGACCTTGTTCAGATACTAGAAAAAATAGCCAATGACAATGACTTCGAAATTTTGGAACTCAACATAGACAAAGACCATGTACATATTCTCATAGACTGTTCCCCGCAACACTTCATCCCAGATATAATGAAAGCTATTAAAGGCGTGTCTGCTCGACTGCTTATGAAAAAGCACGGTGATACGCTCAGAAAGAAGCTCTGGGGGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.26, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34458-34307 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAK01000007.1 Megasphaera elsdenii strain J1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34457 29 100.0 32 ............................. TTACTTGTTGGCTTATCACGATGCAAGGTTAT 34396 29 100.0 32 ............................. TCACAGCGAATAGCCCCAATTTCTAAAATACG 34335 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GGGATCACCCCCGCTCGTGCGGGAAAGAC # Left flank : TAGGTTACACCACACTTTACATGAACAAATTCCATTTTGTAAATATATCATGATTATAACACACAGCATCATTAGCGAAAAGTCTACGCTGGAAACAGGAAATTCCCTTTTGCGACAAGACATAAAATTGCAAAAAAAAAGTACCTACATCAGGTAAGCACCTTATACCGAATGCCAAATAATAGAATCGACATCCTCTTCCTTCCCGCTCGTGCGGGAAAAACGCTTTAGTGTTGAAGATGGAGAATATACCCAATTTAGAGTTTATGATATATCAAATGAAAAAGAACCAGTTATTGACCGTACCTCCCAAAAGAGCGCTTCAATAGAAACGGGATATCTTGGGCCAAAGACATCAATAACTGATTCTAATTTAAGTATACGTGACTTCCTGCAAAATGTAAACGATAACCTGGGTAAACCCTATATCAATTCCGATGGCACTCCCAATTATGGTATCTATTTTGGAGATAACAAAACTGGCGGTGTCATGTACATCG # Right flank : AGTAATGGATCCCTTTATTTGCGCCATTTCGCTTTTGCCGGTATTCAAAATTTATTTAATTTCTTTTCAAAGTATCAGTACTTTACAACTTTTACGCAATCTTGGTGGCTGCTAAAGTTAGCATACACAAGGACTATATCTATTCTATCATCAAATCGGTTTTGTGAAAACTATGTGTCCTATTCTATTGTTTATTCTAGCTCCGTACTACCAATAAACCTCTCCGGCCCTGCGGGCCACCTCTCCTATGAGGAGAGGCATTTACAAGACGTCGACCAAGAGCTGCAGAATCAGGTTGGCTTCGTGGCCGGCACAGATGGCGACTCTTGGGGCCATGAGGCCGCGGCCGGGCTTGGCGTTCCGCGTCTGGTCGCCGCAGATGTAGAAATGACTAGTGATTTGCTTCGTTTCGATGGCGTTGCTGTCGCCGTAGCCGGCCATGCCGGAAGCGGAGACGATGTATTTATCGGGACATTGTTCCAAGACGGTGTGGACGAGCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGATCACCCCCGCTCGTGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //