Array 1 174-3683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTZ010000008.1 Campylobacter concisus isolate 2009-86120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 174 30 100.0 37 .............................. CGTAGTGCGGCATGAGCACCACTTTAAGCCCCGGATA 241 30 100.0 36 .............................. ACAAAAGAAAAAGAGCGCATATACTCCCTTTGACTA 307 30 100.0 35 .............................. AAACTTATAAAATTTGAATTGTGAGAGTTAAAACA 372 30 100.0 35 .............................. AAAACGATGATAGCGCATTTTTTGGCATATTAAAT 437 30 100.0 42 .............................. TCAACAATGAGAAGAAATTAGAGTTGGCCGTTGAAAGCTCCG 509 30 100.0 35 .............................. GACGGCGTAGGAGCAGTATCTAAAATAAAATTCTC 574 30 100.0 36 .............................. CGAGAATAAGGAGTTGTTAAATGAGTAGCCCTGAAA 640 30 100.0 35 .............................. TTGATCACCGTATCAGCCTCACGCCCTAGCACAGT 705 30 100.0 36 .............................. CAACGGTAGCGTAACTGGCGTAAGAGTTGGCAAACA 771 30 100.0 33 .............................. GATAAAAATGTTTTCTTTGGCACAAATAAAAAA 834 30 100.0 35 .............................. GCAAAGTAGCCGACCTTAACGCTGTCTTGATCGAC 899 30 100.0 35 .............................. ATTTTTAACATCTTTCAGTCGGCGGTGGCGAGCAA 964 30 100.0 34 .............................. CATCCCCTATGAAAACAAGGACATCTCCTACTTT 1028 30 100.0 34 .............................. ACGCAATGAACGTAGCTGAGGCGATGTATCAAAA 1092 30 100.0 35 .............................. ATGATGATATGGTAACACCGCACGGCTTTAGGGCT 1157 30 100.0 36 .............................. ATTCACTTATCTCTCCAGCTCTTTGTAAGGCTTCTC 1223 30 100.0 36 .............................. GCGGTATTTTTGGAGCATAAGAAAAAGCGTGATATT 1289 30 100.0 33 .............................. GAGGCAGAGGATGAGAGGCTAAAAGATATTTCT 1352 30 100.0 35 .............................. AATGGTGGTTTTGAACTTAATGCTATCAGCAAAGA 1417 30 100.0 38 .............................. AATGTGTGATAGTGTCCAACTATCGGCGTCATCGCCTC 1485 30 100.0 34 .............................. AGGATCTTGAAGCACAAATCACAAGCAAAATAAA 1549 30 100.0 38 .............................. CAAATCTTGTATTCACATCATTGTAAGCCTCGCACCAG 1617 30 100.0 33 .............................. ATCAAAGATGAAAATATGAAAAGTTGGTTTGAA 1680 30 100.0 37 .............................. CACCTTCAAAACGTGTAAAACGCATAAAATTATTTAC 1747 30 100.0 37 .............................. AGCCAAATAGTAGGTGGTGGCGTAGAGGAGCGATCTA 1814 30 100.0 36 .............................. TAACCTAAACGCTAATAATCGCAACCAAATAGCCAA 1880 30 100.0 34 .............................. CCGCAAAATGTAAGCTTTGTGACGGCTGGAGTGG 1944 30 100.0 37 .............................. AGAAAGCAAGCACGCAGTATAAGCACGTCAGTATCTC 2011 30 100.0 36 .............................. GAGCTAACGTTGATGATTTTGTTTAGGTCTGCATTT 2077 30 100.0 34 .............................. GCAGTAGTTTTTTGTTTATGCCGCTAAGAACTAA 2141 30 100.0 34 .............................. AGCTATACAACTACCTACAAACAAACGCTTAAAA 2205 30 100.0 36 .............................. TCCCAGTCGTAATGCAAAGCGATGACGACCCAAGAT 2271 30 100.0 37 .............................. TATGTATCTGCAAGGCGTGCCACTGCAAAGAGTGAGC 2338 30 96.7 35 ....A......................... TAGCGATGATAAGAATTAATAATTTTCTCATTTGT 2403 30 96.7 36 ....A......................... TAAAGCAAGGCTAACCTCCTTTTCGTCCTTGTGCTT 2469 30 96.7 37 ....A......................... TCAAAGCTCATACGAGGTGGCAGCCGCCCACATATCG 2536 30 100.0 37 .............................. AAAAAGACCGACAAGATAGATGCCTACACCAAACGCG 2603 30 100.0 37 .............................. AATTCATCATCTTTCAATGAAGCTCTAACGGCATTTA 2670 30 100.0 35 .............................. TAAAGGCATGAGTGAGTGTGGCTTTGCAAGATCAC 2735 30 100.0 36 .............................. TTCGGTTGGGCTCTAGGCTTGGGTATTTGAAAAAAT 2801 30 100.0 35 .............................. TAAAGGCATGAGTGAGTGTGGCTTTGCAAGATCAC 2866 30 96.7 38 ............................G. GGGCGACTATTGGTAGCGGCAAAATAAGCTATCAAACA 2934 30 96.7 34 ...............A.............. TACCAGCGTGCTATTTCTTGCCTTGTTGCACCAT 2998 30 100.0 36 .............................. TGGCAAGGATTGCAGATAGATTTTCTGCCAAATTGG 3064 30 100.0 35 .............................. TTCATCTTTTTTAGTTTTTCATACTGACGGTGTTG 3129 30 100.0 34 .............................. CAAACTACAAGGGTATGAAAAAAATCAAGAAAAA 3193 30 100.0 36 .............................. GATCTCTAAAATCAAAGTCGTTTGCACTAGTGGCCA 3259 30 100.0 35 .............................. CCGGTAAAAATCAAGCAGGTCATAAGGCTGCATTT 3324 30 100.0 34 .............................. CAATTAGAGCAAGAGCTGGGGTTTGCACCCTGCC 3388 30 96.7 38 ......T....................... ATATGTCTTGCTCGTGAGCCTTAGCCCAAGCCCATCTC 3456 30 100.0 34 .............................. ATGCAACATTTGCAGCACCATCTATGATACTAAG 3520 30 100.0 37 .............................. TAAAGCACGTCGGCGATAAAGAGAAAATCGCACTTTT 3587 30 100.0 37 .............................. CCTGAAAGCGTGCAGACTGGCACATTTATGTTTTTAG 3654 30 90.0 0 ..............T..........T...T | ========== ====== ====== ====== ============================== ========================================== ================== 54 30 99.4 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : ATTGTCTATTTTTTCCAAAATTTTGAGTTATAATCCATTTTATCAACAAATAAGGAGCAAGAATGGTTATTATAAATTCACGCCTTCCAACTCAAAATTTAAAAATAGAAAAGTCTTTATCTAGGCTCATACAAGGCTATATTTATAGCTATTTGCCAAAGGCTGAACATGACA # Right flank : TCTTAAAAAAAGATATCCTTAAGCAAAAAGCTTAAAATTAAACTTTAAATTTAGTTTGACATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGATTTGAAACTACGTCTTTGCGATCAATTATATAAGGTATGATGGCTGCGTGACGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTTAAAAGTGAAGTATCCTTGTAATCTATAAAATCAATTTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTTTCTTCATAATACTCTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //