Array 1 35007-36098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBO010000001.1 Lactiplantibacillus pentosus strain 14.8.42 assembly_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35007 36 100.0 30 .................................... GCTGACGACGGCCGTTATCAAGCTAATGTG 35073 36 100.0 30 .................................... TTTTATCATGTCAACCGAGTATATCAATGA 35139 36 100.0 30 .................................... TAATCCCGACCAAATTAACAAGGGAAATAA 35205 36 100.0 30 .................................... CGCTAGTCAATCCGCCTTCACGTACCAAGA 35271 36 100.0 30 .................................... GCGATACTGGTCAAACCGTGCTACAAGTGT 35337 36 100.0 30 .................................... GCCAATCAGCTCGATTTCGACTGCAACCAA 35403 36 100.0 30 .................................... AGCATAAATCCCCACACCGGCTGCAATAGC 35469 36 100.0 30 .................................... CATGATGGTGTAATAAAGAAAGATCCTACT 35535 36 100.0 30 .................................... CAAGGATTGGGCTGATCTCGCGCATTGGTT 35601 36 100.0 30 .................................... ATTAAAAAACGTTCCATCGTTTGATGCTAT 35667 36 100.0 30 .................................... CCGCGCTAAACGTTGTCTTAGTGACTGTTT 35733 36 100.0 30 .................................... AAACGTAACGTCAGAGCTTACGGCAATCAC 35799 36 100.0 30 .................................... TTTTAACGCCATCTATGGGTACAAAGGTCC 35865 36 100.0 30 .................................... TATCATTTTGCACGATGTCGGTGCTGAAAG 35931 36 100.0 30 .................................... GGACTGTTATGAAATACAGTGATAAGCAAA 35997 36 100.0 30 .................................... GAGGTGATGGAGGGGTCAAGGGGGTCTGGG 36063 36 97.2 0 ..........................A......... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCATGGATTTAACGCACAACCCTAGTGCAGTTTTAGAGGCACTTGTTCAAACTCATGTTGAGTTAGGACTCAAGCAATGCCCTGTGATGACCAATGTTAGCCACTATTTGAACTCGCAACAATGGGCCGCTTTTGAACAGCAAGTGGCGGATTTAGGCACCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGGATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : CAGAATCGTTTCGACCTGTCATCCGGGTCGCCGACAGTGGTAATTTTAAGTAGTTGTAGAATAACCCCCGTGTTACTGTACATCTTGAATAGTAGTCACTACCCCTTAACCTCCAAGCCCACCAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTTGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 593-1108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBO010000090.1 Lactiplantibacillus pentosus strain 14.8.42 assembly_contig_90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 593 28 100.0 33 ............................ CTGTAATCCCGACAGGTTTACCGCCAGAATACA 654 28 100.0 33 ............................ TACCACCGACATTGGTTGACTCCTTAATAATGT 715 28 100.0 33 ............................ CACGTAGTCATAGAGTATCTCGCCCGACGAATA 776 28 100.0 33 ............................ TTTTAATCTATTAGCTGCATATAGAAACTAGCA 837 28 100.0 33 ............................ TCAGATTGCGGCCGACGCTGGTCTGATGGTGCA 898 28 96.4 33 ..........T................. TATATGGGTCGACACTTGTCCTAATTCGCATGA 959 28 96.4 33 ..........T................. CAACGGTATCACATACGTTAAAGATACGCCATT 1020 28 96.4 33 ..........T................. CAATTGGGATAAAAACGCTGATACGATTTTAAA 1081 28 92.9 0 .................A...A...... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : CGTCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGGATTTTTGGCGAAATTGCCACTGTTTGATGGAAACAACTCAGAATAATATAACTAGTAGTAGTGAACCACGCCGCAGAAAGGGATTTAACGGATGATTTTATAGCCATTCTTCGCTTTATCAGTATTATATGACCATTTAGACCGGTTAATTGTAAATTCGTTTATACGGCAATTTTGAGCCGAATTCAAGCGATTCGCGAAATCTTGAGGAGCAATCATCTTTCAAGGGCGACAGCAAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAACAAAGCCTAAAGTAAGAAAAAGTAACACGCAAATCACTCCAAATTTCTTACGCATTGAAATATTTAGTAAGCGGCTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAACGCATCAAAAAATCACATCGCAATGGAAAATGCAGATGTGGTCTTTCTGATTGTTCGATAGTTTTTTGCTGTTGAATCCGCTTATCATTAATACGATGCTCTGTTGAGGCGTAAAAGTAATACATCTTCAGTCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGCATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTGAAATTATAATGCGTATAAAATTCCAAGGCGTCTGGCAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATACTCGCTCCAATATACTTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 158426-158124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBO010000003.1 Lactiplantibacillus pentosus strain 14.8.42 assembly_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 158425 36 97.2 30 .......................G............ AATGTTTTAGCATCCATTCATTCCCCACCT 158359 36 97.2 30 .......................G............ CATTGCCTGGTAAAGAGGGCCGTGGTTTTA 158293 36 100.0 30 .................................... AGAATCATTTGGTTATGTCAGTGTGATTGT 158227 36 100.0 30 .................................... CAAGATGAATTAGAACAGGACCGACTGGCG 158161 36 80.6 0 ................GG.........AC....GTT | AC [158135] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.0 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGAACCATTGAAGTTAATCAATATTTGACTAAGTTGGAACGACTGATTAGTGAGTCGTTAGCCGATGAAGATCGTAATCAGATTCATGATAGTTTGAGTAACTTATATTCAACTGTTCAACAACAACTTTTCTTAACGGACCTGCCACTGGAGGTAACTTACGATTTCGATATGAAGCACTTATTGAAATTTGCAAAAATTCATTTCGATGAGAAGTGGCAGACTAATCCTTATGATATAATTGAGTCAGTCCTAAAGGTTCATCAAGAGTGCGGTATTGAATCATGCGTGGTGTTGACCAACGTTGCGCACTATTTGACCGTCTCAGAAATGCAAGAACTTAAAAATAGCGTGCCAATGACCGGACAATCATTGTTACTGCTGGAGTTCTGCGTGATGAATCAACGTGATTATTATGATGTCGGGACATTTAATTATATTGATGAGGACTTTGTTGATTGGTACTGATGAAATGTTAGATTTCGATTAGAAATTAACG # Right flank : AGTCTGCCACGTATGTTGTTACCATCGTTTAAAATATCATTATAGGTCGTTAACTATGTGAGGATTCTGATTTGTCGTAGTCAATTTAAAAAGAATCTGTATTTTGAGAATGAGAGCTCAGCTGTCATACTAAACATGCGAGGCGTTCACCACCGTCCACTAATCCACAATAATCTTCCGCACCCCACAAAACGCAACGTCCTGCTGGTCACCAAACTGCCGCATGACCTCGCCGTGTGTCACGCAAGCGATACAATCATATGTTTGAGCGTACTTACTCAGAGTTGTGAGCACTCGCGACTTAACTTCAGCGGCTGTCTCATAGTGCAGAGGACTGTCTGCAACTCGTTGGCCAGCATGTTGTCGATAAATCTGATAGGCCACGCTAGCTTGTTCGTCGGTGTCAGTTCGTGAACCGGTATTATCAGGTTGCCACTCGCGCAGTCCGAGCTCAACTTTTAATGGAATATCGTTAAACCGCACGATTTCTAGTGCCGTCT # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : GTTTCAGAAGGACATTAAATCAAGAAGGTCAAGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 4391-3881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBO010000035.1 Lactiplantibacillus pentosus strain 14.8.42 assembly_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 4390 29 100.0 32 ............................. TTATGGACACTGTGCTATCGCTGCCACAACAT 4329 29 100.0 32 ............................. GATGTGCCCATCTACTACTTGATAAGTTCTCG 4268 29 100.0 32 ............................. GTTCATTTTGCTCGATATTTTTCGTTGGTTTT 4207 28 86.2 35 .....A.........A..A......-... TTAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 4144 29 86.2 33 ..G........A...A............T TAACACGCCGGTAGTCCCGTTTTTGAGGGATTG 4082 29 86.2 32 ..G............AT....C....... ATGACTGCGCACTATACTGAGTCAGTGCGACT 4021 29 75.9 32 ..T.....T......A...AA.....T.G AGGGGCACTCTCGTGAGAAGTGTAGACGCTAG 3960 29 79.3 22 ..G...TT...........A...C....T CGCTGAATCGATATCCGCCATT Deletion [3910] 3909 28 75.9 0 T..........A...A......C-...TT | G [3883] ========== ====== ====== ====== ============================= =================================== ================== 9 29 87.7 31 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : ATATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAACTGGAACACCAGCGATAAACGCTTGTACGGCGTGAAATATATGGCTAGTCTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGAATGCTCCCCAAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGAGTAGCAAGCTATTGGATTGATTTGTTAAAATTCCGGATACAGGTCAAACATTCACGCCTATTAAACGTGGTTGTAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTTATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : GTACCGATTCATGACATAATCAGCATTACTATCGCCTCTAATATATACTGGGATATTTCAGCATTTATACAGAGCGATGAACAACATCACTTCATCAACAGAGCAATTTGACTTCTATGAGAACCAACGGCAAAAAATTTAAGTTCACACCACCAATCTTCCTTGTGAATCAAGCTTCCATTACACAAACAGTGCATTTCTCAGATGTGTTCTAAATTTTTAGTCTTTCTAACTTATTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTCTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATAGTTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCTTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGTATTT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //