Array 1 2248471-2244219 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063213.1 Trueperella pecoris strain 15A0121 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2248470 29 96.6 32 ............................G TACTCGATGGCCATCCTCATCCCCAAGACGGA 2248409 29 100.0 33 ............................. GACGCCGTGGACACCTTAACGCCGGACGTGCCT 2248347 29 96.6 32 ............................G CGTCTGAGGAGTACGTGCGTCAGGCGATCGCA 2248286 29 100.0 32 ............................. GAGAAAACCCCGTCACCGCAACGAAAAACGGT 2248225 29 96.6 32 ............................G GAAAGCCTCCACCGTCGAGCGCGTCCACGTCG 2248164 29 96.6 32 ............................T CATGCGCAGCGTCTTTGCCTGCGAGAAGGCCA 2248103 29 96.6 32 ............................G AAGGGGCCTTCGAAAAGCTGTATCTGCTTGTC 2248042 29 96.6 33 ............................G CGGAGCTTTGGATGAGCTGATCCAGCCCGTCCA 2247980 29 100.0 32 ............................. GGCGAAGCCACCTTCTCCGGGAATATCACCTC 2247919 29 96.6 32 ............................T ACACCCCCATTTTTCAGGCGGACTTGCTCGAC 2247858 29 96.6 31 ............................G GAACCCCACGGGATGCTCCTTTGCTGCGTGT 2247798 29 100.0 33 ............................. GAATGAGTGGCATCGACGCTATTACGGCGCAAG 2247736 29 96.6 32 ............................G GCCTGGTACGGTCGCTTTGGCTTCGGCCATGA 2247675 29 100.0 32 ............................. GCAGCATCCGTCGAAAACATTCTGGAGGTGAC 2247614 29 96.6 32 ............................G TGTATGAGCCGCGCATCTGCCTTTACATCTTT 2247553 29 100.0 32 ............................. GCCGCATCCGTCGAAAACATTTTGGAGGTGAC 2247492 29 100.0 32 ............................. CCGTCGCTGGGGTATTTGATCCCGGAGAGGAA 2247431 29 100.0 32 ............................. ACGATGACCTGCACGGGCGTGATCGAAGTTGC 2247370 29 96.6 32 ............................G TCGATCGCGCAGCTAGCCGATGAGGTCCTAGC 2247309 29 100.0 32 ............................. TAAAGGAGAAACGGTGGGTGTGGAAGTTTCTG 2247248 29 96.6 32 ............................G ATTCTTCATGATCTTCGGATAATTATTCAGCG 2247187 29 96.6 33 ............................T GTGGTCATGGTGGGTCCTATACGAGCGTTGTGA 2247125 29 96.6 32 ............................T GATCTCATGGCCCAGATCGCTTCGCTTGAATC 2247064 29 100.0 32 ............................. GATTCAGCTGAAGATTCACAATTCTGGTGGGG 2247003 29 100.0 32 ............................. GCCCACAAATGGTGTGGCACCGCCCTCAGCCC 2246942 29 96.6 33 ............................T GTTTCCCCACGCCCGCTACTGGTTTCTTCTGTG 2246880 29 100.0 32 ............................. GTCGCCTTCGGCTTTGAGCGCGATGGCGAGGC 2246819 29 96.6 32 ............................G TATCAAGATACCCGCCCTAGCCCGACGGACTG 2246758 29 100.0 32 ............................. GGTCTGAAGTTCATTTTGAATAATGCAACTGG 2246697 29 96.6 33 ............................A CCCTCCTCGTTGAACACCGTTCAGGAGGTATGT 2246635 29 100.0 32 ............................. CTGCCTACCCACAACAAACCTCCGTCTTAGCC 2246574 29 100.0 33 ............................. GCTCCGCTTCTGGGAAGAACACGGTCACGTATA 2246512 29 100.0 33 ............................. CGCATGAGCCCGACCGGTTTCTCTGTTTGGTGA 2246450 29 100.0 32 ............................. CGCCGACGGCTTTGCTCGCACGGCCGCCATAT 2246389 29 96.6 32 ............................G GCTTGATGAGAAGCTGGGCACCTTCCGGATTC 2246328 29 96.6 34 ............................A CCGAAAACCAATTCCTGCCAAGCTTATCGCCTCC 2246265 29 100.0 33 ............................. CCGGCACAGTCATCGTCGCTCGATATGACGAAC 2246203 29 100.0 32 ............................. TACCCCCGCTAAACCCCAACATGTAGTGCCCG 2246142 29 100.0 33 ............................. CCGTCAGGATCCCCCAACGCCTCATGCGCAATA 2246080 29 96.6 32 ............................G TGGGCGCGCTGGTCTTTGTTGTCGCCGGTGAA 2246019 29 96.6 32 ............................G CAGGCCGAGCTAGACGCCCCAATGGCGATGGC 2245958 29 100.0 32 ............................. CAATGAAAACCACGATCCGTATCATTGCCGGC 2245897 29 100.0 32 ............................. CTTGATCCCGTCACCCGAATAGGACAGCGTGA 2245836 29 100.0 33 ............................. AGCTCAAGCGCGCCAATATCTTTTGACAAGTCG 2245774 29 96.6 32 ............................G AGGCAGCTAAGGCGAGGCGTGAGAATGCTGGC 2245713 29 100.0 32 ............................. CTCAGACCTATGGATCACCCGCGCCCAAGCCT 2245652 29 96.6 32 ............T................ GTCAGCGCGGCCACGATCGCGTTAAAGACGGC 2245591 29 96.6 32 ............T................ CATGGGAGCGTGGTGGTTGGGTCGGGGAGTGT 2245530 29 96.6 32 ............T................ GTCTGCTGCAGGAGAAAGTTCGCGATTATACA 2245469 29 96.6 32 ............T................ GGCGTCGTGATCGTCTTGCGAATCTTGCCAGT 2245408 29 93.1 32 ............T...............G TTCTCCCCAGATGGTGCACACGTCGGCCTCGC 2245347 29 93.1 32 ............T...............A CATCCGACCTCTGGATCACCCGCGCCCAAGCC 2245286 29 93.1 32 ............T...............G CGCTCCAAGCCACGGTAGGCGTGGCCAAGCCG 2245225 29 96.6 32 ............T................ GCGCTTAAAGACGCCTTCACCACCCGCAAAAC 2245164 29 93.1 32 ............T...............T CGACGCTGACCATGTATCCCCAGCCGGAGGGC 2245103 29 96.6 32 ............T................ ACTCGATTTTGACCATGACAAGATTATTTTCA 2245042 29 96.6 32 ............T................ TTATCATTCGCAATGAGAAGGTCAGGGGTTCG 2244981 29 93.1 33 ............T...............A CATAGCCGCCACCTCGACCTGCGGTGCACCATC 2244919 29 93.1 32 ............T...............T TTGAGCTGATCGGGAAGCTACAGGTCTCTAGC 2244858 29 93.1 32 ............T...............G AGGGAGCCGTCCATGATGCGGATGACGCGGAG 2244797 29 93.1 32 ............T...............T GAGAAAATCGAGCGGAAAGCTCTGGCCACGGT 2244736 29 96.6 32 ............T................ TTGTGGGCACACGAAGCGCTGCGAGCGACGAA 2244675 29 93.1 32 ............T...............G TCCAACGCTAGTCGCAGCCGCATCCGCAAGAT 2244614 29 93.1 32 ............T...............T GGGCGGGCGGGGATGCGGCGGGCGGGCCATCC 2244553 29 93.1 32 ............T...............G CGCTCGGCTGCGGTCTTGCCTAGGGTCAGCAT 2244492 29 96.6 33 ............T................ AAACTAATTTATCGGAAGGATAACGAACATGGA 2244430 29 93.1 32 ............T...............G TCTGGAAGGTCGACAACTCGTCGGGGACGCCG 2244369 29 96.6 32 ............T................ CTCCAACCAACCATCCAGCCTTCCGTTGAAGC 2244308 29 96.6 32 ............T................ ACCCGCGCGAAGGCTGATTCTTTGACGGCGGA 2244247 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================== ================== 70 29 97.2 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : ACAGCGGTGCCTGTAGGTTTGCGGGGAGACCTCACGAAGTGGCTGATGGAGATCGCGCCGGGCGTGTTCGTGGGCAATCCAAGCGCACGAATACGAGAACAGATCTGGGCTCGAACCGTCACGCTATGTAAAGATGGTCGGGCAATCATGGTCTGCTCCTCGGATAACGAGCAGGGAATGGTGTTCCGAACTCATCGCCATGATTGGGAGCCTACAGACTTCGACGGTTTGATCCTAATGATGCGACCAGAAGCTAGGGATAATTCTCCGAGCAACCAGCGAAGAACGGGGTGGTCGGCCGCGAGGCATCTGCGCAAAAAGTATCAATAACGACTCAACCGGTTATCAATTCGAATTGCTGAAAGTTCTAGATTGCATGTTGTGTGCAACAACGCTGGGTCTATTGGCTCGTACAGTTCCTGTTGGGCTTTCTCTAGGTTAGCCAAAAGAAGTTGAATGTATAATCGGAGTGCTGTCGGCAGAAATGCTGGTCAGCAAGG # Right flank : AAACTGTGATGCCGTGTGTCAGCGACGGTCGAAAAGTAGCCCACCTGTCTTCAAGAAATGGGTGATGTTTGATCAAGGTTGGGGCGAGATCCGGGGCAACGACCTTGACAATCCCTTCTGATCCGTAGCCAGACGATAGGGGAGACCTTCAACCCTCCCGGCACACACCCTCCCGGCACACACCCTCCCGGCACACACCCTCCCGGCACACACCTTCCCGGCTCGCGCCCATCCGGCGTAGGCTTTATCCCATGAGCAACGTCACCGTATCCATTCATCCGTTCTGGAACTTCGACATCGACATCCCCGGCGCTACCGTGGTGCGCTGGGACTTCGAGTCCGAGCCGCCAGTCGAACATGCCGACATCGTGGTGACCAGCCACTGGGCCACTCCCAACGGTGTGGAAATGGCGCAGAAGGTTGGTGCTTCCCTTCTTCAGATTGGCTCCATCGGGTTTGACATGATCGACCCCGATCTGCCCACAGGCCTCCAGGTTGCC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGTAGGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //