Array 1 43769-44094 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLO01000024.1 Streptomyces albidoflavus strain DSM 40455 Scaffold22_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43769 28 100.0 33 ............................ GGACGACAAGACTCCCGAGGAGGCCCGCGGTGA 43830 27 96.4 33 ......................-..... GGTCGACGGGGAGATCCCGTATGTGGTGCGCAC 43890 28 100.0 33 ............................ GGGGCCGCCGCCAACGCGGTAGTGGGCGAGGTC 43951 28 92.9 27 ..............A.T........... GATGAGGCCGCATCCGTGCCAGAGGCA 44006 28 82.1 33 ....C....A.......C....G.G... GGTCACCGGCCAGACCTGGGACGACGTGGAAGC 44067 28 82.1 0 .................A.A.TG....G | ========== ====== ====== ====== ============================ ================================= ================== 6 28 92.2 32 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : CCGACGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCACGGGCTACCTGCTGAAAGCCGAACGGCCCGAGGAGCTTTTCACCGCCATCAGGGCTGCGGCTTCGGGGCGTACGGCGTTGTCGCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCGGCCCGAGCTGACGCCGAGGGAGCGGGACATTTTGCGGCACTTGACGCAGGGGTTGGGCAACCGGGAGATCGCCAGGGCGTTGTTCATCAGCGAGGCTACGGTGAAGACCCATTTGGGGCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGGAAGGAGAGGCGGTTGTTGGGGTGAGGGGTGGGTGGCGGGGGTGGGTTCGTGGATTGGGGGGCGGGTGGGGTGGGTTGGGGGCGTAGGTTGGGGGGTGCGAGGGAGGGGGCGGCGATGGGTAAAGGGATGGCAAAGGCCGTCTGAAGATGCAGGTGGGGAAGG # Right flank : GCCATGGACTGGTCCAGCGTGTTGTGCCTCACCTCACCGCCCGCACCATCACCGTCAGCTGAGGCGAGGCCGGCGAAGGCTGGCTAGTACCGATGTCCTCGTACCCCCACGAGCGGTACAGGGCATGCACCTTCCCGTTTCCTGCCGAGGAGTTGACCATCAGAGTCACGTACCGGTCGTCGCTGGCGGCGAGGAGTTCGTCGTGGATGCGTCGGGCGGTGCCTGTCCCGCGCCAAGCGGGTCGTACTCCGATCTCCTTGAGGGCGAGCGTCGGCTGCGCGGTGTACTCGTCGCCAGGGGCCGGGGTGGTGCGCTGCCAATACCGGTCGCCGTGCTCGATGCGGTTGGCGTACGCGTAGCCGACCGGCTTGCCCTCGGAGTAGGCGAGCACGGCGACGAAGCCGGGTTCGCGGCCGTGCCGGTCCAGGCGCTCGCCAAAGACGAGCGTCGTGTAATTCGGGAGGTGCAGGAGCGGGGCTCGCACCTCCGCGTAGACCTCG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 198546-198698 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLO01000041.1 Streptomyces albidoflavus strain DSM 40455 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 198546 24 100.0 41 ........................ TCTTGAACGGACGAGTCCGATCCGGACCTCGGCCCACAACC 198611 24 100.0 40 ........................ TCCTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAGAT 198675 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 3 24 100.0 41 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CCAGGGCCGCAGGGCATCCAGCGCCGCCGGAGCGGGCGGCGCACCCCCGGGCCCCCGCACCAGCCACTCGTTCCACAACGCACCCCCGGGCGCCACCACCGCCTCGAACCGCAACGCGGGCCAGAGCACCACCGGCCACCGCAACGCCTCACACTCCAGATCCCCCACGACCCGCCGCTCCACGGCCTCCGGCACCCCCAGCACCGACCGCAACAACCCGGCCCCCCGCCGCCCCCTGGGTAACCGCACCATCGCCTGCCACCGCCGGTTCGCCTCCCGCATGGCGCCGGCATCCACCCCCAGCTCCCGCCGCGCCTCCTCCACCATCCCCGCCTGAAAATCAGCCATCCGCCGCAACAACACCAACTGAAACTCAAGCGACCCGAACGAACTGGTCCCACCGACAGCAGCGCACATCCCCCCATTGTCCGCAGCCCCCACCCCACCGCGAAAAACAGCGGGCACGACCACCGAGAGGCAACTGGCCGACCGCCGAAAAA # Right flank : ACCCCACCGCACCCCCGCCGGGGAGGGAAGACTCACTCCCCGGCCATCCTCCGCAACATCCCCCGGAGGACCTCCCGCTCCTCCCGGGAAAACCCGGCAAGCGGCTCCCGAGCAAAATCAAGGGAGTCCCGCAGCACCCGCGCGACCTCAAGCCCCTCCGCGGTCAGAGCGGCCACCTTGATCCGCCGGTCCCCGGGATCGGCCTGCCGCTCGACCAGCCCCCGCAGGGCGAGCCGGTCCACGATCCCGGTGACGTTCGACGGCTCGCACTTGAGCCGCCGGGCGATCTGCCGCATGGGCATCGCCTCGAGGGACAGCAGACCCAGTACACGCGCCTGCGCGCCGGTGAGTGCCTGCTCGGCGGCGGCCCGGTCGTACTCCTCGTGGTACCGCGCCACGACAGCGCCGATCAGCTCGACGACTTCGAGGGTCAAGGGGTCCGTGCGGGTGGCCATGGGTCCCAGGATAGCCGGTTGCTTGACAACATGAAATATTCAGAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 89797-89586 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLO01000009.1 Streptomyces albidoflavus strain DSM 40455 Scaffold12_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 89796 28 96.4 33 ............C............... CGACCGCGCCTGGGCGGCCGGGGCGATCCTGGT 89735 28 100.0 33 ............................ CAGGTTGAACCGGGCGGTCTCCGGAGAGACCTC 89674 28 100.0 33 ............................ CCCGGAGCAGTGCGCGAGGAGCGCGGCGGCTTC 89613 28 92.9 0 ...........A..........C..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 CTGCTCCCCGCGAGTGCGGGGGTGAGCC # Left flank : GGGGGCCACGAGCAAGGCTCAGGCTCACAGGGCCGGGCCGCTGGATGAAGCATCGGCTGTGACGGGGCCGCGCTCCGGGTTGCTTTGTGGAGGTGGCGACTCGGCTGCCACGAACTCTCTGTCCCGGCTAGCTTCTTCATGGGCGGTGCTTGGGGGCAGCTGGGGGAGGGCCCTGCTGTCAGCGGGCTTGGCCTGTCGGGTGCTCTTCTCGACTCCGCTCGACTCCGCTTCGGGGTTGGCTGGGCAGATCGCCTTTGCGGAGACGGGTCGCGCGGCCACGATCGGGACCATCCCCAGCGCCCAAGGTAGGCAGGCTCAGGCAGTGGCGCCGGGGCTTGGTGCTTCTACCGGCCGATGACCGGGATGGCTATGCATGCAGTGCTCTGCGGCGAAAGCAAGGCGGCGGGGGAGGGATGCGGGCGGCGGAGGCTAGGGTGGCGGACATGGCGAAGTTGGCGTGGAACGGCGACTTGCCGAGGTGAAGATGCAGGTCAGGGAGA # Right flank : TCCCGGGCTGCAACGCACTGGCCATGAGGAGCCCGCGCCCTTGAGCCCCGCAGAGCCATGGTCGTATCCCTGCGATGAGAAGGAGCCGCATCCTCGACCGACCTAAGCGTCCATCGGGTAGGAAGAGGCGAACTGGGCGCCACCGGAGAGGACTTCTGCAAAACGTGTCGGGGGCCTTCACTCCACAGCGCCCCTGCTCACCGACCGTATGCCCAAGGCGCACGACGTGGCCCGCCCACGAGCCCGTCAGGCTGTCCTCGGCCCCCCGCGCGCCCCAGTCAGGAGCGCCCACCCACCGCTGGCCCCGCCCCCGCCTCCCCGGCAAGCGGTCACGCAACCCCCGCAAACGCCTCTGCCACGTGCTCGCGGCAGGCAGCGCCCCCGCACCCGCACCCGGAAGCTCCCCTGCCCGGTCCTGCCAAGCCGGGAGCATGCCCCCGAGGCGAGCCCAGGCAAGGCCCACCGGCCGCCCCTCTCGCCCCGCCACAAGGAACGCGACG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGAGTGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8992-8840 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLO01000022.1 Streptomyces albidoflavus strain DSM 40455 Scaffold1_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8991 30 100.0 31 .............................. GGCGGCACTGTCGATCGGACCGAGCCCAAAT 8930 30 96.7 31 ..............T............... AGTGGAACGGCTGATCGCACCGAACCAACTC 8869 30 96.7 0 ..........................A... | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 CAGCCCGGCCGGCGCTTGAGGCCATCGGTA # Left flank : GAATGCCCGACCACCACCGGAGCCACCCCGAACCCGTCCACCGCCTCCTGCACCACCCGCGTGTCCTCCCGCAACGACCCCCGATGCAACTCCGGAACCACCACCTCCACCCCCACCCGCCGCAACCCCGCAGCCACCACCCCAAAATGCCCCGCCTGGTGATAGAGCCCATGCACCAACACGACCCCACCCATACGTCCCCCCGCCTGGTCCTGAATTCAGGACCACTCGCCCCTTGGTCGCTGCGTTCAGGGTCACTGACCCCCTAGTTCTGCGTTCAGAGTCCGGCCCTGAGTTCAGGGTCCCCCCGTCCTGGCCCTGCTTCCACAACCCGCCTGGCTGGTCCTGCACAGACGGTCCGCTCTCCCTGCTCCGATTCCAGCAACGGCCTACTCCCTCCCGAACTCACCGCCCACCTCTCTCGCTCCGGCCCCCTGCCCCCGGGCCCACGGCCCCGCCCCTGCTCAGCGGCCACCTTCCGATCCAACGGACACCAATCC # Right flank : AGCGGCACCCCCAGCCCCAGAGGCCGCCGCCAGGCAGACGCACCCACACCTGAAGCCACACCCCACCTCCCCACCGGTAGGCTCTGATCAAGCGGGCCGCAAGCCCACCTCACCGCCCCGAAGGGAACCCCCATGGCACTCGAAGCCGGCCTCCTGGAAATCCTCGCCTGCCCGGCGTGCCACGCCCCCCTTGAGGAGTCGAAGACCGACTCGACCCCGGAACTCCTGTGCACCGGCGAGGGCTGCGCCCTCGCTTACCCGATCCGCGACGGCATCCCCGTCCTCCTCGTCGACGAGGCCCGCCGCCCCGCCTGACCAGGGCGGACAGGCGTACCCGCACGCGCGGCACGCGAACCCCGCCCGGGGCGGACCAGGCGTACCCGCACCCACGGAACGCGAGCCCCCGCCTGACCAGGGCGAACCAGGCGTACCCCGCGGACGCGAGCCCCGTACGAGGCGCGACCGAGCCTCGCGGAGGTAGCCCGCCCCACCCCGGGGCA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCATCGGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 337854-337459 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLO01000022.1 Streptomyces albidoflavus strain DSM 40455 Scaffold1_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 337853 29 100.0 32 ............................. TTGAGCTCCAGGTCGAGCGACGGGAGTTCAGC 337792 29 96.6 32 ............................T CTACGAGGCGGCATACCTGGAAGCGGACAACA 337731 29 100.0 32 ............................. GTCTGGGCGGCGTGCACTCGGGCTCGGGGGCG 337670 29 93.1 32 A........................C... GACGTCGACAAGTGCTACTGGCGCCTGGTGGA 337609 29 82.8 32 ...T..T...T..A......C........ TCCTCGGTGGTCAGCTCCTCGCTGCCCGAGTC 337548 29 86.2 32 A.......T...C...........T.... TCAGGGAGTCCTTGAAGGGTCTCCAGGAGAAA 337487 29 89.7 0 ............C...T......A..... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 92.6 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CGGGGAGGGTGCCCTTGTCGACCAGGTCTTCGAGGGCGGAGAGGGTGGCTTGGTGGTGGGGGGAATTTGGCTGGGCTGCGGGGGAGGTGGGCGTGGTCGAGGGGGCGGCTGGGCTGGTGGTCGGGTGCTCGGCTGGGGTGGCGGAGGCGGGGGGCAGGGTTGCCGCGCCGGTGGCCAGGGCTATGGACAGGGTTAAGGCGAGCGTGCGGGTGGGGTGTTGGGGCATGGGGCGTCTCCTGGTCGGGGAGGGGCGGGGTGCCTCTCGGGGACCAGAACGCTTGGGGGTGGGGGGGGGGACTGGGGTTGTTGTGGCGGGGGAGGGGGCTGGGGTGGCTTTGCTGGTCTCTTGTTGGGTTGCGGTGGGGGGATTGGGGGAGGATGGGCGGGGCTCTTGATGGGGTCGAGGGGAGGGTTGTATGCGGCTTTCAGGGCAATTGCCGGAATCTGGCAAGCTTGCAGAGATGGGGTGTGGGGGCGGGTAAGGCCGCAGGTCATGGAGG # Right flank : AAGCGGTCGGCCGCGTGCCCCGCCTCGGCGTGCTCCGCTCCGAGGCGGCCCCCACCCCCTTCGAGTGATCCCCCACCCCCCAAGTGCATCCCCCCACCCCCCGGGCAGCCTCCTCCAGGGAGTTCGTCCACCCGAGAGGAAGCACCGCGTGGGACTGTCACGGAAGTACGGAACCGCTATCACCGAAGGGCCGACCCCGGCCGATGTCGCCGGGCAGGCTGCCCTGCCCTACCCCGACGGGTGGGCTGCCGTGGCCTTCTCCGAGGAGTTGACGAGAGGGAAGGTGCTCACCCGGCCGCTCGCCGGGGAGGATGTCGTGCTGTACCGGCTCGGGACCGGTGCTCTGCGGGCCGTGAAGCCCTACTGTCCCCACCTCGGCGCGCATCTGGGGCTCGGCAGGGTCGACGGGGAGGACCTGGTCTGTCCCTTCCACCTCTTCGCGTTCGGGCCCGACGGGGCCTGTGTGCGGACCGGGTACGAGACGGCGCCGCCCCGGTCGC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 460059-460330 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLO01000022.1 Streptomyces albidoflavus strain DSM 40455 Scaffold1_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 460059 27 100.0 34 ........................... CCAGTTGGCACCGCCGCACGATGATCACAACCCA 460120 27 100.0 34 ........................... CCGCCGAGGGGTTGTGGATGAGGCCGCCGCGCTG 460181 27 100.0 34 ........................... CCTTCGGGCTCGCCACCTCGACCGCGAGCACAGT 460242 27 100.0 34 ........................... CCTCGTCGAGGGTGGCGTTCAGGACCGTGACGAT 460303 27 100.0 0 ........................... | T [460328] ========== ====== ====== ====== =========================== ================================== ================== 5 27 100.0 34 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : GCGATGAGCCTGCTCCGAGCGATGGACATGCCGCTCTCACCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCGCAGGGGGACTCGGTGGCGGAGATCGCCCGGGGGTTGTGCCTGTCGCACGGGACGGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCGAGGAACCGGGTGGATGCGATTCGGATCAGCCGGGCGGCGGGGTGGGTTTGAGGGGCTGGGGTTGAGGGGGCTGGTGGGGGCTTGGGTGGTACGGGGGTGGGGTTGGGACTTGGCGGGTGGGGTGGGGGGTTGGGTCGGGTGAGGCTGAGGAGTGGGGTCGGGGTGTGAGTGGCTGGAAGGGAGGGGTTCGCGGGAGATCTGTCGGGTTCAATGGGGGGCGGGTGCTGGGTGGACACCATGTAGGGGGTATGAGGCATTCACCCGCATTGCCGGAATCTTTGAAGCTTGCGCTAGAGAGTGACTGGGCTGAGTGAAACCCCAGGTCAGCGAGA # Right flank : CCCTCCCGGCAGCCGCCGCTCCCCGCCCACGCCTAGGTCGACGCGGTGCCCCGGCTCCCCATCGCCGAAGGCTCCCCCAGCCCCGCCGCCAGTTCCCCGTACAAGGCCGACTCACGAAGGAGCGAGGCGTGGGTCCCCAGGTATGGGGTCGCCCCGTCCAAGAGCAGGACGCGTTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACTGTGATGACCGTGGCCGGGTGGGAAGCGAAGGCCAGCTCGGTCGCAGCCCGTGCCCCTGCGTCCAGGTGGGCCGTGGGCTCGTCCAGGAGGAGCAGGGGCGTAGGTGTCAGCCAAGCCCGTGCCAAAGCGATGCGGCGGCGTTCGGACGGGGTGAGGTGGTCCGGGCGGAGAGGGCGGGCGGGGTCAGCGGCGAGGGGGGCCAGGGTGAAGGTGTCGATGGCTTCCGTGATGCGAGGGGCCGGGGCGTCCGGGGTGAGGTAGGTGAGGTTGTCGTGGAGAGGGGCCTCGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 216701-216427 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLO01000038.1 Streptomyces albidoflavus strain DSM 40455 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 216700 30 100.0 31 .............................. AGGTGAAGGAGGGGGCCTCGTGGCTCGGCGA 216639 30 96.7 31 .............................T CGTCCCAGGTGATCGCCATGGGTGCGAACGG 216578 30 96.7 31 .............................G GCGTCAACATCTGCGACCTCGACCCCAACTG 216517 30 93.3 31 .........................C...G AGGCCGCTCCGGTCGTCACGAACATCATCGA 216456 30 83.3 0 ..............G......CAA.C.... | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : AAGCACCACACCCCGCAGCCCGCTACGCCACCGGCAAAGTCCGATACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCTGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGGCCATGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGGTGCGTGGGGGGGCCGGGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGAACTCACGGCGAGGTGGGCATTTTGGGGCGAATATCGCTATCGGCGAAGCTTGCAGAAACTGAGGCAGGGGCGCCGTAAACCTGCTGGTCAGGGAGA # Right flank : CCCCGCCTCACCCCGACCCGGCGCACAGCGCCGCCACCCGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCGGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGCGGGAGTGCGCGCGGGCTGGCGAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCGTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGCA # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 210138-210288 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLO01000040.1 Streptomyces albidoflavus strain DSM 40455 Scaffold8_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210138 29 100.0 32 ............................. ACCCGCCAGGAAGTCCTGCTCGCCGAGGCCAC 210199 29 100.0 32 ............................. GCGACCGCATCGCCGATCTTCTGGTGCGGAAG 210260 29 96.6 0 .................T........... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CCCGGCACCCACCCCCGCATCGTCCCCGCCCACCACAGAACCCCTCCCCGTAGCCCGGTCTGCCGCTGCGGGTCACCTTAGGGGACGGGGGGGTTGGGCGTCTTGGGGGTGAGGGGGTGGGGGTGGCGTGGGCGGCTGGTACGGGGGTGGGGCTTCGGGGGGTGTGGGCGGGGGGTGTTCGGGTGCGTTGGGGTGGGGCGCCGAGTGGTTGGGGGGAGGGGGCGTGGCGGGGTTGGAGTTGACGCGGGGTGTTGTCCTGTTCCGATCCGCAGGAGCCACTGGGCGAGCCGGGTCGGAAGTTGGGGGCTTGGTTTCACTTGGGTGCGACGTTGCTGGGGGGGCGCTCGAGAAGGCGGAGTCAGGTGGGGGGAACTGGGGGAGGATGGGCGGGGGCTGATGAATCGGGAGGGGGTGCTATGTCGCTTTCATGTGAAAGGTCGCAATCGGCGAAGCTTGCAGGAACGGGTGGCGGCGCCGGGTAAAGGTGCAGGTCATGGAGA # Right flank : CGTCGGGTCGACGTCGCTCAGCTTGATGGGGTTGTGCTCCCCGCGCCCGCGGGGCAACTCACCCGCCCTCCCTCAGCTCTGCCCACGCCCCCTCACGGCTCGCAAGCCCCACCCTTCACAGCAGCCCCCTCCGCGCCCGCGAAAAACTCCACAACCCGCCCCGCGCACCCCCCACCAGCCATCCCCCCATGTTCCCCGTCCCCCACCACCAACAACGACCCCCCAGTTCGCGCCCGCATCGCCCGGGCCCAGGGCAACGGCGTGATCACCTCGTCCCTGTGGGCGACCAGCAGCAAAGGCCCGTCCGTCCGGCCCGGTTCCACAGGCGGCCGCTCCGGAGCCGGCAAGCCCGCGCACGTGCTGGTCCCCGGGACCTCGCCGCTGCCCGGGAACATCGGGCGGGTCGCGCCCAGTACCGGGTAGGCGGTGCGGCGTTCGCCGTAGGCCGACCACTGTTCCGTGAACGAGGCGGCGTGGGTCACCTGGGAGCAGAGCAGTGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //