Array 1 63433-63053 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBFC01000018.1 Thermosipho affectus strain ik275mar contig_4A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 63432 30 100.0 36 .............................. TGGAAACAGAAGAATATATAGTAATTCTTCTATTTC 63366 30 100.0 38 .............................. TTTTATTGTTCGATATATTTCATCGTCTATTGTATTTT 63298 30 100.0 41 .............................. CCAGCTAACATTTCTATAATTTCATTATCTGTTTTTTTGTG 63227 30 100.0 41 .............................. TTAAAATTTCTTCGCTCCCATCTGGGAGCGAGATTTTTTTT 63156 30 100.0 44 .............................. GCAATATTTATAGCTTTGACATTTTCTTCTGCAAGCCATTTTTC 63082 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 6 30 100.0 40 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TTGTCTTTCAACAATAATTTTTTCATTATTTTTAATTATATTAAGTTTAATTTTCTATGATTAATCATGTATTTTATTTACGTGAAGAATATATAGTTAAATTATTATAATATTATAATTATATTATTTTATATTAAACACTGTATTTTCTTTTATTAAATAGAAAATATCATTCGTTATGAATAAAACATAAAATTATGTAATATAAAATAAAATAATATTTAATATAATTTGTTAATTATAAACAAATAAAAATAAATTAACTAATAGGTTTTCCATTTACACAAACTCATCAAAAATACCTTGTTTAATAAAATATCAATTGTAACTAATTGTAACGTTTGGGTTAAGACGAAAAATATAAGGAATATTCGATGACCTTTTCCGTTAACAAAAAAGCTTGTATATGGCTTAAAATAACGTGTTTACTTTCGAGTAACTTCCAGTTAATCAAAACGAAAATAATGTGGTTTATAATAATTTATGAGATTTTTAATTGG # Right flank : TTCATTGTGTGTGTGTGTACAAAAATCAAAGAAAATTATTAAAAAATCAAGTACAGAATAGAACAGATAATAGGAATAGTGAAAAACATATTCGGAGATAGAACTTTTTTATTTAAAACACCAAAACTGCGTGTATATGTAAGAATTATATTGTACAACTTGATAGAGTTATTCCAAATAATTTTTTATTTAATTTTGTGCAAGATACTTTGTTATTCGAATATATTTAGTTCATAGCTCTATATGCCTATTTGTTTTATATCTCTTTGTTTTTTGAACAGAATCTGAAATTAATTGACAATATCGCTTCTTTATATTAAAATAATAGAAAGAAAAAATTAACAGTTGGTGATATTATGAAAAAATTATCGACAAAAGAATATTTTACCTATTTTAAAAGTGAAAACTTTGTTTGGTGGTGGAACAGTGGCGATTGTCCACCACCTTTGTTGTGGTAAAAATATACTTGAGAGGACAATTGCCGGGCATTATCTGCCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 61542-60753 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBFC01000002.1 Thermosipho affectus strain ik275mar contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 61541 30 100.0 37 .............................. TCAAGACGCCCCAATCGTCTATTATTGGGGCGTTTAA 61474 30 100.0 39 .............................. AAGAATCTTAGTAAGACGGGGTCTCTTTCGTCGATGTGT 61405 30 100.0 38 .............................. GCGAGTTGTCGGCTGGACAACTTCTACTTTGATAATCA 61337 30 100.0 36 .............................. TCAAATCTCGTTTTCAAATACCTTATCATATTTCTG 61271 30 100.0 43 .............................. TCCATAAATATTGACGGGAGATGTTCGTCTAACCAGTTAATAA 61198 30 100.0 37 .............................. TCAAATATATCAGCAAGTGCATCCTTAACTGAAACAA 61131 30 100.0 39 .............................. CATTAACTTCATTCCACACATTACTCAACTCCAATAATT 61062 30 100.0 41 .............................. CGAAGAAATGGGGCTATATTTTTTACTGATATTTGTTTTTC 60991 30 100.0 42 .............................. AAGAATCTTTCGAATATCTTTTCGAAAGATTCTCAATTTTTT 60919 30 100.0 40 .............................. GGGTTCAAGCGGGAGCCCTACTCCCTTCCTCGGTTATTCA 60849 30 100.0 37 .............................. CGCTCCCACCGCAGCACCTCCGTTTCTTCCATGCAAA 60782 30 86.7 0 ...........G..............G.TG | ========== ====== ====== ====== ============================== =========================================== ================== 12 30 98.9 39 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TTAAAATAACATGTTTACTTTTAGGTAACTTCCAGTTAATCCAAATGAAAATATCTTGGTTTATAATAATTTATAAGGTTTTTTAATT # Right flank : TAAAATTTTTATTTGAAAAAATTTTTTATTTTGTCAGATTTTTTTGTTTAGATTCGTAATTATAAATGAAAGGAGAGTTAATTGGGAGGGAATTTTATGTATGTTATTATGATTTACGATGTTAATAGAAAAAGGGTTTCAAAAGTTTTAAGAATTGCTAGAAAATATTTACGTTGGGTACAAAGATCTGTTTTTGAGGGTAGAATAACAGAGAAAGATTTTAATGAATTGAGAATGGAAATACAGAACATAATTGTTGAAAATGAGGATAGTATATATTGGTATATTTTAAAAAAAGAGTTTGTTCCTTATAGGCACTATATTGGTGAACCCAAATCAACAATTTCCAGTATTATATAGGAGGGAGTTTATGGAAACATTATATGTTTTTACAGATGGCGAAATCAGAAAGAAAAATAATGCGATGTATTTGATTCCAAAATCTGAAGAAAAAAAACCAATGATTGTTCCATTAAAAAATGTTAGTTCTATTATGATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 299-1023 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBFC01000010.1 Thermosipho affectus strain ik275mar contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 299 30 100.0 40 .............................. CACCATTCATGTCCTGAAAAACAAATAGATGATATACCCA 369 30 100.0 43 .............................. TGAATCAATTTCATCATTTATTCTTAGTTTAAAAGGTGTTTTT 442 30 100.0 41 .............................. TCTTTTCTTGCGAAGGGGCATATTACACCTTCAATTCTTAC 513 30 100.0 39 .............................. TAAAAATTCTTCAATTGTTATACCATCAATTTCATACTC 582 30 100.0 39 .............................. TAAATTCCACGGCGTTGGTGGTGCTGCCGATATGTCTAA 651 30 100.0 42 .............................. GAGTATAGTGCCGCCTGCGTAGAAGATAATTAGCCGAACTTA 723 30 100.0 39 .............................. GGTTTACACACCCCCGCAAAATAAGATGCTCGTTATTTC 792 30 100.0 39 .............................. AAACTATGAATACTACTCCATCTTGTGGTGCTGGGTTTA 861 30 100.0 36 .............................. CAAATTGCATGCCAGAAAAATAGTACTCCTCTAATT 927 30 100.0 37 .............................. AATTCCTCAATATGATATACCTTGGGTAAATATTTAA 994 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== =========================================== ================== 11 30 99.4 40 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TTTATCTAACTTGCTAGATTTGTTCCTTTTTTTAGGCTTCCCCTGATATCCTTCCCAATATTTCTTTACTGTCCTTCTGTCTATCCCGTATATCCTGGCTAATTCAGAAAAATTCGGTCTCAAATCCATCCCCCTTAACATTTCCAAATGTTGTTTGACTTTTTCCATTTTTGGTATCCCTCCTTCCATTGGAAGGATACCATTTATGTACAATTTTGTTCATTTTTATTTTCCTCTTTTTGGCCATTTGTATTTTACCATTTACACATTCTATAGAAACAACCTCATCTCCTTTTAGG # Right flank : TCAAAGGGAAATGATAGATATCATTTCACATAATTTGAAAAGAATATACAAAAAAAACATCAAAATTCCATGATGTTTCGATTTTTTTCTAAAAAAATGCACAGAAACAAAACAGCATGACTTTGGTAGAATATCAAAGCCATGCTGTTTAAAAGTAAATCTAAAATTGCGAATTATTTTAATATATGTCTTAAAAATTCTTTTGTCCTCTGATTTTTTGGTTCTTTAAAAATTTCTTCTGGTTTTCCTTCCTCTGCTATAACTCCTTTGTCCATGAAGATTATCCTATCTGCTACTTCTCTTGCAAATCCTATTTCGTGTGTTACCACTATCATTGTCATACCAGATTTTGCAAGATCCTTCATTACCTCTAAAACTTCACCTACAAGTTCTGGATCAAGAGCAGATGTAGGCTCGTCAAATAACATAAGCACGGGATCCATCATTAATGCCCTTGCAATGGCAACCCTTTGTTTTTGACCACCTGACAAATTATCTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 67957-65020 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBFC01000005.1 Thermosipho affectus strain ik275mar contig_15B, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 67956 36 94.4 37 A...T............................... GACGGACATGATGGCAGTGTTAGGTTTCAATTGTCAA A,AT,CC [67942,67944,67949] 67878 36 100.0 36 .................................... TTTTAATACATTCACTGTTTCATATGCTGCATAACT 67806 36 100.0 35 .................................... TGTTGTATCAAATCTTGGAGCACTGTTAAAAAGCT 67735 36 100.0 35 .................................... TGGTAAAGCGTATATTGCTCAGTTCGCTTCTGCGT 67664 36 100.0 36 .................................... TGCTGAGTCCCAAACCGTATTTGTTGTCTCATTAAG 67592 36 100.0 35 .................................... ACAGCACCACTTAAAAACTGCCAAATTTTACGAAT 67521 36 100.0 37 .................................... GCTGTAAAGGTTTCGCCCATAACACTTCCTGTTGTTC 67448 36 100.0 39 .................................... CAAGTATAAGCACAAGTGCACCTGATGGAACATATACAG 67373 36 100.0 39 .................................... TTTTCCCATCCACACTTAAACGGGGTTGTCTATGTATAA 67298 36 100.0 34 .................................... GAACATTCTCCATATTCCCATTTTTTCACATAAT 67228 36 100.0 34 .................................... GATATTCCCTACAACCTTGATTTGACCATTATAT 67158 36 100.0 39 .................................... TGGATGAAATGGGTGTCGGAATAAATATTTATAAAAGGA 67083 36 100.0 37 .................................... GGATATGGAAACAGAAGAAATCATCAATCTTATCGAT 67010 36 100.0 37 .................................... TCTTTTTTAAAATAACCGCTAATAAATATGATATCAG 66937 36 100.0 37 .................................... AATCAATTAAATTGTATTTGTCATCTATGGCAATTTT 66864 36 100.0 36 .................................... TGTATCAAATTGATTCGACGATACTTCTAAATCGAC 66792 36 100.0 37 .................................... GGTGCTGCAGATGTTGGTCGAACAATGGCTCGCGAAT 66719 36 100.0 35 .................................... ACGTTGGTTTGGCAATAATAAATGGCAATATTGTT 66648 36 100.0 36 .................................... TGAATGTTACAATTATTGGTGCCATTTCCACAATAT 66576 36 100.0 37 .................................... ATTGTGTTACGTTGATGCCATTTGTTTGCTTTAACTG 66503 36 100.0 37 .................................... TATTAAACGTTGAATCTAAAGCCCCACTTAATTGTGC 66430 36 100.0 36 .................................... GAAGAAGGCATCAACCTTCTTCTTCGTCTTCCTGGC 66358 36 100.0 36 .................................... TCCTAAAGCTTTTGCTGCATCTAACACCACTTTAGA 66286 36 100.0 40 .................................... ATTATAAAGCAACATTTTCTGTATATGCAAAAGCAGGTTC 66210 36 100.0 36 .................................... AATCTATTCCATTTAACCACATTCTTAACGCTATAA 66138 36 100.0 34 .................................... TCATGCTCATCACCTCTTTCTGTTTTGTTAATAT 66068 36 100.0 34 .................................... AGGCGTTATGAGTCACATAAGCATTGTACTCCTA 65998 36 100.0 38 .................................... AACATAGAAGCAAATGATGTAGCAATATTTACGCAAGC 65924 36 100.0 36 .................................... ATTTGATACAACTCCTGATTGGTCGGTTGCAAATGC 65852 36 100.0 37 .................................... CGAAAAGTGTAATTGTAAATCCAAGCTTGGAAGTGCT 65779 36 100.0 35 .................................... AGAAGAATTAATTATTTTGACAAAAAAACAATACC 65708 36 100.0 35 .................................... CTAATATCAAGTAATGTTTTAGCAACAGAATCAAT 65637 36 100.0 38 .................................... ATGGACCATGCGATGGACGCTATGCGATACGCTATTTT 65563 36 100.0 36 .................................... AAAAATGAACATGGCGGATATACTTTTACCAAACAA 65491 36 100.0 37 .................................... GCTACTTCACTGGCAGGTATTGACAATTGAAACCTAA 65418 36 100.0 35 .................................... GATGTGCCATTGAATTGGCCATAGAAGCAACGAAA 65347 36 100.0 36 .................................... TTTTTAGTAAATGATTTTAAAGTTTCCTTTTCAAAT 65275 36 100.0 36 .................................... TATTGCAGGTTTAACAGATAATTTAGCGCGATCTAA 65203 36 100.0 39 .................................... ATTAACCGACCTTTTGAAATTGGTACAAATAACTTGTTT 65128 36 100.0 37 .................................... TTTAATTCAAGCGGAATTTTTGCATAATCTTTATGCA 65055 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 41 36 99.9 36 GTTTGAATTCCATTTTATGGAATTAGGTTTTTTAAC # Left flank : TATTTTCCTCTTTTTGGCCATTTG # Right flank : ACTATCAATACTAAAACAAAAAAAATAAATTGTCAAGGACCGTAAATGCGTGTGTTAACATTTTTTACTTAAAAAATTTTTAAATAAGTTTATTTCAATGTTAGATAGTTGTTTATTGGAGAGTGTCGTGGATATTATATATTTTTGAGAAAAATAAGATTCGCGGATAGATTTTAGTTATAATTTAGTTATAATATATAATTGTCATTATTGGTTAAAATATCTATTTTTACAGTACCTATAATTTCCATTTTGGATAAATTTATTGGGATAATTAAAATTGAATCTGTATTTTTGTCTATTATAGGATTTATCCTTAAAAGTATATTATAAAGTTCTTTTTTTGGAACTTGGCAAATAAATACACTGTATTGAAGCCTTTGTCCATATTCTTCTAATATTTTTGATATTTTATTTCTTTTCTTATCTTTCTTTATATCATAGCTGATTATATATGTCATCATGAAAATCACTTCTTTACAATGAAAGGAGTATATTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATTCCATTTTATGGAATTAGGTTTTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 14027-15653 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBFC01000024.1 Thermosipho affectus strain ik275mar contig_8A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 14027 36 100.0 43 .................................... TGGGTCAACGACATTCTTTACGGGGACAAATAATGCCCCACAA 14106 36 100.0 41 .................................... ACCACGCGTATCTCAGAAGCATACATGCTTCTGGATACGAA 14183 36 100.0 38 .................................... AACTACATTATCAAAAACCAATTTCATGTTGCATTCTA 14257 36 100.0 40 .................................... ATCACAATTCCGTACAGTGGGAATTCAGTGGTGTAAATTA 14333 36 100.0 40 .................................... TTCAAGGCATTTGGACTTGCTAAAAATGGTTCGGTCGTTA 14409 36 100.0 40 .................................... TTGGACTCGCTTTTTTCTATAGCTTGACCAAGCTTTATCA 14485 36 100.0 44 .................................... AACTTGCGACGGGCGACATCTTTGTAATTTACACCACTGAATTC 14565 36 100.0 39 .................................... TCTTTTTAGACCTTCTAAGTCTCCTTGTTAGCATTTCTT 14640 36 100.0 41 .................................... AGTCCAGTTTCTGTTTAAAAGTATTTTAGCTAGCTTTGTTG 14717 36 100.0 38 .................................... TACCATTAGCTACTAGATCTTTTAGCTGACGTTTAGTG 14791 36 100.0 39 .................................... CAAATTACAAAGATGTCACCTACGGAGAGTTTGCTACCG 14866 36 100.0 40 .................................... TATGTTCAAGAACAAAGGCCCAGCCGGCCTTGTCGGGTTT 14942 36 100.0 36 .................................... TAATTTCTGGTGGTATATCTGAGATATCTGGGATAT 15014 36 100.0 36 .................................... TAATTTCTGGTGGTATATCTGAGATATCTGGGATAT 15086 36 100.0 40 .................................... TCATAGACTTTTCCTGTATCACCATTGAATCTAATGAAAC 15162 36 100.0 40 .................................... TAAACAAGCTCGCTTGCAAGTGAATCTCCATTAGAAAACG 15238 36 100.0 40 .................................... TAAACAAGCTCGCTTGCAAGTGAATCTCCATTAGAAAACG 15314 36 100.0 38 .................................... AAGATGCCTTTCTTGGTAACGCTCTTGATCGCAGCAGA 15388 36 100.0 41 .................................... TTACTGCTATCAAACTTCAAAAATCCTATGCTTTCTAAAAT 15465 36 100.0 37 .................................... AAAGTCTTTACTGCCGTTTGTATATTCTGTTTATCTT 15538 36 100.0 44 .................................... TCGTCCCAGTCCCACCCAGCAAGTTTCCTTGCCGGGGGAACCAG 15618 36 97.2 0 ............C....................... | ========== ====== ====== ====== ==================================== ============================================ ================== 22 36 99.9 40 GTCCGAATAGTATTTCTCTCTGAAAGAGATGGAAAC # Left flank : AATCACCAAAAAGGTGTAGAAATAAATATAATAAGGAATTGTACAGATTATTCATTTGAAAAAATAGCAGAGCATATATATGGTTTAACAAAAATCAACCCCCCTTCTCCTTTTTCAGAACGTAGGTTGCCATATCCATTGTATATTGTTAACAAAGTAGCTTTAAGTGATTACGAATGGAAAATTTATGTGCCAATTGGAAAGGATAAAATTTATAATTTTATTAGGTAATATGTGTATTTTTTTGTTGTCTAAAAATAAATAATTTTATGGTAAAATAAAGGTGATAACATGTTAAATTTATACCTATCAAGTCTGAAATAAAAATGTTGAAAATTCGCATAAATAAATGTTTTATCAAAAATAGGTTTGGAACCTAGTATTTAAGAGGGTTTGTAGCAATTTTTTTTAAACAAAAATAAAGAAATGTTCTTTGAAAAGTTGGGTTCGGAAAAAAGCATTTACAAAGTATCATAAATAAACGCTTGAAATTCTTTAGA # Right flank : CCGTTTAGGACTGCCTTGCCATCCGCACTCGAATTACGGAGGAAATTATGCACCGCAAATTCCGAGGAATGTTATTTTAAGATATTTTAAAGAGGGGGATTTTATCATCGATTTCATGATGGGAAGTGGTACGACTTTAATTGATGCGAAGTTGTTAAATAGAAGAGCAATTGAATATGATATAAATCCCGAAGCACTTAAAATCACAAAAGAAAATTTAAATTTTGATGGAATTTTTTTGTATAAACCTATTGTTGAGATAGTGGATGTAAAATTGAGAGTATAGATTTAATTATTACTCATCCACCATGTTTAAATATAACCAAACATTCAGATAGAAAAATAAAAGAAGATCGTTTCAATATTTCAAATGTAAAAAAGTTCTGCGAGGAATTTGAGAAAGGGATTAAAGAAGTTTATAGAGTACTTAAACCTAATAAATACTGTGCAATATTAATTGGCGATACAAGAAAAAAGTGCATTATATTCCTTTGTCGTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATAGTATTTCTCTCTGAAAGAGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //