Array 1 290227-290554 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPXB01000001.1 Yersinia pseudotuberculosis strain IP32463, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 290227 28 100.0 32 ............................ AACTCGAAGAGTTATTTATTGCAGGTTTCAGT 290287 28 100.0 32 ............................ GAAAGGCATTAAACCCTGTTTGAACATTGCTA 290347 28 100.0 32 ............................ GCCAGCAAATTCTTTAGCTTCGATAACGTCCA 290407 28 100.0 32 ............................ ACTCGATATCCGGTGCCGCACTTACATCAATA 290467 28 100.0 32 ............................ GGTCAGACTATGCGCGATGGATTGATTAAAGT 290527 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATTGATTAGGATGTTTCAGACATTCGCGTGGGAATTTTCTTACTTTCATCACAGGAACCTCATTAGAGCACGCCAATATTCTTTTTTAATGTACCTAATAACCTCATTTAGTTAATAATCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACGATAATAACGCATGGGGATTCTTAGCCTATTCGCATCAGGGGAATCATTTTTTGACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAAGAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : AGGGTCACTGTTTGTGCACCAGCGCGGCCCCGGCCTGATCCTCTTGCTGGTAGGCCAACGCCACGACCAACGACTGCACCAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCAGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCCGTTCACCTGCTCACGTAACATCCCCCCGAGGCCATGGAGTTGCACCGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGTAGTTCCACCGCGCGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGTTGTAGTGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2147-3077 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPXB01000002.1 Yersinia pseudotuberculosis strain IP32463, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2147 28 100.0 32 ............................ ATCGACATACACGCCATTATCATGCTGATAAT 2207 28 100.0 32 ............................ GTTCGTTGAGTTGGCTTGATGGCCTCTCAACT 2267 28 100.0 32 ............................ CCTCTGACACAAGAGGAAAGCGACCTGATAGA 2327 28 100.0 32 ............................ AAATAAAAAGCATTAAAAAACAATCCTGTAGA 2387 28 100.0 32 ............................ TGTAGATATGTGGATAAGTCATTTGTGGGAAA 2447 28 100.0 33 ............................ CTGATTACTCGCAAAGTTAATAATGCTTCTATG 2508 28 100.0 33 ............................ CACGAGGCACGGTGCAAGTCAGTGTTGGCGTGT 2569 28 100.0 33 ............................ AGCAGCAATGGGATGAAATTAATAATATTAAAA 2630 28 100.0 32 ............................ AAATTTTATTAGTGAGAAATGTTACTTTATAC 2690 28 100.0 32 ............................ TCTGAATACAATTTTTATCATAAAGAAAGATT 2750 28 100.0 32 ............................ AGATTATATAATCCATCTAATCAAATGGCTCA 2810 28 100.0 32 ............................ TAAACAGACTCAATAAACTGTAGAACGTTTTC 2870 28 100.0 32 ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 2930 28 96.4 32 .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 2990 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 3050 27 85.7 0 ...................-A.A.C... | T [3074] ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 107423-106013 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPXB01000007.1 Yersinia pseudotuberculosis strain IP32463, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107422 28 100.0 32 ............................ CAGTTGAAATACATGTTCAAGGAAATGGTTTA 107362 28 100.0 32 ............................ AGACACAGGCGAAACCATATTCTATATGAATC 107302 28 100.0 32 ............................ CCTCTATGTTTGACTCACTACACTCTGAGGGG 107242 28 100.0 32 ............................ ATGATTTTCTAATTTTTCTTCAAACAAAGTAT 107182 28 100.0 33 ............................ CAATTGAAATAATGGTTACTGGCAACGGACAAG 107121 28 100.0 32 ............................ AGACACAGGCGAAACCATATTCTATATGAATC 107061 28 100.0 32 ............................ TTTAAAACGTGAGCAATAGATATGCATAACCA 107001 28 100.0 32 ............................ CTTGGGAGCATGAGAAACGTATCCATCAGTTG 106941 28 100.0 32 ............................ GTTGTGGGGTTAAATCGAGTTAGCGATACACT 106881 28 100.0 33 ............................ GTTGCCGCTTAATGATGATGCTGTGATCATCAT 106820 28 100.0 32 ............................ GCTAATGGTGCTGAAGGAACTGGGGGGGTGGG 106760 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 106700 28 100.0 32 ............................ AGACACAGGCGAAACCATATTCTATATGAATC 106640 28 100.0 32 ............................ TCAAGTACCTAGGCATTAAAGTAATTAATTCA 106580 28 100.0 32 ............................ AATTTATTATAAGTGGAAATAATACTTGACTT 106520 28 100.0 32 ............................ AGCTGTAGGTTCGTCTGCGTCTGTTATGGCCC 106460 28 100.0 32 ............................ ATCCAGGCATCAGACCCGACAGTTGTGACCAG 106400 28 100.0 32 ............................ AGCCCGCTGGCTTACGACCCGAAGGGCGGTGA 106340 28 100.0 32 ............................ TACTTCCCTGATCTGCGCCAACGGCTGTTTAT 106280 28 100.0 32 ............................ GTATAATTATTAGCATTATTTAATGTTGTTTG 106220 28 100.0 32 ............................ GAGCATTCCGCGCTCGTCACGCGCCCTTACTG 106160 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 106100 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 106040 27 89.3 0 .....................CC.-... | T [106015] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCCTTGTTATCGTGTTAATTATTGCTTAAAGCCCATTTGCTCTTCATCAGCATATATTGTTACCTCACATGATTAAACTAGAGTGGCAAGAGATTCAGACAATCCTCAAATGTATTTAATTTCTCATTACGTTGATATCAGAGAATTAACGCGCTAAATTACCCAAAGATGCCAAGCCTCACTTTTTAGTGGGGCTTTTTTTATGCCCGCCGGAAATCACTCACTATGTCTGCTATCGATATCACAACAATGCGCGGCGAAATGCCACGGGCGGTTGCACATCTATTGCCTGAGCAAGCGGCGACCATTGCTAAAAACTGCCATTTTCGCCATGGCGTTATTACACCGCTAATGGCTGATGAAGACGGCGGGAAAACTTTCACTATGTCGCCAACCACAATTTTCCGTTACCGCGATGATTATTGGTTTGCCTGGACTGACATTGTCGATGCGATACGCAGCCCAATAGCACAGGATAACGTGTGTTCTTTCCACAAGA # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //