Array 1 5565-1448 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJEB01000041.1 Paucilactobacillus nenjiangensis strain 11102 contig41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5564 36 100.0 30 .................................... ATGGATATATAACTTATGGTTCGTTTCATC 5498 36 100.0 30 .................................... CTGTTAATGGTGTGTTTGGTACAACCGACT 5432 36 100.0 30 .................................... TAATGAGGGTCAAAAAAATCATGACAATAG 5366 36 100.0 30 .................................... ATTTCTAAATCGGTTAGTTCTGACGCGCCT 5300 36 100.0 30 .................................... TCAGTTAAGCTGGCGCCCTGTTTAAGTTTA 5234 36 100.0 30 .................................... AGGAGTGATAGCAATGGCGTATTCTGAAGA 5168 36 100.0 30 .................................... CGTGGTGAGCGTGAAGTTGAAAACATGCAA 5102 36 100.0 30 .................................... CCTTCTTTGTCTTGCAACTTATGGATTGTG 5036 36 100.0 31 .................................... CTTTCTTTTTACAATAATTTATTCGTGAAGG 4969 36 100.0 30 .................................... ACAAACCGATACTGATACAGCTTCAACTCG 4903 36 100.0 30 .................................... TGCTAAAATCCAAGAACAAAAACAAGGCGT 4837 36 100.0 30 .................................... GCTGGCATACCGGCATCAAACATAATCTTT 4771 36 100.0 30 .................................... GCCATCGAAATATAACTTACTAGCACAGTA 4705 36 100.0 30 .................................... ATGTATTAATGGGTAAAATTGATGCTCAAT 4639 36 100.0 30 .................................... CAATTGTTTTGGAATATTGAACTTCGTAGT 4573 36 100.0 30 .................................... ACGGTCGTTGACATCATGAAGCCAACGCCA 4507 36 100.0 30 .................................... ACAACTAATTCTTGAATGCCATAGATCTCG 4441 36 97.2 30 .................................G.. ATAACAGCCTCATCTTTGCGCAAATTGTCA 4375 36 100.0 30 .................................... TTACTCAGGTATCCGATGCGATTACAGCCT 4309 36 100.0 30 .................................... CACGAAAAATTACTTAAATATAAGTGCTTT 4243 36 100.0 30 .................................... TCGACCCTTTAAAATACATAATCGCGTTGT 4177 36 100.0 30 .................................... AAGTTTGAAGATAAGTTTGGTATTCCATTC 4111 36 100.0 30 .................................... CTGCGCCAGTAGCAGTCTTCTTGATTGTAT 4045 36 100.0 31 .................................... ACGTCAAAGGTGGTTTAATCTCTGAACGATG 3978 36 100.0 30 .................................... ACGACTATATGACGAAATTAATGACACACC 3912 36 100.0 30 .................................... CTTCACCTTACTTGAGCCAAAAGAAACTGA 3846 36 100.0 30 .................................... CTTGTGCGATTGGATCAAAGTGAGCATCTT 3780 36 100.0 30 .................................... AAATCATTGAGTAAAGAAAACAGGGGATCT 3714 36 100.0 30 .................................... AAGCTGTCAATAAGCTCCATTCAAGCTCAC 3648 36 100.0 30 .................................... TGCCATTAACAAAACTAGTAACGATTATTG 3582 36 100.0 30 .................................... AACAACATCAGCCACTCATCTAATGTATAT 3516 36 100.0 30 .................................... CGAGCCTTTTCTACTGAACCTTGTAAGCCG 3450 36 100.0 30 .................................... TCTTAGCGTTTAATTCATCACGAACCTTTT 3384 36 100.0 30 .................................... GTTGATAAATAAGTTAATTTATTTTTAGAC 3318 36 100.0 30 .................................... ATTTCGACACGTCAAACGAGATGATTCAAA 3252 36 100.0 30 .................................... TATCGATTAAAACGATCAAACCCAAGCGCT 3186 36 100.0 30 .................................... TCGCTTATGCAAATATGACGTATATTGCTA 3120 36 100.0 30 .................................... CAAAAAGACGAACCCACCACTTGCCGGAGC 3054 36 100.0 30 .................................... TTTGAAGACGGATTGAGTCCGACTAATATT 2988 36 100.0 30 .................................... ATTGTTACTGCTTATGGTCCTGAAGTTTCA 2922 36 100.0 30 .................................... GGGTAAGCATGCTCATACTTACATCTGGTG 2856 36 100.0 17 .................................... TGCAAAACTTGGTGGGT Deletion [2804] 2803 36 100.0 30 .................................... CCATTGCCTTCTGAATTGGCAACGATGTTC 2737 36 100.0 30 .................................... AAATCGGTTTGCTAATAATAAAATCTTTAC 2671 36 100.0 30 .................................... ATAAAGTAGCTCAATTTGGTTTGCCAACTT 2605 36 100.0 30 .................................... CTTCAATTATTGCGATGGCAGGTGATACCG 2539 36 100.0 30 .................................... AATGCTGATTGAACCATGTCTGACGTTGCT 2473 36 100.0 30 .................................... CTTGATGTGCGGCTATCTAGTCGGTTCTTG 2407 36 100.0 30 .................................... TACTGCAATGGGTATCAGTGCAGAACAACT 2341 36 100.0 30 .................................... AAAGATACCCAGTTGGTATTGCATTTAGAT 2275 36 100.0 30 .................................... TGATGTCGGCGCGCAAGCTGACCAATCGTT 2209 36 100.0 30 .................................... CGGATATGTCCAAATCAATCAATTCTTACT 2143 36 100.0 30 .................................... GAATTACACGCCGATTATTCTTCTTGTGAT 2077 36 100.0 30 .................................... CACAATTGGACGCGGCTGGCTTTCCCAATG 2011 36 100.0 30 .................................... CACCAGATACTGTTGGAGCTGGTTTTTCTG 1945 36 100.0 30 .................................... AGTCATACGGATTTTTAGGCGGATTATACG 1879 36 100.0 30 .................................... AAAAGTATTTTAAAAGGAGATCACTAACAT 1813 36 100.0 30 .................................... CACTGGCGAAATGACTATTCCAATCATGAA 1747 36 100.0 30 .................................... ACAGAAGCAGAGTATGCTGCATTAATTGGT 1681 36 100.0 30 .................................... AAGGTATTCCGGGAAAAAATGGCGCCGACG 1615 36 100.0 30 .................................... AAAACAACAGATGTTAGATTGGATTGACAC 1549 36 100.0 30 .................................... GAAGACCGTGCAACCAAACCAGCTGCAGCA 1483 36 94.4 0 .................................G.T | ========== ====== ====== ====== ==================================== =============================== ================== 63 36 99.9 30 GTTTTAGAAGAGTATCAAATCAATGAGTTCGAGACC # Left flank : TGGAAAATCTTAACAAGTTGTTTCAAGTTAAGATTCTCAAACAGGTGTACCAAATAATGCCAGATGAAACACAACAAAAGTTGATTGATTTAACTAGACAGATAAAAAGTATTGTGTCAGACACAGTTTACATGATTGATTTACCACTGGAAGTTAATGCCGAAATTGATATTATGAAGATAATAAAATTTTCAGAAATTGAATACAGTCCTACGATGACATTAGGTCCATATGCTATAATTGAGACAATTCTAAAAACTTTAAGTGAGTTAAATGAAACAAAAATTATTGGGTTTATGAACATATCTGACTATTTGAGAGAATCTGAATTTGTGGATTTAGTTCAATTAGTTAAGACATTAGATTTGAATGTTCTTCTCATTAAATTTTCAGAAATTCAGAGGTCTGAAAGATATAATGAATGCCGTTACTACTACATTGATAATGATTTTGTTGATTGGCGATACTGATCAAAATGAAAGAATTATTATAAGCAGACG # Right flank : CCTAATTGTTTCAAAGCTTTTGGAGGTTTATAGTATCAGATCAATGAATTCAAAAACATTGGGTTATTGAACATTTAGTATTCGATTTCATATCTTAAGAGGCAGCCTGAGAAGGTTGTCTTTTTCGTTCAAAATAATTTATAAAAAATAGTTAAATTATTAAAATCACTTTAAAATAAGTGCATTTTTGGCATAATTACAAATATTTATAAAATAAATAAAAATAATTTTAAAATGTTTTATAAAAAATAATAGTCATAATTTACGTATATGGTTCATTAATTGTACGATAAATATATTCCACAATTTACGTTGTAATTAAATAAACTTTCAGTACGTAGTTTATTAAATTTTTTGCTAAAATACTGTACAAACACCTATTTAATGGGATTCGTAACAAAAATGTAGAATTTGCGTAAAAAAGTGTACAAATCCTCATAAAATGGGGTTTGATTGTTTATAAAGATTTTTTAAAAAGAAAGTAATTATATTATAATTAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTATCAAATCAATGAGTTCGAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 9834-10534 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJEB01000023.1 Paucilactobacillus nenjiangensis strain 11102 contig23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9834 28 100.0 33 ............................ TATATGAAAGACGTGTTAAATGCAAAACTTGAA 9895 28 100.0 33 ............................ CACGTCTGATAGTTTCTTACTCGTTGCTAATGT 9956 28 100.0 33 ............................ TATCAATTCCCCAGTGATGAACTTGAAAATTTC 10017 28 100.0 33 ............................ TAGGCAACAGCGATACGGAGATTCAACTTATAA C [10026] 10079 28 100.0 33 ............................ CCGTAATTGATGAAACTTTTGATAAATCTACGG 10140 28 100.0 33 ............................ TACAATCAAGCAAGTTCATATTGCAGTTCAGCA 10201 28 100.0 33 ............................ TGTTCAAATTATCAAAGGCAACTGGGGTCGTGA 10262 28 100.0 33 ............................ TGAATGCCGGATATAAGACATACGACCACTTGA 10323 28 100.0 33 ............................ TAAAGAGCTGAAATTATACACGGATATGATTGA 10384 28 100.0 33 ............................ CATGAAACACGATCCAGCAAATATTAACGCAGA 10445 28 100.0 33 ............................ TATAGAAAACGACCAAGGCTTGCCAATATCATC 10506 28 92.9 0 ......................CA.... | T [10531] ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.4 33 GTATTCCCCGCACACGCGGGGGTGATCC # Left flank : GTTTCTACAGATAAAATAATCGCGATTGGTGCTGTCAAATCTTACGGTAGTAATGTTGAAAATTTTTATCAATTAATTAACACTGATCAAAAAATTCCGACAGCCGTAATAAAGTTAACTGGTTTAACCTTAGAAAAGTTGATCTCCGAAGGCGTTTCTTTAGAAAATGCCTTAAGGGGATTTCAAAAGTTCATTAGTGACTTGCCTTTGGTCGGATACAATGTTCACTTCGACGAAAGCTTTTTGACGGCAAGCTTTAGAAACACTAAGCTGGCAAGTTTGGTCAATAATTTTTATGATTTGATGCCAGTCGTTAAAAATAATAATCGGTTTTTAGATAATTACCGCTTAAAAACAGTGTTGGAGACGTATAATATTAAAAACGAAAATTTCCATAATGCGTTGGCAGATGCACAAGCGACTTGTGATTTGGCAGAGCAACTCATAAAAAAAGGAGTTTTTAGATTTTGAGAATGTTGGCATGATGGGATTTGTTTAGT # Right flank : CATAATTATAATTGCGATGAATTTTTTCTTTTTGGCAGATTGTAAAATTTAAGTTGAACATTTAAGTGGACAGAAAAACCCATCAAGGTCTTTAATGGTGTTACCACACAATCCATTAGAAAGAAGGACCTTGATGAGCACCACTATTTTATCATTCCAGAACCGTGTTGTCATTGAAACGCTTCATAATGAAGGACGTTCCTTGCGATACATCGCTAACTACTTAGGCTTTAGTAAGACCACCATCTTTAACGAACTTCACCGGCTAAATAGTGAGTACCAGGCTGGGCTAGCGCAAACTGACTTTGAACGAAAGGTTAGTCAACGGGGGCGGAAGTCTTCGCTCACTAAAAACCTTAAACACTTGATCGAGGAAAAGATTCAAGTCCAGAAGTGGTCCCCTGAACAAGTTGCCCATGTGGTGGGGATTGCCTACAAGACGGTCTATAACTGGATTGATCAAGGATGGCTTGATATACAGTTGCCCGATTTGCCTGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4211-3648 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJEB01000044.1 Paucilactobacillus nenjiangensis strain 11102 contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4210 36 100.0 30 .................................... TGCCGGTGCGTTTGGAGTTGCTGTATCGTG 4144 36 100.0 30 .................................... AATCACAGAGTCTATAGAAGAAGACATTTA 4078 36 100.0 30 .................................... TGTTGATCGGTTAATTCATTTGAGCCTTCA 4012 36 100.0 30 .................................... TCTTAAACGACACGGTTGAACTAATGGCGG 3946 36 100.0 30 .................................... TAGTGACTGCTGAAAATGCAGATCAAACTG 3880 36 100.0 30 .................................... GGAGGAATATTAAGATGTTAGACGAATACC 3814 36 100.0 30 .................................... TGCAAAGCCACAATTGTCATGATTGTGCCC 3748 36 100.0 30 .................................... AGCATATTTGAGCAACAAAGCTAAATCAAC 3682 35 83.3 0 ...............CG.......A...-..A...T | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.1 30 GTTTTAGAAGCTTGGTAAAAATATGAGTTACGATCC # Left flank : AGAATGATTTAGATAAATTGTTTACTAACCGACTTTACAAGCATTTTAAAGAGGTAGTAACTCCCGAGCAACAACAGCAAATTTTTGAATTAAGCCAACAGCTTAAATTGGCGGTGTTATGCGCGTCGTACTCACTAGATTTACCATTACAAATTGAAGAACAAACGGAATTAGAAAAAGTTTTTAAATTTTGTGATTTAAGATTTATACCGACTGTAGTTAACCGTCCATATGATATAATTGAGACACTTCTAAAAACTTCTGTAGAGTTAAATGAATCTCGGATTTTAGGACTCATGAATGTTTCTGACTATTTAACGCGTGACGAGTTTAGCGAGTTAAATAGATTGATTCAAATGTTAAATATTAAAATTATTCTCATTAAGTTCTCGGAGATTAATCGATATAAAATGTTTGAAGGATGCCGGTATTACTACGTTGATAATGATTATGTTGAATGGCACTATGAATGATCATTATAGATTGATTATAAAATAACG # Right flank : CATTGCTCTAATCACCGATGTTCTTTTACCTAAGATGCCGAATTATATCTTGAGTCAGATATAACAAACTTGGCATGTTGCGAATCATTTGCGCACGATCAGACACTATGAGACCAATAACAGCAGTGAACTTAACGAACGGAGAAAATTACTGATGATTGAATGGTCACAAGATACGATTGATGCGTTTCGGCAAACACTGCTTGATTGGTACGATACTCATGGGCGTGATTTACCGTGGCGGCAGGATCATGATCCGTACCACGTTTGGATTTCAGAAATTATGTTGCAACAGACCCAGGTGAATACGGTGATTCCGTACTACGAACGGTTTATGACGTGGTTTCCGACGGTACAAGAGCTCGCGACAGCACCAGAAGCACGATTAATGAAGGCGTGGGAAGGGCTCGGGTACTATTCACGAGCGCGCAATTTGCAGAAGGCGGCCCGACAGATTGTCGACGATTATCACGGACAATGGCTGCAAACGGCAGACGTGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGCTTGGTAAAAATATGAGTTACGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //