Array 1 863636-862938 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMNL010000001.1 Oxalobacter formigenes isolate MGYG-HGUT-02505, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 863635 33 97.0 33 ................................C AAAATAGGCGGTAGGTTATGAAACAGACAACTA 863569 33 97.0 33 ................................G TATCGGCTCCATCGTCACCAGTACCGGCACCGG 863503 33 100.0 34 ................................. TTGCCAATTATGCCCGCCTGTTCCAGTCTGTCCG 863436 33 100.0 35 ................................. CGCGCTGAATATACAGGCTCCGGCGCTCTTGTCTC 863368 33 97.0 35 ................................G CGGACTGTATCGCCATTTACGAACAGTCGTACCGC 863300 33 97.0 32 ................................A ATTTCCGAGCAAAGGCATTGATGCTCAATCCC 863235 33 100.0 33 ................................. CTGACGATGACCAGGAGGCCGTACTGGACGCCG 863169 33 97.0 35 ................................A CCGATTAGAAGCCCGACTATGCAATAAATCAACTG 863101 33 100.0 33 ................................. CCGGCCAAAGACCTTGAGCGGACGCTAAACCGG 863035 33 97.0 33 ................................G TCCCCGCACCGGATGCTGGAGACGAGGAGAAAG 862969 32 84.8 0 .....................C..GG.-..C.. | ========== ====== ====== ====== ================================= =================================== ================== 11 33 97.0 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Left flank : TCAACACGGAAGACCGGCAGGGACAGAAACGGCTCCGGAAAATAGCGAAGCTCTGCGAAAACTGGGGACAGCGCGTCCAGTATTCGGTTTTCGAATGTCTTGTCGAACCGGCGCAATGGACAGCCCTGCGTGCCGCTTTAATCAATTGCATGGATGAGGAAAAGGACAGCCTGCGCTTTTATTTTCTGGGCGCCAACTGGAAAAACCGGCTGGAACATGTGGGGGCGAAAGCCGCCATTGATCCCGAAGGGCCGCTCGTTTTCTGAAAACCGCGGCATTGAAAACCCGCTTGAGACAAAGGAGACCGCTTACGAAAAAACAAACGCGAGAACCAGAGGTTCACAGACTCTTCCCGGAGAGATGCTCGCACGCCCAAGTCTTTGAAAATAGGGCGAAAACGGTTTCCCTCATAAAAAAAGGCCGTAACGGGCCAGAAAAAAGGGGAGGTTCTCGCATTTTGCCTTGCAAAAGCCCTGTTCATCAGGTTTTCAAAAGGCACA # Right flank : CCATTTTCCGTCCTGTCGTCAATACCCGTTTATGAACTGCCCCGATTGCCCATGAGCCAATCGGAAGCGCCATTTCTCCGGACAGACCGTACAGGAAGCCACGCTGTTCTTTTTTGCACGCGAATGGAATCGCCTTTTTTCCGGAAAGCGCCTGCCGTTTCCGATTGCCACCTTGCCCGGGCAGGGACGGCTTTGCCGGCAAGGGTGGCCAGCGGCGAAAGCGGCGGCAGCGGTTTTTTCCCTGCTGACAGCCTGTTTTCGCCTTGCCATTTCTTTGAAAAAGGACTTGAAAAATATCAACGGGAACCCATTTTACAAACAGGGACGGGATTTTCCATCAGGTGAAAATCCCGGTTTCGGAACCTCTTTCCAATACAAAAAGGAAGGGGAGACGATATGACAGACACCTGAAAGGCCAATCCGTTTGGATGGCTTGACATAATGGAGGAATAGACTATGTTACCCAGCGTTTTTGGTGAAAAACTGTTCGACGACATGTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1078229-1080420 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMNL010000001.1 Oxalobacter formigenes isolate MGYG-HGUT-02505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 1078229 31 100.0 34 ............................... ATCGTCAGGTCGTTTGCGTCCTGCTGGTCAAATC 1078294 31 100.0 33 ............................... GCCGCCGATACCATAGTATCCTGTACTTGCCCC 1078358 31 100.0 36 ............................... AATAGATGATGTGTTTGGGGATGTCGATGCAAACGG 1078425 31 100.0 35 ............................... ACGCTGGCTGGGTGTATGAAACGCCCACCACATCA 1078491 31 100.0 36 ............................... ATCGGATTGTGGAATTTTTGCGACGATGGCGGCAAC 1078558 31 100.0 34 ............................... AGGCGCGGTTCGTAATTTTCAATCAGCCATTCTG 1078623 31 100.0 34 ............................... CGTCTTTCGCCCGAATTGTGAACTCTTTTACTGC 1078688 31 100.0 33 ............................... ACGGTTAATATCAAGCAGCTTTTGTAATGTCGG 1078752 31 100.0 35 ............................... TATAATGCATACATCGCGTCCATCTTGTGGAATTG 1078818 31 100.0 34 ............................... ATTGTGCTTTCCTGCTCCACGCTCCACCCGTCCC 1078883 31 100.0 34 ............................... TTCGCGGCGCGTGGTCATGCGGTCAAGCTCCTGC 1078948 31 100.0 34 ............................... CTTCGCGGCGCGTGGTCATGCGGTCAAGCTCCTG 1079013 31 100.0 34 ............................... TTGTTGCGCCAAGAATAATAATCGTCTGTCCGGG 1079078 31 100.0 34 ............................... CCAACCCCATCATGTTAAATACGGATGGAAATAT 1079143 31 100.0 34 ............................... CGCTCCTTGCACGCGCTGAATTTTTGTTTTTCTG 1079208 31 100.0 35 ............................... TCCGACGGGTCTGCTTTATAATCGACAGAGATCAA 1079274 31 100.0 34 ............................... CGTTTTCCAGCGTAAAACTAATCCACGCGGGCCA 1079339 31 100.0 39 ............................... CCCGTTCTTCCCCCAGCCGACAACCTCATACTCCAGCCG 1079409 31 100.0 34 ............................... CTGAAATCCTTGAGGTATTCTTCGACGTAATTAT 1079474 31 100.0 35 ............................... TTTTCTGAACGAACTATCTATAACAACGTCCAGAA 1079540 31 100.0 35 ............................... AGCCTCGACATTTTCCGCCTCCTCAAGTGTGTTAA 1079606 31 100.0 33 ............................... ATCGCCATAGCCGAAGCCTTTTTGATGTCCATT 1079670 31 100.0 34 ............................... CCGCTCCCACAAATATGCGCATGCCGATAGCGTC 1079735 31 100.0 35 ............................... AAAATAACCCCAATATCGAGCTGGTTTTAGATATT 1079801 31 100.0 33 ............................... ATCCGGATTCCGTCGCAAATTTCTGCCTGTATC 1079865 31 100.0 36 ............................... CGCGTTAGCGGTTGCCAAAGAGGCGGTATCTTCCGG 1079932 31 100.0 33 ............................... GTCTCCGATAACGTATCGTATTGGCATGGATGC 1079996 31 100.0 35 ............................... ATTGATCAGGCTCACCAGCGTGGTTGCAAGATCCA 1080062 31 100.0 35 ............................... CGGGATCTCGATAAAACACCCGGCAGGGTTTGCTG 1080128 31 100.0 34 ............................... CACATCATTGTGTTTTTGTCCGCGTGCCACATAT 1080193 31 100.0 34 ............................... TCAGTTTTTCAATCGCCGCCAGAATCGCCTTTCG 1080258 31 100.0 35 ............................... TCGATGATGCTTACGGCCTCATTTATCGCGTATGC 1080324 31 100.0 35 ............................... CTTGCGTTGTACAGCACTTCGTTGGTCAGTCCGTC 1080390 31 74.2 0 ..........T..C......C.A.C..GCG. | ========== ====== ====== ====== =============================== ======================================= ================== 34 31 99.2 35 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CCTCACCATCGACCACTTCATGCGGATCAATGCGGAAAAAGACACCGATGGACGCCTGCGCGAACTGGCGTTTGCCACCGGATTCGACAACGCCTGTTCCATGGCCGACGCCATCTCCGAACTCAAATACCGCACCGGCCTGAAAACCAGCCTTGCCGGATACGACCTGACCGACGACCAACTGGAAAAACTGGTTCAGGCCAGCCTCCACCCGAACCTGCAAAACAACCCGGTCCCCATTACCGAAGCCATGCTGCGCGATCTCTACCGCGACCTGCGTTAAATCGCCGCCATCCGGACGCCCGCCCCGGAAAACCGGAAAACGCGGGAACCTGAGGCTCACAGCCTCTCCCCGGTGCGGTGCTCGCACTGGCAAACCCTTGAAAAAACACGTAAAATCGGAACCGGTCGGGAAAACCGTCCCGTTTCGCGTCAAAAACGGGGAGGTTCCCGCATTCTGCCCCTGAAAAGCCCGGTCCATCAGGCTTTCCAAGGGCACA # Right flank : CGTGGAGTAAAACCCCGGCTGTCTGTCGCGAACCGCCGGGAGTACGGCGGCTGCGCCACAACAGGTGCGCTGGCGGAAACGCCAAACTGTCCCGACTGGTCAGCGCTCAGGCGTTCGCCGCGTTTTACAGCCACACGGATTGAAATTCTTCCGGACAGCCTGTAGAGTACATCCTGTACCGCTACACGCGCCGTGCGCGGACGGATTCGCCGCCGGCGTCCCGCCATTGTCTCCGCGTGAAAGCGCCGGCTTTCCGGGCGCCAGTCCCTCTGAAGCGGAAAATGAAAAACCCCCGGCATGGCAGCGAAAGCACGCTTTGCACGACCCGTTCCGGCCGCCCCGGACGCAGAAAAAGGAAGGAAACGCAATTGGAAAACGAATCTGAAGAGTTAAGCAAGAAAACCCGGATTATCATCATGGTGGCCGTTGCCATAGTCATCGGGCTCATCCATCTGTTATACATCAGGCCGCGTTACGGCGATTCCCTTCCAATGATCCTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1416338-1416485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMNL010000001.1 Oxalobacter formigenes isolate MGYG-HGUT-02505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1416338 28 100.0 32 ............................ CGAACAGCAAAAGACGCTTCCATCGGATGAAT 1416398 28 100.0 32 ............................ TGGGTGTGACCAACCGTGAACAGGCATGGCGC 1416458 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTAACCACCGTGTAGGTGGTTTAGAAG # Left flank : CGATCCCTATCGGTAAGGCTTTGGCCGCCAGCGGCGCCCCCTTGCCGTTCCGGACTGCCGCCATCCCTGCCGGCAAGACGTTTTTTCCGCTGCGCTTTGCGGCATTTTCCGGAACCGGCTTGCCTGCCGGGCACCGGGTCTGCCGGCTTCATTCCGGGCAGTCCGGTCGGCCAACCGTTTTTTTAACACCTTGCTTTCAAAGCCGTCCCTTTTCCCCGTCGCCCCGATCCACAAGCAACCGTTCCGTGAAATGTCCGGACAACCCGTCCTGTCCGTTTTTCCGGCCCCGTCCTTCAAATCCGTGCCAAAGCCGCCGTCCCGCCTGTCACAACCGATGCCTTTGCCTTGTACGGAAATGAAACGCCGAACCTTCGTTTTTTTGGAAAATTCCTTACCCCTTGTAAATCAATAACTTACAAACCCCTGAAAAAACGAAGCTTTAAAAAGGATTTCAGGGCAAAAAATCTTCGCAAACCATACCTTATACTGAATATGCTTTA # Right flank : GACGCCCGCCCTTTGTCCGGGAAGCGCCTTCAGAAAATTTCTCCCCGCCGGAAACCGGCAACCGGGACAACTTTTCCTTTCCCGCGGGCAACGTCCATCAAGTTGCACCGGTCTTTCGGCGCCACTCTTCTTCCGGGCTGCCAAACGTGTCTTCCGGCCCGGGTCCTGCCTGATTCCCGCCGGATTTTTCAGCTTACCGGAAAACGGATTGTCAAAGGACCCTTGTCCGTTTTCATCTGCGGCCGGATTGACGAATTTTCCCTCGTCGGCACCATCATACCGTTCTGTTCAGGCATTGCCGCCATTCCCTGTCTGCCGGCGGAAATCAAAAGTTCCCTCCGCGGCGCCCCGAACCGGATCGCCGGCGCGCTGACCGGCGGCAGGCAAATGCGGTTTTTTTCCGGGAATTCCCGTTTTCCCGCCGGCACGGAAGCTCCTTCTGATCTCGCTGTGCATTCTGTCCTTGAGGCACATCGCCGAGACTGTCCAAAAATTCCCTT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCACCGTGTAGGTGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGATCCACCGTGTAGGTGGTTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //