Array 1 468787-469425 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXT01000004.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0050 NODE_4_length_702042_cov_41.728148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 468787 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 468848 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 468909 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 468970 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 469032 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 469093 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 469154 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 469215 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 469276 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 469337 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 469398 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 486177-488951 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXT01000004.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0050 NODE_4_length_702042_cov_41.728148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 486177 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 486238 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 486299 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 486360 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 486421 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 486482 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 486543 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 486604 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 486665 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 486726 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 486787 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 486848 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 486909 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 486970 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 487031 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 487092 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 487153 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 487214 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 487275 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 487336 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 487397 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 487458 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 487519 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 487580 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 487641 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 487702 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 487763 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 487824 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 487885 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 487946 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 488007 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 488068 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 488129 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 488190 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 488251 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 488312 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 488373 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 488434 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 488495 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 488556 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 488617 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 488678 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 488739 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 488800 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 488861 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 488922 29 96.6 0 ............T................ | A [488949] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //