Array 1 432-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCT01000153.1 Bacteroides fragilis str. 3783N2-1 gbf3783N21.contig.153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 431 35 100.0 34 ................................... GAAAAAAATGAAAAAAGGGACCGTACAATTCATT 362 35 100.0 36 ................................... ACCATCTGGTACCCTGTACATGATACCCTCACAATT 291 35 100.0 34 ................................... ACAACAAACCGCAGCCGGAAATGTTTGAACGCGC 222 35 100.0 32 ................................... AATTTAGTAAAATGTGCCCTCGTGGCATTCGT 155 35 100.0 38 ................................... TCAATGACTTAAGAATCATAACGGGTATCTTAGAAAAA 82 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 6 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCTGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : TCTCAACTTGCCGGAAGTACATATTGCCACTTATCCTGTCTTAATCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 117-1160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCT01000246.1 Bacteroides fragilis str. 3783N2-1 gbf3783N21.contig.247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 117 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 194 47 100.0 30 ............................................... TTTCAACATTGATAACATTCTCTTTATCTT 271 47 100.0 30 ............................................... AAACCGTTCAAATATCTACGTAACTGAGTG 348 47 100.0 30 ............................................... TTGCCGTGCAAGCTCGTTTATTTCTCCTAT 425 47 100.0 29 ............................................... TTAGAAGCGGCTAATTGAACATTGCACTT 501 47 100.0 30 ............................................... ATGAACCGGAGCAACTTTCGCACCTGTACC 578 47 100.0 30 ............................................... GGTAATTTGTTATATGTTCGTGGAATTTCG 655 47 100.0 30 ............................................... TGATAGCTTTGTTTCTTGCAAGATTAACTA 732 47 100.0 29 ............................................... TCTCGCAGCACATAAGAAGCCATTTGCAG 808 47 100.0 29 ............................................... ACAGGAGACTGTTCTCTTAATACACCAGA 884 47 100.0 29 ............................................... CTAACCTTCTTCCCGCCTCGAATATTCTA 960 47 100.0 30 ............................................... CATTTCTCCCACACGTATCTATATCCAATA 1037 47 100.0 30 ............................................... AGACCGTGCAGCCTACAACAACACTAAGTC 1114 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 14 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : CCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGCG # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //