Array 1 2142057-2143825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXO010000002.1 Moraxella osloensis strain FDAARGOS_1129 000000F_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2142057 28 100.0 32 ............................ AGACGTACCAAACGCCACGGCTGCTGCTTGAC 2142117 28 100.0 32 ............................ AATTAAAAATATTGGCGATACCATCAAAGCTA 2142177 28 100.0 32 ............................ ATTCTTTATGTTGTGACAGTGTTAATCATGTT 2142237 28 100.0 32 ............................ AGTATGCTATCATTGCCCGCTAATTCGCTATC 2142297 28 100.0 32 ............................ TTCAACACGAATGGTTTTTTCAAAAACATCAT 2142357 28 100.0 32 ............................ TTGACGGTCACATTGCCCATGCCCCAGGTCAG 2142417 28 100.0 32 ............................ TTCTGTGTCTGCTAAATCGGCTAATTCAGCAC 2142477 28 100.0 32 ............................ AAGAGTTTGTTAACGAGTTTAGCAAGTATTGC 2142537 28 100.0 32 ............................ AGCCAAAAATCAGACAATACGGCAGTAAATAG 2142597 28 100.0 32 ............................ ACAATAGCCCCCAAAATTATAGACATGGCATA 2142657 28 100.0 32 ............................ AAGCGTAAGACCAGCACCAGTTAATACATCCT 2142717 28 100.0 33 ............................ ACGGTGACGGTGAATAGTCAATTCTTGTATCAT 2142778 28 100.0 32 ............................ GTAACTCGTCACCGCTCCCGACTTCATACTCA 2142838 28 100.0 32 ............................ CACCAGTTTGCTTGTGGTGGGGCTTTTGACCA 2142898 28 100.0 32 ............................ ACATTGAACAGCAAAACGCTGACATCAAGACT 2142958 28 100.0 32 ............................ GATAGCGTGCTATGGACGGCAGATAGCGGCAC 2143018 28 100.0 32 ............................ TTGGTGCTTTTGATACCAACATCATCGGTCAA 2143078 28 100.0 32 ............................ AATTTGAGCAATCAAGTGAGCGCGGATGCTTT 2143138 28 100.0 32 ............................ AATGTGACGGTAGTTTAACCACCCTAAAGCCA 2143198 28 100.0 32 ............................ TGACGTTATTAACAATGCCTTAGATGATTTGT 2143258 28 100.0 32 ............................ AATCAAATAACGTAAAATTTAGACTTGCAAAC 2143318 28 100.0 32 ............................ ATAATCTACCTCTGAATAATTTGCGGCCAGAT 2143378 28 100.0 32 ............................ AAATATTAGTGTTAGAGAGCAAATTTCAAACA 2143438 28 100.0 32 ............................ AATAACCCTATCGTTACGCCCCACTTTTTTAT 2143498 28 100.0 32 ............................ AGACCGCCAACGCTTAGTGCCTTGTTCATACC 2143558 28 100.0 32 ............................ AAATGAATGTAAGTATCGGATATAGATACAAC 2143618 28 100.0 32 ............................ ACCCATGCTTTAAAGATGAAGCAATCGAGAAG 2143678 28 100.0 32 ............................ TAGATGGCGTTGATATGTTAGCGGCTATGGAA 2143738 28 100.0 32 ............................ AATAATAACCGCCTTTTTTCATATCGTGATCT 2143798 28 96.4 0 ...........................C | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 ATTCACCGCCACATAGGCGGCTTAGAAA # Left flank : GTTTGATAGATTATGTACATATCAAACGTATCCAGCCTGTACCCGAAGTGCATGGGCATGTAGTGGTGAGGCGTTACCGCTACAAGAATTTTGACAAAAAAGTGGCGGAGTTTGCCAACTTTAAGGGCATCAGTGACCAAGAAGCGTTGGCGCATTGTCTTGCCCATAAGCGTGCTATCAAACACTACCCTTTTATCACCCTAAAAAGTCAAACCACCCAAAATGACTATAAACTGTCAATTTGGCAAGAAGTGGCGAAGGATGAAAAAAGTGGCAGCTTGAATACCTATGGGATGAATAATCAATCAGATGCGGTAACCGTTCCCCACTGGTAATCAACCTTGCCGACAGACTATAAGGGTGAATAACCCTTATTTTTGACTCAATAAAAATAGGTATAAATTTCAATCAGTTATATCCAGGCAAAAAATGTAGGGTAAAAAGGGTATTTTTACTTGGTAAGCCTTGCTATAACTGCTTTTTTTGGGATAAAATTCCTA # Right flank : CCTGTTCACAATCTTTTCAATAACAAAGCGATGAAAGCAAGATTGGTAAATTGAAGGCTCGAATTTAAATGACGCTCACAGTTTTTCCATAAGCGTCTATTTTTCTCAAGCCAAGCAAACGAACGTTCTACAACCCATCGCTTTGGTATGACTTTAAACGTGTGCAATTCATCTCTTTTGGCAACTTCTGTGGTAACGGTTTCGCCTAAAATAGATTTAACACTATTAGCAAATGGCTCACCTCGATAACCGCCATCAACCATCACATTTTTTACGCGGCTTAATCGTTTAGCATGTTGACGAAGTAACGTTGTAGCACCCTCACGGTCGGTGATATTGGCAGTGGTAATACAGATAGCATGCGGCAAGCCTTGGCTGTCTACTGCAATATGGCGCTTAATCCCTGATACTTTCTTTCCTGCGTCATAGCCTTTGTACTTAGCGGTATCTGTGTTCTTAACGCTTTGAGCATCGATGATGATAAAACTGGTTTTACCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2144734-2148964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXO010000002.1 Moraxella osloensis strain FDAARGOS_1129 000000F_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2144734 28 100.0 32 ............................ TATTGAATATTTTAGCTATCTTGAAGATTTCA 2144794 28 100.0 32 ............................ GTTATATTGGTCACGGCAAATGCGCTGGGGAA 2144854 28 100.0 32 ............................ GCTTTTTGAAAGTCCGCAAACGTGCTGCCGCT 2144914 28 100.0 32 ............................ ATATTGGGTGACTTGGTACCTGGTGGCGTTTT 2144974 28 100.0 32 ............................ TTTCACACGATAAGGGTTTTTAATATGCAATA 2145034 28 100.0 32 ............................ TTCTGATAATCTTCGTAACTTTCCGAATTATA 2145094 28 100.0 32 ............................ AAATGCCCTATAAAAAAGTGGGTTAAACTGCG 2145154 28 100.0 32 ............................ TCAGGCTTAGATAAGTCAAGGGGAGTATCATA 2145214 28 100.0 32 ............................ TTCAGTAACAGCGCGATGAGTTGCTAATACAC 2145274 28 100.0 32 ............................ TTGCCCTGATGTTTCTTTTTAAGTTTGAACCC 2145334 28 100.0 32 ............................ GCCTTGCATATTTGCAATCGCGTTAGATATCA 2145394 28 100.0 32 ............................ AAAGAGCTGCCACAGTATCGTAAGACGCGGAA 2145454 28 100.0 33 ............................ TGATGTAGTCGGTTAGGTGCTTGAGTGACAAAT 2145515 28 100.0 32 ............................ TGAAGCCAAGCGCACTGCAACGATTAACGATA 2145575 28 100.0 32 ............................ AATAGCTGAAGTAATATTGTAACTATATGTAT 2145635 28 100.0 32 ............................ TGATAAAGTTAAAAACCTTGAGCTACTTGGCA 2145695 28 100.0 32 ............................ ATTGATTAGTAGCGCACGTTTTGAAGCGTACA 2145755 28 100.0 32 ............................ TGTTAATTGAGATATTGCAAGAGGTATAGCAG 2145815 28 100.0 32 ............................ AAGAAAACTACGAGCTGCTATGCAAGCTATAT 2145875 28 100.0 32 ............................ AAAATGGCAATATGCTAAGAACGTCTATCAAT 2145935 28 100.0 32 ............................ TAAGAATTTGTTGTTTCCATCTATCACAAAGC 2145995 28 100.0 32 ............................ AAACCACCTACCACGCCACCGATGACCGTTCC 2146055 28 100.0 32 ............................ GTTTGTTTTTGCAGTTGCAACACCTGTGTTGA 2146115 28 100.0 32 ............................ AGCCGCGATACCCATGCGATTGCCGTAGTCTT 2146175 28 100.0 32 ............................ AAGACGCAGGGCTTTACTCAACAAGGAGTTAA 2146235 28 100.0 32 ............................ TTTTGGGTTTAACCGCAAGGAATATTAACATG 2146295 28 100.0 32 ............................ AGATGTTTGAAGTTCCCAAGTGATAGTTGCTT 2146355 28 100.0 32 ............................ CATTCATCATGAGCTTACCGGCGTCAAACATA 2146415 28 100.0 32 ............................ TGTCTCGGTTTCGATAACCACGCGTGTTGTCT 2146475 28 100.0 32 ............................ TTTATCGGTAGTGAGAATAACGATGCGGATGT 2146535 28 100.0 32 ............................ AATACACAGAAGCCGATATCGACCAGATGAAC 2146595 28 100.0 32 ............................ AAGCCTATCCAGTATTTACTGGGCATAACTGT 2146655 28 100.0 32 ............................ TGTTGCCGCATTGATGATATTAACTTGCATAC 2146715 28 100.0 32 ............................ ACTGTTATCTGACGTGTAATGGCTTGGGTGGT 2146775 28 100.0 32 ............................ AGCACACATCAAAGACAACCGTATCAATGCGC 2146835 28 100.0 32 ............................ TACCGTATTTGATGGCGCGTGCGGCAGCGGTC 2146895 28 100.0 32 ............................ ACTTTGCTCTATCTGTGTTTTATCGCTCAAGC 2146955 28 100.0 32 ............................ GTGAGTATCTTTTAACCAAAGAACAGTCTATT 2147015 28 100.0 32 ............................ ATCTACATCAACACCGCCATCTTTTAACTCGC 2147075 28 100.0 32 ............................ TGCATGCGCCAAACCGCCATTGATTGCGGAAT 2147135 28 100.0 32 ............................ ATAGGCGATTTCCTTATTCTTGGTTACCGAAA 2147195 28 100.0 32 ............................ TCTCTAACCTCTTTCCCCAGAATTTCCCACAT 2147255 28 100.0 32 ............................ TTCAAATTCGCTTTCAAGCTCGACTAATCGAG 2147315 28 100.0 32 ............................ TTGCCCACTTTCCCCATTCTTCGATTTTGTTG 2147375 28 100.0 32 ............................ TAGCATTTGCATTTCATGGGCGTGGATTTCAG 2147435 28 100.0 32 ............................ AGTTTGTTATTAAACTGGATTCTATGCCACTC 2147495 28 100.0 32 ............................ GTAACGCGATTAAAATGCTACAGCGTGCTGTA 2147555 28 100.0 32 ............................ TTTATCGTCTATGTCACTATGCGCGCCGTGAA 2147615 28 100.0 32 ............................ TTTTAATGCAGTAACGACACTTGTAGCGACAT 2147675 28 100.0 32 ............................ AAGCCGATTTTTTCAGACAATTCGGCTGCGCT 2147735 28 100.0 32 ............................ TTCAAATCCACACCCTACACATCGTGCTTCAT 2147795 28 100.0 32 ............................ AAAAATTTAGCAGTTTTGCCGCGGCCGTTGGC 2147855 28 100.0 32 ............................ AATAGTAAATAAAACGGCAAAATGCCAATTAG 2147915 28 100.0 32 ............................ ATAGTACACTATCAGCCGTCAGTGGGGTCACA 2147975 28 100.0 32 ............................ ATTCGTACTTAAAACCAAGTTTAGAGCGTAAC 2148035 28 100.0 32 ............................ ACAAACATAGTGCCCGTTATCAGTGATACGGT 2148095 28 100.0 32 ............................ CAATTCCTGGGAAGGCATTTGGTACGGCTATC 2148155 28 100.0 33 ............................ CAAAATGGTTTAATACCAAATTGGTATCAATTC 2148216 28 100.0 32 ............................ AAATGCCGCATCGTTTCCATGAGTTTCAAGCT 2148276 28 100.0 32 ............................ TATCGGCCAAACAAAAAGCAGCGCTTAAAAAA 2148336 28 96.4 32 .............C.............. TAGCTTATTAAAGGTGATAATATCGTCAACCT 2148396 28 96.4 32 .............C.............. GTTTTATTGAATTGCATCTGCACCATTTCGCC 2148456 28 96.4 32 .............C.............. TTGTCTGCTTGTAGCTTTTCGATAGCTACCGC 2148516 28 96.4 32 .............C.............. TTTGCCAAAGAACATCGGTCTGTCAAGGTTTT 2148576 28 96.4 32 .............C.............. TACGCATGAAAGACCTACTAAAAGACATTGCA 2148636 28 96.4 32 .............C.............. AAAACTTTACGGATAGTGCAAATGCAGCCAGT 2148696 28 96.4 32 .............C.............. GACAACCAGGCTGATTGACTGCCCAAATCGTC 2148756 28 96.4 32 .............C.............. TTTATCGACAATGGCAAGGTGATTGATTCGGA 2148816 28 96.4 33 .............C.............. CATTAAAAAAGCCCTAGCGGTTAGGCTAAGGCT 2148877 28 96.4 32 .............C.............. GAAATCCTTTACCCTGAACTTATCCCTGTTGA 2148937 28 92.9 0 .............C.............C | ========== ====== ====== ====== ============================ ================================= ================== 71 28 99.4 32 ATTCACCGCCACATAGGCGGCTTAGAAA # Left flank : CTTTCTTTCCTGCGTCATAGCCTTTGTACTTAGCGGTATCTGTGTTCTTAACGCTTTGAGCATCGATGATGATAAAACTGGTTTTACCCTTGCGTTTGTCCTTCTTTCGCGCTTTTTTGACCAATTTTTTTTAAGGCTTGATGAAGAATGCTGTTGCCTTCTTCATCAAGCTCGCTCCATTTCTGAAAGTAGGCGTGGACGGTGCGCCATTTGGGAAAGTCATGGGGCAGCTGTCGCCATTGGCAACCTGTTCTTAGTACATACAATAACCCACAAAATACGTCGTAAAGGTCAACCGTTCTTGGTTTGGTCTTCTTCCTTGCACTTTCTAAAATAGGTAGTATGTGCTCAAATTGTTTTCGGCTAATGTCGCTTGGATAGGCTTTTCTCATGGTGATTGATTCGGTTATTAATTGATTATGTAGCTTATCCTAGCATATTTTTTAATCGTGAACAGGTTCTTAGAAAAGCTTTTTTACTTGCTTCATCAAATAAAACTT # Right flank : CCTGTTCACAATCTTTTCAATAACAAAGCGATGAAAGCAAGATTGGTAAATTGAAGGCTCGAATTTAAATGACGCTCACAGTTTTTCCATAAGCGTCTATTTTTCTCAAGCCAAGCAAACGAACGTTCTACAACCCATCGCTTTGGTATGACTTTAAACGTGTGCAATTCATCTCTTTTGGCAACTTCTGTGGTAACGGTTTCGCCTAAAATAGATTTAACACTATTAGCAAATGGCTCACCTCGATAACCGCCATCAACCATCACATTTTTTACGCGGCTTAATCGTTTAGCATGTTGACGAAGTAACGTTGTAGCACCCTCACGGTCGGTGATATTGGCAGTGGTAATACAGATAGCATGCGGCAAGCCTTGGCTGTCTACTGCAATATGGCGCTTAATCCCTGATACTTTCTTTCCTGCGTCATAGCCTTTGTACTTAGCGGTATCTGTGTTCTTAACGCTTTGAGCATCGATGATGATAAAACTGGTTTTACCCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2149873-2152964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXO010000002.1 Moraxella osloensis strain FDAARGOS_1129 000000F_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2149873 28 100.0 32 ............................ TACTTGAGTAATGGCGGTATCGTATGCTCTTT 2149933 28 100.0 32 ............................ ATAAAAAGAAAACCATCACATAACCCAAGCCA 2149993 28 100.0 32 ............................ ATCAAGTTTTGTTGACATGGCAGACTGGTTGC 2150053 28 100.0 33 ............................ ACACACGAAAGGCTACGCTACCATTTTGGTTTC 2150114 28 100.0 32 ............................ AGTAGCAGCAAGTCAAAACCAAGACAAAGCAA 2150174 28 100.0 32 ............................ GTCAATCACATTGGCGCGGCTGAACGTGTAAA 2150234 28 100.0 32 ............................ ACCACCCAAACAATTTTGACGCTCGATGTTAT 2150294 28 100.0 32 ............................ TGTCTGTGTTTCTCATTTGCGTAAACTGGCTT 2150354 28 100.0 32 ............................ GTCAATCACATTGGCGCGGCTGAACGTGTAAA 2150414 28 100.0 32 ............................ ATTCCATTTCTATATGTCACTAGCGGTTTAGT 2150474 28 100.0 32 ............................ ATCGCTATTGATTTCGGCAAACAAGTCGTCAA 2150534 28 100.0 32 ............................ GTCATATCAACCGCGCCTTTGGTGCGCTCGAC 2150594 28 100.0 32 ............................ AGCTTTGGGTGCTGATGCAGCGTTTGCACTAA 2150654 28 100.0 32 ............................ TGAGCAAAAACAAATGCTACAGCAAATGTGGC 2150714 28 100.0 32 ............................ AACGCGCAAAATATTTATTGTGCCGACTAACA 2150774 28 100.0 32 ............................ AATCACCGGCATACGTTGTGTGATAGATCGCA 2150834 28 100.0 32 ............................ GTAACCCAAAAACACCAAGCAAAGCCGATGGT 2150894 28 100.0 32 ............................ TAACGGCAACAGCGGCGACAATGGGTTTGTTA 2150954 28 100.0 33 ............................ ATTCAATTTTACCATTCTCACCAAACCATTTTT 2151015 28 100.0 32 ............................ GCATTGCTAAGTTCGATAGATTGCGGCATATA 2151075 28 100.0 32 ............................ ATTAATTTGCTGCACGGTTAGTACATTTTCAA 2151135 28 100.0 32 ............................ TACTTGTTCAGTGGTGAGCCTAGTTGTCATGG 2151195 28 100.0 32 ............................ GTCTGTGCCGTGGTCTCGCTACTATCAATGGA 2151255 28 96.4 32 .............T.............. CATTAGCGGTTAATCACAAGTTTCGGCCAAAC 2151315 28 96.4 32 .............T.............. TGAATATTGACGCTGTACGCGCTTGGCACTGG 2151375 28 96.4 32 .............T.............. ATGAACTTAGTTACGCCAACTTTGGAACGATG 2151435 28 96.4 32 .............T.............. TATTAGACGCTAACGCAATAAACGGTAAAGAT 2151495 28 96.4 32 .............T.............. ACATACTGCTCAAACACTTGCGGCTCAAAAGG 2151555 28 96.4 33 .............T.............. ATAGATAACCATCTACAGCTTGAGTTTTAACTA 2151616 28 96.4 32 .............T.............. AACAAATCATCAAGCGCGTTATTAATGACATC 2151676 28 96.4 32 .............T.............. TTGCTTTGTGCTATGCACCAAATGCCACATCG 2151736 28 96.4 32 .............T.............. AGTCCTAGACTCAGCAGAAAACCCACTGCAAG 2151796 28 96.4 32 .............T.............. TCAAAGCGTGACAAACTGGTCGAAACGTGGGA 2151856 28 96.4 32 .............T.............. ATCTTCATTCGGCAATCTCTCATCAACCGATA 2151916 28 96.4 32 .............T.............. AAAAAGAGTCTAAACGCCTTGAGCCGCTAGGC 2151976 28 96.4 32 .............T.............. TTTGCTTATTATTTCGCTGTCCTGTAATGCGT 2152036 28 92.9 33 .....T.......T.............. GGCTTGGGAAACGCCCTGTGCGCTCGCATAGGC 2152097 28 96.4 32 .............T.............. TTTATGAGTACATGCCTAGACCTAAAGTTTGT 2152157 28 92.9 32 .............T...T.......... AAATACCGCGCGTCCACGAGATATCCCCGCAA 2152217 28 100.0 32 ............................ AGTCTTGCAAGCTTAGATTTGGCGCAAATGCC 2152277 28 100.0 32 ............................ ACTGTTAGCGCGTCCTGCAAGCACTTCGTCCG 2152337 28 100.0 32 ............................ TTTGTCCAATCAAAATTTTGGTCACAGATAAC 2152397 28 100.0 32 ............................ TGCATTGCGATAGGCTTTATACACCCCGACAT 2152457 28 100.0 32 ............................ ACAACCGGCAACGCTTCTAATTTAGCGTTTGA 2152517 28 100.0 32 ............................ TTGCCGAAAGATGCTGCAGGGAATATCAAGGA 2152577 28 100.0 32 ............................ TTGAGATAGTCTAAATTGATGATATTTTTTAA 2152637 28 100.0 32 ............................ AAAAGAGCAACCAAAGGAGGAAATCGATGCTA 2152697 28 92.9 32 C...C....................... AATGGCGAAATTCAACCTAGACGACTGCAAGT 2152757 28 100.0 32 ............................ GCTAAACGCTGAAGCTAAAAAGCAATTAAGCA 2152817 28 96.4 32 .............T.............. ACGGCAGCAATGGTGTCGCATCCTTTCTAGCA 2152877 28 92.9 32 C............T.............. TACTAGCTCAAGTTTGCGGTTATGAGGTAGGC 2152937 28 82.1 0 C.....................G..TCT | ========== ====== ====== ====== ============================ ================================= ================== 52 28 98.1 32 ATTCACCGCCACACAGGCGGCTTAGAAA # Left flank : CTTTCTTTCCTGCGTCATAGCCTTTGTACTTAGCGGTATCTGTGTTCTTAACGCTTTGAGCATCGATGATGATAAAACTGGTTTTACCCTTGCGTTTGTCCTTCTTTCGCGCTTTTTTGACCAATTTTTTTTAAGGCTTGATGAAGAATGCTGTTGCCTTCTTCATCAAGCTCGCTCCATTTCTGAAAGTAGGCGTGGACGGTGCGCCATTTGGGAAAGTCATGGGGCAGCTGTCGCCATTGGCAACCTGTTCTTAGTACATACAATAACCCACAAAATACGTCGTAAAGGTCAACCGTTCTTGGTTTGGTCTTCTTCCTTGCACTTTCTAAAATAGGTAGTATGTGCTCAAATTGTTTTCGGCTAATGTCGCTTGGATAGGCTTTTCTCATGGTGATTGATTCGGTTATTAATTGATTATGTAGCTTATCCTAGCATATTTTTTAATCGTGAACAGGTTCTTAGAAAACTAGAACAGCTTACTTTGGCTTGGATATTGC # Right flank : TTAATTAGTAAAACAGTGAAGTTTATTTATTTTTACTAAAGTGACCAAAAACAAGTGGGTGTGAAATTAAAAGTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCATTCAATTTCTGTAGTAAAAAAGGTGCCCAAAATTACAAAAGTGGTCAACATTTCAAATCTCGATAAACCACCCAAATCCTTGATTTTACTACAATAAAAAAGCCCCAATCAATCGACTGGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATATGCCTAAAAGGGTCTAACAATCTACTTGCGTAAGTAGGAGTGCCATTTTACCAAAAAATTTTGCTTTTGCAAGTGGTTTTAATTCTTCGCTTCAATTTTTATTGCGCCATCTTCAGCTAAGTTTTCGTTAAGGTTACGTTGTTTTAATACACTTAGCCACTCGGATATACTTCATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //