Array 1 1683091-1681411 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084315.1 Bifidobacterium animalis subsp. lactis strain 19-D-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1683090 29 100.0 33 ............................. CAGCTCGCCCGCATGGAGCAGTTCAGGACCTAG 1683028 29 93.1 32 TC........................... AGCTTGTAGTGCGAGACGTGGTCGGCGTCCGT 1682967 29 100.0 33 ............................. TCACCGGCGGCACCCCGCCTGCCCAAGCACAGG 1682905 29 100.0 32 ............................. GGGCCGTGCACCTCGTATACGGGATATGAGCG 1682844 29 100.0 32 ............................. GGAGGTGCATGAATTGAACGCAGAATAACGAC 1682783 29 100.0 32 ............................. GTGTACCGCCAGTCGTATCTCAGATGCCGCCA 1682722 29 100.0 32 ............................. GCCTCGACCGCATTGGCCAACGACAGCGCCAC 1682661 29 100.0 32 ............................. TACCATGACCCCATCACGCTCGGCATGATGCA 1682600 29 100.0 33 ............................. AAGGCCGACATCGCCCTCACCCCCGGTGTCTAC 1682538 29 100.0 32 ............................. ACCGACCCGAACCTGTGGGCACCCGGCAAGAC 1682477 29 100.0 32 ............................. AGATCCTTGGACAGGTTCGGGGTCTGGTTCGG 1682416 29 100.0 32 ............................. GCAGACATCCGGTCGAAAAGAATCCCGGAAGT 1682355 29 100.0 32 ............................. CTGACAGCGGCGGACCTCAGGGACCAACTCCA 1682294 29 100.0 32 ............................. GTGGAAGGAACATATGAACAGCATCCGAACCT 1682233 29 100.0 32 ............................. TGCACAACGAAACCAACACCGAACTGATACTT 1682172 29 100.0 32 ............................. ACCCACGGCGGCAGTGACGATAACGGATACTG 1682111 29 100.0 32 ............................. AGGTAGGTGCCCGGCTTGAGTTCGATGACGCC 1682050 29 100.0 32 ............................. GTGGGCCAAACGTGGGCGATGAGGGACTCGAA 1681989 29 100.0 32 ............................. GCTGGGTGACGAGCGACGTGCTGCCGTCCATC 1681928 29 100.0 32 ............................. AGGAGCGTGACCGTGTACTTGCCGTCATCACC 1681867 29 93.1 32 ........T.................T.. TACACCGAGATAACGCAGGCCGCCGGCAATTT 1681806 29 93.1 32 ...........G....T............ CCGGCCGCCCCGGAGGTGGCGCGGAAGATACG 1681745 29 93.1 32 ......T.........T............ ACGGCCGACAAGATCAGCGGACGACCCGTGAC 1681684 29 93.1 32 ..............TA............. GCCTACGGCATCCCACCCGAACTACTCGGCAT 1681623 29 96.6 32 ................T............ GATGCGCAGTTGCAGGCGCTCGTGGCGTCAGC 1681562 29 89.7 32 .......T..T...............T.. GACAACAACGCCTGCAAGAGGCCGGACTGAAT 1681501 29 89.7 32 A......A......T.............. CAGGCCGGGTGCCTCCATCCACTGCAAAACGG G [1681493] 1681439 29 89.7 0 ........T...G.............T.. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.5 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CCTTGATGTGTTCCCCGCAAGCGCGGGGATGATCCCTGTCATTGGGCAAGGGGCCGGACGGCAAGTACGTGTTCCCCGCAAGCGCGGGGATGATCCCGGGTGCGCAGCATCGTCGCCGTCATCGTCACCAGTGTTCCCCGCAAGCGCGGGGATGATCCCGCGTTGCCCTCGGCGGCGGTGATATAGTAGTGGTGTTCCCCGCAAGCGCGGGGATGATCCCGGTGAGCTGTGAGCCCGAGGAGGATTGACCGTCATGTCCGACCTGTTCATGATCATCATTGCCATTGTCTCTCTCATCGCAGCCCCTGTTGGTATCGTGATTGCCGTTCACCTCATCACCGCCGTGGTGTCGTCTGAATTGAAATCCCAGCGCGGTGAACATCCGGATACCTATCGCACGGTCATGTGGTGTGTCATCTGGGTCGCATCCGCCGTCGTCATCGCCGTCGCCGTCGGCATTGCCTCCACCCTGTGAACCTGTCCGTCCCTATACGGCAATA # Right flank : TGACTAGTGTATTTTGTCAAATCGGCGTTTTGGCTTGGGTACCGGACTGCGTTGCCGCTGTCTCGATTATGTTGATTATGCCATGAGTATGTTGATTATGCCATGAGGTCTCTAGTTCTTACTGGTGTCGGCGCATGTTTGTGCCATTCGGTCTTGACGCATTCATTCCAGTATCAGGCCAGATAGTCGTTGAGGTCGTTGATGAACTCGTCGATGCTGTCGTCTTGGTGGTTCCGGTTGTGGTAGGAGAGGGATGAATTTTGTAGGACGAGTATCAGGGTATTGCTCCGATTTTGGGGATTGAAACATCCAAGGTGATGCCGAGGTAGTGGCTAGATGTAATTCCAATTATCCATCTGTTGTTAGGTCTAACGATGGGGAGAATAGGAGCGACCATTGTTTGTATTACTACAATGATTTGGGTCCACAAGGAATACAGAGATGGCTTTATCTCAGGAAGCATTGTGAGCAGGGTATGAATGCTCTGTACTATCTAGCCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1686702-1683371 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084315.1 Bifidobacterium animalis subsp. lactis strain 19-D-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1686701 29 100.0 32 ............................. ATCTCTCGGCAATGTCGTAATTAGATATCAGT 1686640 29 100.0 32 ............................. TATCGTGACCCCATCACGCTCGGCATGATGCA 1686579 29 100.0 34 ............................. ATGGCCGTCCGTGTCCATCGTGTCATACGTGTAC 1686516 29 100.0 32 ............................. CCGCAATGAAACTGCTACGGCAAATCGGAGAA 1686455 29 100.0 32 ............................. CGCTGACCGCATAATCCCCGCTTTCGTCTATG 1686394 29 100.0 32 ............................. TCACTTCAATAATCGAAAACGTTTGTGAAATA 1686333 29 100.0 32 ............................. ACGTCGCTTGGCACGCTCGCCGTGTCCAAGGA 1686272 29 100.0 32 ............................. GCGTCGTCGCCCAATGTGACGCTGCCGCGTGT 1686211 29 100.0 32 ............................. TTCTGCGTCGCCAAGAACTGCAAGTCTTCGGC 1686150 29 100.0 32 ............................. GCGTATGCCCAGGCCAATGAGTCGGCGGCGTT 1686089 29 100.0 31 ............................. GCAGCGCCCACTCGTCGATCTGGTTCCCACG 1686029 29 100.0 32 ............................. TGCCCGAGGCGGCCACCGGCACGGTATGGTCC 1685968 29 100.0 32 ............................. GGGCCATTATCCGCGTAATGCGATGGGTGATT 1685907 29 100.0 32 ............................. AAAGTAAGCGAGGGAATAACATACATCAAAAA 1685846 29 100.0 32 ............................. TGAGCGTGGACTGGGCGGATTATTTGTCCGGC 1685785 29 100.0 32 ............................. GCGTCCAGTGCGCGACGGAACATGCCGACGAA 1685724 29 100.0 32 ............................. GCCTCGCATGGTGGGAGGGCAAGCCGGTCGAA 1685663 29 100.0 32 ............................. GCCTCGCATGGTGGGAGGGCAAGCCGGTCGAA 1685602 29 100.0 32 ............................. GCCTCGCATGGTGGGAGGGCAAGCCGGTCGAA 1685541 29 100.0 32 ............................. ATTTGGAACTTTTTCAAATGCTTGTATCGACT 1685480 29 100.0 32 ............................. GTGTTCGAGAAGGGGCCTGCGGTCTCGGTCAT 1685419 29 100.0 32 ............................. TGACCGGGTTCGCCGAACTGCCGCACACGCCG 1685358 29 100.0 33 ............................. GAGACAGACACCGAACTGATACTCCCAGTGGGC 1685296 29 100.0 32 ............................. GCCAACACCTCAAAGAATACGTCATCGCACAC 1685235 29 100.0 32 ............................. AACATTGGAGAGAAGCCAAGCAAGCCGAAACA 1685174 29 96.6 32 ............................A CACGGCCACACGCATCGATTTCACGCGTGGGC 1685113 29 100.0 32 ............................. GCCAGCATGGTCGCCCAGTCCGTGCCATGCCC 1685052 29 100.0 32 ............................. ATCTTCTTGACGTCCCCAGTACCGGCATAATC 1684991 29 100.0 33 ............................. GCGTTGCCTTCGGCTGCGGTGATGTAGTAGTGC 1684929 29 96.6 32 .G........................... TGGTCGGAGAGGATCTGGTCGGCGTCGGCGGC 1684868 29 100.0 32 ............................. TGCCAGCCCGTCAAACGAAACGGCCGATTCAA 1684807 29 100.0 32 ............................. GTGATCATCTCGTTCCAGATCTGGTTCTTCAC 1684746 29 100.0 33 ............................. TCCACATGTGCGCCTCCTCGTGGTGCGGTCGCG 1684684 29 100.0 31 ............................. TCGGCCTGGAGTTCGCCGGCGCGCTCTGGGA 1684624 29 100.0 32 ............................. GTCGACACCACCGGAAGCCAGCTGACCATGCT 1684563 29 100.0 32 ............................. AACGGGTTGACCATAGGCGACCTGACGAACAC 1684502 29 96.6 35 ............................A ACCAAACAAAACCAAACAAAACAACAAACAACAAA 1684438 29 100.0 32 ............................. AATTTTGGTAAATTGGTTTTGGTTATCCCCTA 1684377 29 100.0 32 ............................. AGTTGACGTTAACACCGATGAGGCCAACCAGA 1684316 29 100.0 32 ............................. GCCGCTGTGATTGCCGCGCTTCGCGATGCGTC 1684255 29 100.0 32 ............................. AGCATGTCGTAGCTGACCGGCTGAACCTGTCC 1684194 29 100.0 32 ............................. GTGTTGCCGATGGCGTATTGCGCATAGTCCTC 1684133 29 100.0 33 ............................. TATTGGGACAATCAGGAGGCACCGACATGGCAG 1684071 29 100.0 32 ............................. CGGCCGCATCCGGCATGCAGCCGATCCCGACT 1684010 29 100.0 32 ............................. GCGACGGCGCGCACGCCTCAAGTCGCAGCAGC 1683949 29 96.6 33 ..........................T.. AAGGCAAACCAATTACTGGGACAATCATCAGGA 1683887 29 100.0 32 ............................. GTGGCGGTGAAACGGTCGCCTTCCTTCGGCTC 1683826 29 93.1 32 ..........C.................T TGCAGGTGTGATGGATTGACGCATAGGCTGTT 1683765 28 93.1 32 ..........C.........-........ GCCGAACCGCCCTTGCGGGTCTGCATGCTTTG 1683705 29 96.6 32 ..........C.................. TCAAGATTGGCCCGATCACCACCACCCACATA 1683644 29 96.6 32 ..........C.................. AGGTTCGTGTTGCCGTCCGGATTGTCCTTGAT 1683583 29 96.6 32 ..........C.................. TGTCATTGGGCAAGGGGCCGGACGGCAAGTAC 1683522 29 96.6 33 ..........C.................. GGGTGCGCAGCATCGTCGCCGTCATCGTCACCA 1683460 29 96.6 32 ..........C.................. GCGTTGCCCTCGGCGGCGGTGATATAGTAGTG 1683399 29 96.6 0 ..........C.................. | ========== ====== ====== ====== ============================= =================================== ================== 55 29 99.1 32 GTGTTCCCCGTAAGCGCGGGGATGATCCC # Left flank : CACTAGGGGACGAGTGGAATGAGGAACCATGGTAGTCATCGTTCTGACGGCATGCCCTGCAGGATTGCGCGGTGACGTGAGCAGATGGTTATTGGAGGTATCTCCCGGCGTCTTTGTGGGACGTATCAGTGCTCGCGTACGTGAGAAGTTGTGGGAGCGCATCGTCGACACCCTCAAAGACGGCAGGGCCATTATGGTATTCTCAGCTAGGAACGAGCAGCACCTTGATTTTCGCGTATTCAGATCCGATTGGCAGCCAGTGGATTGCGACGGATTGCAATTGATCAAGCATCCAAACGAGGAGAAACGCGAGACTTACGCGGGGACGAAGCGGCATGGGTGGAGCAACGCTGCCAAATACAGGCGTGCACGCAAATACCGTGGATAACAGCCGTGCGTTTCGGCAAGTGTTTCTTCTTTTAGACATTGTAGAAAAGAGAAGTGAATAAAAACAGACTTCCTTCTTTTCTGATATGTTGAGATTATTGGGATTTCTTAGT # Right flank : GGTGAGCTGTGAGCCCGAGGAGGATTGACCGTCATGTCCGACCTGTTCATGATCATCATTGCCATTGTCTCTCTCATCGCAGCCCCTGTTGGTATCGTGATTGCCGTTCACCTCATCACCGCCGTGGTGTCGTCTGAATTGAAATCCCAGCGCGGTGAACATCCGGATACCTATCGCACGGTCATGTGGTGTGTCATCTGGGTCGCATCCGCCGTCGTCATCGCCGTCGCCGTCGGCATTGCCTCCACCCTGTGAACCTGTCCGTCCCTATACGGCAATAGTGTTCCCCGCAAGCGCGGGGATGATCCCCAGCTCGCCCGCATGGAGCAGTTCAGGACCTAGTCGTTCCCCGCAAGCGCGGGGATGATCCCAGCTTGTAGTGCGAGACGTGGTCGGCGTCCGTGTGTTCCCCGCAAGCGCGGGGATGATCCCTCACCGGCGGCACCCCGCCTGCCCAAGCACAGGGTGTTCCCCGCAAGCGCGGGGATGATCCCGGGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //