Array 1 901030-896267 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064780.1 Xanthomonas oryzae pv. oryzae strain DY89031(J18) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 901029 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGG 900964 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 900897 31 100.0 35 ............................... AAATGATTGAGCATCAAACATCTATGTTTGATAGG 900831 31 100.0 37 ............................... GCCGTCACCTTTGGTGTAGCTATGCGGTGAAACGACG 900763 31 100.0 35 ............................... ATGATCGAACGGCCTACCGGCGCGCCCTCGCCTAC 900697 31 100.0 34 ............................... CTCAGGGCTATCGCCTGTCAGGTGCAATCAAAAC 900632 31 100.0 35 ............................... TCAGACACGGACACAGAGTCATTGAACGTCATGTA 900566 31 100.0 34 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAGC 900501 31 100.0 35 ............................... GGGGTTCCTCGGCAAGGTCGGCAGCTGGATCGGCG 900435 31 100.0 34 ............................... CACACGAGCGCGTCGAAGGCGGCGTTGTGCGCGA 900370 31 100.0 34 ............................... GAGGACCGGCGTGCAGCATCGGTCAACATTGGCG 900305 31 100.0 35 ............................... TCGATCCGGCCGTCGGCGACATCGGCTTGGCGACC 900239 31 100.0 34 ............................... TTTGCAAATGAATCATATTGATCATCAGTCAGGA 900174 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 900109 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 900044 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 899978 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 899912 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 899845 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 899781 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 899715 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 899650 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 899584 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 899519 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 899452 31 100.0 36 ............................... TCCGGGTTCAAGAGTTTGTCTACAAGTACCGGAAGG 899385 31 100.0 34 ............................... CGTATCAGCCTGGTGATTACGAGCTTGATATTGA 899320 31 100.0 34 ............................... AGTAGCCAGTGAAGTCTCCCAGATGATCCCACAA 899255 31 100.0 34 ............................... CGATGATGTTGTACAAGAATGGAATATCCTTAGC 899190 31 100.0 33 ............................... ATACCACATGAGTCTGTATTAGATGCAATGGAG 899126 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 899061 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 898995 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 898929 31 100.0 36 ............................... AATGACAGCGCATCTGTGGCGGAGAATGCCCCTATG 898862 31 100.0 37 ............................... AAGCTTGATCTTATTGGCATACACCCACCGCGGGAAC 898794 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 898729 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 898664 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 898597 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 898531 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 898464 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 898398 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 898331 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 898263 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 898198 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 898133 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 898068 31 100.0 34 ............................... GCGCAAAACGATAGCGCCAAGGTCGAAATCCCGG 898003 31 100.0 35 ............................... GCTGCTCGCCGAAAGCAAGCGTCGCTAATAGGAAC 897937 31 100.0 34 ............................... GTTCGTACGCGCCACGGCGTTCGGAACAAACTCT 897872 31 100.0 35 ............................... TTCGGCTAATGGTGGTGAGGGCAGGGCGGCGCTTC 897806 31 100.0 35 ............................... GAGGCGCAATTCGACAATGGGCGTATGCAGGACTG 897740 31 100.0 35 ............................... GACAACTCCACCACGATCACTGGACAAGCCGGCCG 897674 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 897609 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 897544 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 897478 31 100.0 34 ............................... CTGGCGCAGCACGCACGGTGGACAAGAGGTGGGC 897413 31 100.0 36 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTAAG 897346 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 897280 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 897213 31 100.0 33 ............................... GCCATCGATGCAGCAGGCCAGGACGTAGCGCCG 897149 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 897083 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 897018 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 896953 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 896887 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 896821 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 896757 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 896690 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 896625 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 896559 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 896494 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 896427 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 896362 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCAGCGCAGGCTGGCC 896297 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 73 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //