Array 1 108055-106151 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYER01000003.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_2618 NODE_3_length_345621_cov_0.317826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108054 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 107993 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107932 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107871 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107810 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107749 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107688 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107626 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107565 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107504 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107443 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107382 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107321 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107260 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107199 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107138 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107077 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107016 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106955 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106894 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106832 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106729 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106668 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106607 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106546 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106485 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106424 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106363 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106302 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106241 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106180 29 96.6 0 A............................ | A [106153] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125679-124186 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYER01000003.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_2618 NODE_3_length_345621_cov_0.317826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125678 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125617 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125556 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125495 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125434 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125373 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125312 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125251 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125190 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125129 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125068 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125007 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124946 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124885 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124824 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124763 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124701 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124640 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124579 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124518 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124457 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124396 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124335 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124274 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124213 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //