Array 1 126992-126637 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUQ02000003.1 Streptomyces sp. MNU77 contig3_MNU77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================= ================== 126991 37 83.8 37 ..C..CCC.C.C......................... TCCTTGGGGTCGGAGAGCCACTTCATGACCTCGCGGA 126917 37 94.6 61 ...........C...T..................... TGCAGGTATGACGACCAGGAGGCGGCTTCCAGGGCGAGGTGGCGGTCGCCCTCCGGCGGCG 126819 37 100.0 38 ..................................... GCCATCGAGGACGTCAGCACCACAGACGATCCGCGCGC 126744 35 89.2 34 ..........--....T....T............... TGGGAGGTCCGCGGGTGGGGGCGCCACGGCGCTA 126675 37 70.3 0 AG.TG.CGGT.G....T....A............... | A,T [126654,126660] ========== ====== ====== ====== ===================================== ============================================================= ================== 5 37 87.6 43 GTGGCGGTCGCTCCCCGGGGCGGCCGAGGATCGCAAC # Left flank : AACGCTCGGAAACCACGGACGGCAAGAACAAGGGCAAAGAGACCGAGATGGGCTCCAAGCACGTCGTGCCCTACGCCCTCTACCGCGGCACCGGACACTTCAGCGCCCCGCTCGCCCGCCGGACCGGCGTCACCACCGAAGACCTCTCGCTCTTCTGGCGCGCCTTCGAGATCATGCTCGAACACGACCGCGCCGCTGCCCGCGCCAACCTTGCCCTGCGCGGTTTGTGCGTCTTCACCCACGACGACGCCTTCGGCCGCGCCCCGTCCCACGAACTGTTCGAGCGGATCACCGTCAAAGCCCGTGGTGACAGCAGCGCACGCTGCTTCACCGACTATGGCACCCTCGAAATCCGTGACACCGACCTGCCGGCCGGTGTCACCCTGACCACTCTTCTCCCGCGCTCTGCCTGATGAGCGGTGGTGCCAACGCACCGGGCGGAGAGCGAGACCTCGTCCAGGCCCCGCTCTCCACCCTGGATTTCCGCCGCGCGGGTGGCG # Right flank : CGTCTGGCCCCCGTACTTCAGCGGTTCGTTGGAGCTGTGGCGGTGTTTATCGCCCATGGGGACCGGGAGACGCTCACCATGCACCGTGCTGTTGCGGCAGAGCTCCACGGCCGCGCCTGACCGGCTCGGCCGTACGGCGTGATCGCTGGACGGCGTCGCCCAGGACGTCGGCCTGCTGCCCCGCAGCGGCGCCGCACCGGCTCCCGGCGGCGGTCTCCTGCAGGTACAGCCGCTGCGCATCGCGGACCCGTCCGTCGCCGGACAGGTCGCCCGCCAGCGCACCCCGGCATGAACCGCCTGTATACGGGGCGGATATCCGCAGCTCACGACTGCATCCACCCCCGTATCCAGCGTTGCCGTCCGGAGCTCAGCAACCCTCGCCGGTGGCGGCCGCTGTGATCGCCCTCTGGACGAGACGGAGTTCCGTCTCGTCCAGCACCTCCAGCGACGCCTTGAGGTTGAGGGGCGCGGCCCCGGCCAGCGCCGTCGCGATGCGCAAG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:-1.5, 6:0.25, 7:-0.42, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCTCCCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 135345-134572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUQ02000003.1 Streptomyces sp. MNU77 contig3_MNU77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 135344 37 100.0 37 ..................................... GTCTGGTGGACGATGGCGCCGGCCCAGGGCTGTCGGA 135270 37 100.0 37 ..................................... CGCAGGGCGTAGGCGGCCTCCGCAGCGTCCCGGGCGG 135196 37 100.0 36 ..................................... AGGTGCGCGTCCTGGAGGCGGCAGAACCGCTCCCAG 135123 37 100.0 37 ..................................... CACTGACTGTTCCCCACACCTGAGTCAGGACGGCTTT 135049 37 100.0 37 ..................................... GTCGCGGCCCATCCGCCCCATCCTGGGTTCTCCGCCG 134975 37 100.0 37 ..................................... GTCTTCGCGCGCCTGCTCCAGCCAGTCCTCCTCGGCC 134901 37 100.0 36 ..................................... GCCCCGCCCGTCGCCATGGGGCTCCTGCCGACCGAG 134828 37 100.0 36 ..................................... CAACGTCTCCCCCTCATATGCAGTCACGATTACGTA 134755 37 100.0 35 ..................................... TGCATGGGCATGGCCTTGCGGGTGTCGCTGTAGGC 134683 37 100.0 38 ..................................... TCGTACGCCGTGCGCTGCTCCAGGAGCGGCTGCTGACC 134608 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 100.0 37 GTGGCGGTCGCCCTTCGGGGCGACCGAGGATCGCAAC # Left flank : CGCCCCGGACATCTGTGATGTCGACCAAGAGCAGGAGTTCGTCCTCGAGGACCTGACTCGCGAGCAGGTGCGCGACTGGAGGGTGCGCGCGATGAAGGACCACGACGTCGTCTTCGACCACATCGACCAGTACGGCGAGTCGTCGGCCCGCCGCCTGTTCAGCAACCGCTTGGTCAACGAAGCGCAGCACCTCTCCAGGCTCGGTCACCTGAACCTGGGATACTTCGCCTGGGGGCAGTCGTGAGCGGCGGCGGGGTGCCCGAACTCGTCGGGCGCGTGAGGGCCGTGGTCCTCGACACGAGGACAGGCCGCCTGGAACGCAGCGCGCGGCACACTGGGTCCACGTGCGCGACACGTGGACTCCCGACCGCTTCGGAACCGGAAGCACACACGCGACACGCGGACCGCACCGAAGCCAAATGCCCGAATCCACCGGAACTATCACTTCCAACGCGCTCCCTTTATGAAGGGCGCTAGGCTCTTTGTACTGTTCAGACAGG # Right flank : GTGGCGGTCACCGTGCCGGTTGCGGTCTTCGGTCGCCCCGGAGGGCAACCGCCACCGGTCGGCAGCACGTGCTCGGACGCGACCCGGTGGGTGTTGCGATCCTCGGTCGTTCCGGAGGACAACCGCCACGGCGCCCTTCACCCAGTCGAAGATCCCGCCCCGGGCGTTGCGATGCTCGGCCGTCCCGGAGGACGACCGCCACGCGAGTGCTGGACGCGGTCCGCGACGGTGCCCGTACGTTGCGATCCTCGGTCGCCCCGAAGACCGCCACGACGGCTCCGGCGGCGGTGACGCGGTCGGGGAGTCAGTTGCGATGCTCGGCCACCCCAGAAGGCGCCCCCAAGCCGAGGACGGCGCGGCCGGTGGCTACGTCGAGGCCGTTGCGATTCTCGGTCGTCCCGAAGGGCGACCGCCACCACGTCACCGCCGTGGGCTCTGCGATGGGGTCGCTGTTGCGATCCTCGGTCGCCCCGAAGGGGGAACGCCACCCGACGGTCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTTCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.80,-18.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3513550-3514676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUQ02000001.1 Streptomyces sp. MNU77 contig1_MNU77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3513550 29 100.0 33 ............................. TGAGGCGGCGTAGCCGGTCCCACGGCCAGCAGC 3513612 29 100.0 32 ............................. ACGCTCGGCTTCGGGACGGACGGCGGGCTCCT 3513673 29 100.0 32 ............................. GCCTTGAGGATGACGCCGAGGGCGGTGGCGAC 3513734 29 100.0 32 ............................. GGCTGGCGTCGCTGCGAGCGGCGGTGAACCGG 3513795 29 100.0 32 ............................. TACATCGTGCAGGTGGAGTTCGTCGACAAGGA 3513856 29 100.0 32 ............................. GCCTTCTTGATCGCTTTGACCATCGCGGCGGC 3513917 29 100.0 32 ............................. GCGGACGCGAGGTTGTCCAGCTCGGTGAGCCG 3513978 29 96.6 32 ............................T GTTCGGGGCCTTGCACCGTTGAGCGGTGCAAG 3514039 29 100.0 32 ............................. GCGCTCCTGGACGGGAGACCCGTCACCGGGCT 3514100 29 100.0 32 ............................. ACCAGGCGCGCGCTGCCGGAGGCTAGGCCGGA 3514161 29 100.0 32 ............................. GGTGACACGGCGGTCGAGGAGGACGGTTTCGA 3514222 29 96.6 32 ............................T CCGCGCGACGCGCCACGCGGTGCCGGTGCTGA 3514283 29 100.0 32 ............................. TCCTCCAGGACGCACGACGCCCCCGGCCGGTA 3514344 29 100.0 32 ............................. GGATGTCGGATCTTGAGGTGTGTTGGTCGCGG 3514405 29 96.6 32 ...................A......... ACCCCCACGCTCATGACATGACACGGAGTGGC 3514466 29 100.0 32 ............................. GCGGCCCAGGGGGAGATACAGGAGGCGGCCCA 3514527 27 93.1 32 ................--........... GAGTACATGACGCCGCATTGCAGCACCCATGG 3514586 29 100.0 32 ............................. GGCTGGGTCCCCGGACCCATTCCGGGAGCAGG 3514647 29 79.3 0 .....................GCCCCT.. | C [3514663] ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.0 32 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : CTACCCACCACCGGAAACCCCCCGCCCGACGCACCGACCCCCACCCACCACCTCCTCGTGGAATGCACCGACTGCGGCCGCCCCGGACCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCAAAGCCCACTCCGGCTCCGTGGACAGAGAGAACTCGCCCCACCCCGCCGACATCGCCGACGTCAAGGCACACATGAGCAACCTCCGCGACCTGCTCAAGCCCGTCTAAGTGCGACAGCGCGGCACACGTCACGGCACAGGCATACAGAAGCCACGAGCGAGCTGCACCCACCGAAACGAACGCCCCGCAGTACGGGACGATCACGACCCTTGCCTTCAGAACGCCGCCTCTGGCAGCCCGCAAAGGGCAGAATGAATCCCGACGTTTAGAGCGACGAGCAGAACCGCTCACAACCCAGGGGCAATATGTCCTTTTCTCTGAAGCTTGCCGAAAAGCACCACTCGCCTGCATAGAACCGCAGGTCACGAACT # Right flank : CGGTCGTCCGGAGTCGCCGGCATCTACAACATCTCCACCCTGGCCGCCCACCGTCGGCGCGGCTACGGCGGTGCCATCACGCTCGCGGCCCCTCCGCACGGCCCGCGAGTGAGACCACCGCATCGCGGTCCTGCAGGCATCGGGTGACGGCGAGCCCGTTCTACCGCCGCCTGGGGTTCCGCTCTTGCGGCCAGTTCACCGAACATGCCGTCAACCCCTGAACCGCCAAGGCTCCACGGACCGGCCGTCCGCCATTCCTGAATGGGCCGGTCACAGCCACTCATTGATGTCCGCTACGAGGACAGTGGCCCCTCCCAGCCTGTGATCGCGGGGCTCGGTGAACACACCGTCCGGCGGTTCCTTCCGCAGGTCACCCCGTTTGCGGGCCCCGGGCCTCGGTCCTAGTTACCTCGTTGTGTGTACGCCCCTTGCGGCCGATCATGGGCGTCGGAACCAGCAAGGAGGAACAGGATGGGGCTCATGCTCTCCCCCGGCGACTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4354204-4353630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUQ02000001.1 Streptomyces sp. MNU77 contig1_MNU77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 4354203 29 96.6 32 A............................ GCAGCCCTACCCACACCCAAGGGAGACCCATG 4354142 29 100.0 32 ............................. GCGTCCAGGGCGTCTGCGAGGAAGCGGGGGTT 4354081 29 100.0 32 ............................. GTGTGCCGGAACTGGTGCGGGTGGATGTGCGG 4354020 29 100.0 32 ............................. GTCACCGCGAGCACGCCCATCTGAGGGAGCGT 4353959 29 100.0 91 ............................. TGGACGAACGTGTACCCGCCGATGCGGCAGCTGTCGTCCTAGCGAGTGGGGGTGTTCCCTGGTCGTGAATCGGGGCGGCGTAGTTGCTCCG 4353839 29 82.8 32 ..C..........A.......C.AC.... TGCTAGAAATGCATCCTCGAAGGATGCATTCT 4353778 29 93.1 31 ..C..........A............... CGCTGGGGATCGTGCCTGTGGTGCCCTTCCG 4353718 29 86.2 32 .CC..........AC.............. GGCGACACAAAACCATCGGGCCCGACGGTGGG 4353657 28 82.8 0 ..C..................G..A-..G | ========== ====== ====== ====== ============================= =========================================================================================== ================== 9 29 93.5 39 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : CGGCACGTCGTCGGACCGGGTCACGCTCCAGTCCGACGGAGACGTCATGGTCGAGGGCGGGCGCAATTACGGAGACGAGATCATCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGTCGGCCTCAGAGGCTTCCTCACCCGCTGGCTGCTGGAAATCTCCCCGGGCGTCTTCCTAGGCTCTCCGTCCACCCGCATGCGCGACCTCCTGTGGGCCGAAGTCCGCGAGTACGCCGGCCAGGGCCGCGCCCTGCTCGCCTACCAGACGGACAACGAGCAGGGCTACACCTTCAAAACCCACGACCACTCCTGGCACCCGACCGACCACGAGGGCCTCACCCTGATCCACCGCCCGAGCATCCACGCCCGGCGGGCTGGCAGTCCGGAGAGCGCGGTGACCGACGTTCCCCAACAGGGCTGGAGCAAGGCGTCGAAACGACGGAGGTTCGGGGGCGGAAGGTAGGTGCGGCTTCGAGAGCTGGGTCAGGTCGGCGTGCACCG # Right flank : TCAGCTCGCAGAGCCCTCGAACGGGTGACAGACGTGGTTCCCGCAGGCCCGCTGGTTGCGCGCCACCACGGCGGGATGCGTCACAGACCTGTCTCGGACCTTGACGGAAGCAGGATGTAATGACCAGTGCGCCGGACTACAGCCAAGGCATCGACACCGAGCGCGCCCTTAAGTTCGCTGTGCAGCGCATTCGCGGGGACCGTGTCCAGATCGTTGAGGGGATCATCGAACCGGTGTCACCGACGTGGGACCACGAGCGCGCTGCCAAGCTCGTACGCCGCCAGATCGAGAGGCGAGTCGACGAGCTCGGGTGCGTGGAAGGGTCCGGGAATCTGGACCTGCCCGGGTCCTCGAACTGGTATGTCCCGGACATCGCCGTTGTGCCGGAGGATCTGGCCAAAGGAGGCAGCGCCCTGCTTCCCGACCAGACGCTGCTGATCGTAGAAGTGACATCCGAGTCGAACGCGGAGACGGACCGGGTCGTCAAGCGACGTAGGTAC # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.60, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4366703-4364173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUQ02000001.1 Streptomyces sp. MNU77 contig1_MNU77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4366702 29 100.0 32 ............................. ACCACCGGCCGCAGCGACTGTGACGAGTGCGG 4366641 29 100.0 32 ............................. CCGCGGTCCTGGGCCATCCCCTCGGGGTCCGT 4366580 29 100.0 32 ............................. TTCGGCGGCGACATGACCCGCCAGGTCCTCAT 4366519 29 100.0 33 ............................. GTACTTCGCGATCTGGAGTGATCAGATCGCCGG 4366457 29 100.0 32 ............................. CACGGACACCAGTACGTCGTCATCGACAGCTT 4366396 29 100.0 32 ............................. TCGTCCGGCTGCTGCATCGGGAACCTCACCGC 4366335 29 100.0 32 ............................. TCTCCGGCCCCGACGGCGGCGCAGTCCCCTTC 4366274 29 100.0 33 ............................. GTGACGGCGTGTGGCACTGGCAGGGCGGGCGCG 4366212 29 100.0 32 ............................. GGCTATCGGCATCATGCGTGCCAAGGGCGTCG 4366151 29 100.0 32 ............................. TTGAGCGCTGCGGGCTGCGCGGTGCGCCCCAT 4366090 29 100.0 32 ............................. GGCACCACGCAGATGCAGGGGATCCTCACCAC 4366029 29 100.0 32 ............................. CGTTCGATGATCTTGTCGTAGACCTCCAGGCG 4365968 29 100.0 32 ............................. GTGTCGATCCGGGTGGGGTACGGCGTGTTCGA 4365907 29 100.0 32 ............................. CTCCCCCGCCTCATCCCTACCGGCAAGTGCTT 4365846 29 100.0 32 ............................. TCCTCACGTCCCTGTGTTCGCTGCGGCACTGG 4365785 29 100.0 32 ............................. TGGGTGATGGCCGGGTCGCGGGGGTGGGAGCC 4365724 29 100.0 32 ............................. GGCACGTACGTGGTGTCGTCGAAGCCGCCGTC 4365663 29 100.0 32 ............................. GCCGCGGCGGTCGCCCTGTACGAGAACCTGCC 4365602 29 100.0 32 ............................. ACCTGGATCCGCCGCTGCCAACCCGGTCGATC 4365541 29 100.0 32 ............................. ACCACCTCCTCCGGCGCTTCAACCGCGCGCTC 4365480 29 100.0 32 ............................. AAGCTCACGCACACGGGCCCGCTCGGCGCGGA 4365419 29 100.0 32 ............................. AGCCCGCCGGGCGTTGACCCGAGCCCGGCGAC 4365358 29 100.0 32 ............................. TCGCCGCGATCTTCGGAGGGACGTCATGACCG 4365297 29 100.0 32 ............................. GAACACCTCGCACACGCCACCAGGTCGGGCTG 4365236 29 100.0 32 ............................. CTCCGCGCCTCTCTCGGCATGCAGGGCGACGG 4365175 29 100.0 32 ............................. CGTGCGAGAGCTTCCTCGCTGCCCTGCTCCAG 4365114 29 96.6 32 ..C.......................... TGTGCTCCGTCGAGCGCTGGGCCGTGCCGCTG 4365053 29 100.0 32 ............................. ACCCCGGGGACGTCGGGTGCGCCGGCTGTTGG 4364992 29 96.6 32 ..................A.......... AGCTGGTCCGCGGTGGCGCCCTCGGTCGACCC 4364931 29 100.0 32 ............................. GACGGCGTCGGCCGCGACCGTCGCGAACTCCA 4364870 29 100.0 32 ............................. CGGCCCGTCGAGTGCCAGGACCTCTCCGACGA 4364809 29 96.6 32 ............................T CGGGTGGAGAAGGACAACAAGTAGCTTCTGTC 4364748 29 100.0 32 ............................. CCCGGCTCCCTCATGAACGCCCTGCTGGAGTG 4364687 29 100.0 32 ............................. CCCGGCTCCCTCATGAACGCCCTGCTGGAGTG 4364626 29 100.0 32 ............................. TGCTCACGCTGTGACGGCAGTTGGGGTGTTGG 4364565 29 100.0 32 ............................. GTAGCCATGCCCGGCGTGCACCTCGCATCCGA 4364504 29 100.0 32 ............................. GCGGATCGGAAGCCCGAGGGAGGACTCCGCCG 4364443 29 100.0 32 ............................. AGGTCGCCCTCGATGACGTCGTCGTTCAGGTC 4364382 29 96.6 32 .........................C... CGGGCACGCTGCGGCGTCCACTTCCGCTTGCT 4364321 29 100.0 32 ............................. GTCGAACCGGGACAGCGGTTCACCTTCGACCT 4364260 29 100.0 32 ............................. TAACCGTTGTTGTCCTCGTCGAGCTCGATGTC 4364199 27 86.2 0 .................A..--...A... | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.3 32 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : TGCCCGCACCCGGAAACCCCCCGCCCGGCGCACCGACCCCCACCCACCACCTCCTCGTGGAATGCACCGACTGCGGCCGCCCCGGACCCCCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACTCCGGCTCCGTGGACAGAGAGAACTCGCCCCACCCCGCCGACATCGCCGACGTCAAAGCACACATGAGCAACCTCCGGGGCCTGCTCAAGCCCGTCTGAGTGCGACAGTGGGGCACACGTCTCGGCTCTGGCATACAGAAGCCATGAGCGAGCTGCACCCACCGAAACGAACGCCCCGCAGTACGGGACGATCACGACCCTTGCCTTCAGAACGCCGCCTCTGGCAGCCCGCAAAGGGCAGAATGAATCCCGACGTTTAGAGCGACGAGCAGAACCGCTCACAACCCAGGGGGCGATATGTCCTTTTCTTCGAAGCTTGCCGAAAAGCACCACGCGCCTGCATAGAACCGCAGGTCACGAACT # Right flank : CTGATCCGAAGGATTGCCGGATTGGTAAACCGGCGTGGTCCCTGCGCCAGCAGGGCACCCCGGCGTCAAGTAGCGTTGGATAGAGCACAGTTGGAGCTCGCGCGAAATGGCACCCGCACTACTACAGCTCCCGCCACGCCCCACACTCCGCGAGTCGACCGGCGGAGCCCGGCCACCAGGGCCACCTCCGGCTCCAGGTTGCACACCAAGCCCCGGCGCACGTCAGCAGATCACTCCCCCCTCGGTCACTCTCGGTCAAATAGGCGCACTTGCGTTCACCTTCGGCCATTGCAACCGCCGTATGGCTTCGACGATGTCCAATACGCCCATGAGCCGCGATGATCCGGAAAGCCTGTCGGCTTACGCCCACCTGTCCCCCACCTCCCGCACGGCCTGGGGCAAGCACGACCGGCAGACCGAGCAGTGGCTCCCCCTCTGGCGGCACATGGCGGACAGTGCCGCCGTGGCAGGTCGGCTCTGGGACGAGTGGCTGCCCGACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 5079661-5077436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUQ02000001.1 Streptomyces sp. MNU77 contig1_MNU77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5079660 29 100.0 32 ............................. CTCGCCGTCGCCATCGACGAGTCGGGGAACGT 5079599 29 100.0 32 ............................. GTTCCGTATCCCGGCTGGTCGCGGGCGCCGGT 5079538 29 100.0 32 ............................. GCGGACGCGAGGTTGTCCAGCTCGGTGAGCCG 5079477 29 100.0 32 ............................. ATGAAGACCCCCGGCCCCTGTGCCTGCCCCCG 5079416 29 100.0 32 ............................. GGGGTGTTACTGCTGGTCAGGTTGGGGAGGTG 5079355 29 100.0 32 ............................. CGGAACCCTGCGGCCAATAGATCCTCCACCGG 5079294 29 100.0 32 ............................. TCGGGTTAATGTCGGTGGGGTTAACCAGCTCT 5079233 29 100.0 32 ............................. CGGCGCAAGAAGCTGGCGGAGAACCTGAACCG 5079172 29 100.0 32 ............................. CTGGTGGCCGGGGGCGGCTGGCAGACGTTCAC 5079111 29 100.0 32 ............................. GAACGGAACGTCTCTAGGCAGGGGCACCGGGT 5079050 29 100.0 32 ............................. CACAGGTACGCGGCACCCGTGGCTGGGGTGAC 5078989 29 100.0 32 ............................. AGGTGCGTCGCGCTGCTGTACGCCATGAGCGG 5078928 29 100.0 32 ............................. AACAACGGCTACGGCACGATCGGCGAAGGCGG 5078867 29 100.0 32 ............................. CCGGTGATCGCGTCATAGATCTGGGAGTACAG 5078806 29 100.0 32 ............................. CACCGGTGACCCCATTGCCGGGGCTTTCCTGG 5078745 29 100.0 32 ............................. TCGTCAAGGAACGTGCCGTCGGAGTCGGTCAC 5078684 29 100.0 32 ............................. CGGTGCCCGCCCCCGCCGTCACGGGCAGTGGG 5078623 29 100.0 32 ............................. GGCCCCGGCATCTTCCTTTCGCCGGAGGGTGT 5078562 29 100.0 32 ............................. CCGAGGGCGGCAAGGTCGGCGAGGACGGTGTC 5078501 29 96.6 32 ............................T ACCTCGCCAGCTCGGGCTACAACCTGCACCCC 5078440 29 100.0 32 ............................. CTTGCTCACGGCGTGGTGGGCGTCGCCCTTGT 5078379 29 100.0 32 ............................. CACCGCGAGTGGATCTTCGAGGCGGAGCCCCA 5078318 29 100.0 32 ............................. GGGGCGCCCTTGCGGACCGCGCCCTTCTCGGT 5078257 29 100.0 32 ............................. GCCACCGGGGAGAGGCCGACGTGCAGGCCGGA 5078196 29 100.0 32 ............................. GAAGCCCTAACCCGCATGAACGCCGCACCTCA 5078135 29 100.0 32 ............................. TGTGGTGCCTCCACGACCTGACCCTGGACAGG 5078074 29 100.0 32 ............................. GACCGGAGTGACGTCACGTTCAAGCAGGACGA 5078013 29 100.0 32 ............................. TGGCCGACGCCCCGGGCGCGGCATCCGTTTCG 5077952 29 100.0 32 ............................. CTCGGCAAGCCGATCGACCTCGGAGCCTTCCC 5077891 29 100.0 32 ............................. TCCTGAGCCTTCTTCACCGCGATCTGGAGCCC 5077830 29 100.0 32 ............................. CCTCCGGTGATCCCCGCGACGTCGTCGCAGGC 5077769 29 100.0 32 ............................. ATCAAGGAGCTCGCCGACGACACCGCCTCCGA 5077708 29 96.6 32 G............................ TCGCCTTCCACCTTCACCTTGGCGAGTACACG 5077647 29 96.6 32 G............................ ACCGCGGTCCGCCGAGACGGGCTCGGCGTGAC 5077586 29 93.1 32 G...........................G GGGTGCCGTTCGCCGAGGTGCGGCGCGGCCCG 5077525 29 96.6 32 G............................ ACCAGGCGGTCTGGGTTGAACAACCGACTCCC 5077464 29 69.0 0 G...C............A.....AGGAAA | ========== ====== ====== ====== ============================= ================================ ================== 37 29 98.6 32 ATGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : CCCCCCGCCCGACACACCGACCCCCACCCACCACCTCCTCGTGGAATGCACCGACTGCGGCCGCCCCGGACCCCCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACTCCGGCTCCATGGACAGAGAGAACTCGCCCCACCCCACCGACATCGCCGACGTCAAAGCACACATGAACAACCTCCGCGACCTGCTCAAACCCGTCTGAGTGCGACAGTGCGGCAGTGCGGCAGTGCGGCACGCCTCACAGCACCGGCACACAGAAGCCATGAGCAAGCTGCACCCACCGAAACGAACGCCCCTCGGTACAGGACGATCACGCCCCTTGCCTTCAGAACGCCGCCTCTGGCAGCCCGCAAAGGGCAGAATGAATCCCGACGTTTAGAGCGACGAGCAGAACCGCTCACAACCCAGGGGGCGATATGTCCTTTTCTCCGAAGCTTGCCGAAAAGCACCACTCGCCTGCATAGAACCGCAGGTCACGAACT # Right flank : AGGGCCTGCACGTGGCAGGCACCTCGTCGCGCGGCCTGCCCAACCGCCCGGCTCAAGCAGTGGCGCGGCCTGGCCATGCGAACCGACAAGCTTGCCATCGCGAATCAGGCCGCAGTCCACCTGACTGCCATCCTTATCTGGGCTCGTCGCTGACCAGGCATGACGACGCGTCACCGAGCGGAGAAACCTGGTGGCCCCTACCCGAAGAGGCCCATAGCATCCGCCTATGACCGAGGACATCAGGATTGCATACGACGATCATGACGCAGAGACTGAGAGGCAACTCGTCTGGAGGGCCGAGTCCGTCGGCCTCGCAGCGCTCGACATAGACGACGCCGAGCTCATGCACAGCTGGAGATCTGACCCCGTAGCCGCCCACCAAATCGGCATCTGGCCACGCTCACTCACCGCGGTACGCGAGCGCATCGAGCGCGACATCGAGGACGACGATCGCGACGACTTCCTCATCCTCTCTCCCGACAGCGCCCCTGTCGGCTACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //