Array 1 3876-1282 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJQ01000006.1 Moraxella catarrhalis strain 60/120/1 NODE_6_length_96089_cov_25.557203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3875 28 100.0 32 ............................ GCCCAGCCGCCCACACACGCACATCATTTCAT 3815 28 100.0 32 ............................ CTTGAGCGGACTAGCTTTTAACTCAAGATACG 3755 28 100.0 33 ............................ GCTTGATGTCAATAAAAAACAAATTTTAATTCA 3694 28 100.0 33 ............................ TTATAAAGCTATCAAAAGTGATGGCTATGAAAA 3633 28 100.0 32 ............................ TAAAGACTGATTTGGAAGTGTTGCCATATATG 3573 28 100.0 32 ............................ AACAGCATACCTTCACTGGCTTGGCTAAGTTT 3513 28 100.0 32 ............................ GCCACGAACTTTCGGGCAGATTCATGATTTTT 3453 28 100.0 32 ............................ CATCGAATCGCAAAAACTCACTGTTGATCAAG 3393 28 100.0 31 ............................ ATATCGCTAAAACTGTGCCAAGCGTATCATA 3334 28 100.0 32 ............................ GATAAGCTGTACGGGCTAAGCGATACCACTGT 3274 28 100.0 34 ............................ CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC 3212 28 100.0 32 ............................ ACTGTCAATATAAGCCTGCGGAAATTCATAAA 3152 28 100.0 32 ............................ GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC 3092 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 3032 28 100.0 32 ............................ ATATCCAGCGCCATTACCAGCCACCCACTGCA 2972 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 2912 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 2852 28 100.0 32 ............................ TAGCAAATCAGCTTAATCTTTTTATTAAAGAC 2792 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 2732 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 2672 28 100.0 32 ............................ TTCGTAGGTGTAACTATCACAAAGGTGAACTT 2612 28 100.0 32 ............................ TCATATTCAGCATTATAATTGACATGGCTGTT 2552 28 100.0 32 ............................ CTTGATAATTTCTAATTGCGCGGCGCGTATAT 2492 28 100.0 32 ............................ ATTTAAGAAAAACTAAACCAAAGTACCAAGAT 2432 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 2372 28 100.0 32 ............................ TCACACAAGTTTTTGCCAAAACAGTATGACCA 2312 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 2252 28 100.0 32 ............................ AAAGCTTGTCTGAGCGGATTAATACCGTGCAA 2192 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 2132 28 100.0 32 ............................ TATTCTCTGGTGATTTGATTGTAGCAACAGTG 2072 28 100.0 32 ............................ ACGCTATTAAGCAAAATAACATCAGCAGACGC 2012 28 100.0 32 ............................ TCGTAAAAATCGCAAAGTCAACAAAATCAAAA 1952 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 1892 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [1850] 1849 28 100.0 32 ............................ GAAAGTTATCAAAACGGTTTTGGCAGTACTTA 1789 28 100.0 32 ............................ ATGGATTTACAGAAACTAGAAAAAGAATTGAG 1729 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 1669 28 100.0 32 ............................ CATTAAGAGCTTCAAAAATCGGATTAAAAGCT 1609 28 100.0 32 ............................ ATACGCTCAAACCGACCGATTTGAAAGCAATT 1549 28 100.0 32 ............................ AGACTTTCTTGATTTGGAAAAGCCATTTTAAA 1489 28 100.0 32 ............................ GATAACATTGTCATCGCTCATGTTGAAAATGA 1429 28 100.0 32 ............................ ACTATGTCAGTCAATCTCATTGGTGCGTCAGC 1369 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 1309 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 44 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //