Array 1 180519-178263 **** Predicted by CRISPRDetect 2.4 *** >NZ_PESL01000003.1 Pectobacterium zantedeschiae strain 2M scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 180518 28 100.0 32 ............................ GATGGGTGCCAGGATCCAGCCGATAGCCTCTG 180458 28 100.0 32 ............................ TGCGTAATATCAGCGCGGTGCCGGATATGCTC 180398 28 100.0 32 ............................ AAGCGGAATTCGTCTATTTTCTCCAGCAGCAA 180338 28 100.0 32 ............................ GCTGACAAAACAAAGTTGGACGGAATCAGCGC 180278 28 100.0 32 ............................ AAAGAATTGCGTGTATCCGGCATTATCCCGTT 180218 28 100.0 34 ............................ CATTGAGTTCACTGGCTTTTTTATTGGACATAAT 180156 28 100.0 32 ............................ GGAAATAAGCTGGTGGTCTGTGCTGCACAACG 180096 28 100.0 32 ............................ AGGGTGGCAACGGCTGACTATCCAGCCACGTT 180036 28 100.0 32 ............................ TTGCCGATCGCAATCAACCCGCCCAGCACAAC 179976 28 100.0 32 ............................ TGGTCGGCGTCAATATGGTATTGGAGCTGAAC 179916 28 100.0 32 ............................ TTTCTTCAGTGCGCAATGTGAATATGGTCGGT 179856 28 100.0 33 ............................ AACCTTTATTGCACCGTATTTCCCTGTAAACGG 179795 28 100.0 32 ............................ ATCAACATAGCTCTTATTCGCCGCATCCTGCG 179735 28 100.0 33 ............................ ACTGACAATGTTATTGCTTTTAATGAATTATCA 179674 28 100.0 32 ............................ GGTTGCAGAAATGGGAACGGTGGCGCTTTGCC 179614 28 100.0 32 ............................ AATCACGCCCGGAGCGGTCAGGATGCGCTGCT 179554 28 100.0 32 ............................ GCTACCGCATTAAAGAAGGTCAGTTGATCCTC 179494 28 100.0 32 ............................ CAGCAATTCAACGCCAGACGGCCCCGCATAGG 179434 28 100.0 33 ............................ ATGAGCCAGATAATTACACTCGCCCTTGATGGC 179373 28 100.0 32 ............................ GATTGGCCTCCACTGCGCAGGCGGTGCAACAG 179313 28 100.0 32 ............................ TTATCCCGTTTGCTGAGAAAACACAGCTTACC 179253 28 100.0 32 ............................ ATATCCGCCATAAAGAAAGCCAGAGGTGAATC 179193 28 100.0 33 ............................ CGCCAACGATGTACTTATCACTACACAACACAC 179132 28 100.0 32 ............................ TACTGTAAATCGCCTGGCGATGGATGCTGATC 179072 28 100.0 32 ............................ TGTCACTGCCAGCGTAAAATCCTCAGCCGTCA 179012 28 100.0 32 ............................ GTGCAGCACTAATCACCAAAATCGGCCTTGAG 178952 28 100.0 32 ............................ ATCTGCGCACATATCGTTATTTGGGTGAGGGG 178892 28 100.0 32 ............................ GCCGAAGCCAATAACTTTTTGCCCTTCATTAT 178832 28 100.0 32 ............................ AAAAGGTGCGGAAGTGAAAGCCCGTGCTGCCA 178772 28 100.0 32 ............................ TCAGCCAGCGCCCACAGCCGCGTTAACACTTT 178712 28 100.0 33 ............................ AGCAGAGAACGGCTATCAGCGGCTCTTTGTGCG 178651 28 100.0 32 ............................ AGGATCACAACGTTGTCAGGATTACGTTTGTG 178591 28 100.0 32 ............................ TACAAGCTCACCTGGCGTTAAATTTTCATTAA 178531 28 100.0 33 ............................ TGATTACCCCACGTATCCCAGCGGGCGATCTGT 178470 28 100.0 32 ............................ ATCCACATTCAGGATTAAATCATGAGCAAAAA 178410 28 100.0 32 ............................ AAACTGTGCCACGACCTGTGCCTGTCGCGTGT 178350 28 100.0 32 ............................ GCACGCACCCGAATGCGATGCTGTTCGCACGC 178290 28 82.1 0 ....................T...TCCT | ========== ====== ====== ====== ============================ ================================== ================== 38 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTACCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCTGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGTTGGAGGTAATAAACATTGGCACGTTTGGAATGCAGAATAGTTTTTAAGTCCGAAGGCCTAAAGGCGTTATCCATAATATATTTTCTGCCGTAATAGATAGTAGCCATGACGCCAGCGAAATAGATCGCAAGCTAACCATTTGATAAGGAAAAATATAATCATAAGAGACTAATGAAAATCAGACTATCACAGTTGTATGTGAATAATGGTGACCACAAAAAATATTACCCAAGCACAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTGGGGTTAAAAAAAGGGTTTTTATGGTGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGTTACA # Right flank : CGGTTTTAAGCGCCATTATCTGGCTATTATCGAAGTAACACTATCGTCTGTGCTCGATGTGTTATCGTCTTTAAATAACGTATTTTTGATTCCCCTTTTTCGTAACATTTTTAAATAACGGGTTTTTTTATGGGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAGGTTACCTTACAGGGAAATAGTGAGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGATTAGAAGATTATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTGCAGACGTTATGTACGCCTAACCCTAATCAATCGTGGAAAACGGCTATATTTGGCTGTTCCGATCCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 189079-189286 **** Predicted by CRISPRDetect 2.4 *** >NZ_PESL01000003.1 Pectobacterium zantedeschiae strain 2M scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 189079 28 100.0 32 ............................ TTTTAAGCGAAGAGGCCCGGTTAACGTGAGGT 189139 28 96.4 32 .................T.......... ACGATCCGATTATCACCCGCATTCTCGATAAA 189199 27 96.4 32 ..........-................. ATTTCGGTTTTAGCGCGGGAGAACGGATTACG C [189214] 189259 28 78.6 0 .............C......T.C..TGC | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACGCGCTCTCTGCGTTAGAAAAAACGTTCTGGCTAAAAGGATTGCGGGATTACACACAGGTTTCTGAGTGTAATCCCGTACCTAACGACGCAAAGTTTCGCACTGTACGCCGCGTTCAGTTCAAGAGCAGCGCCGAAAGACTACGTCGACGTTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCTCAGCACGAATTCCTGATGCGGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATTAAGAGCCTGTCGAACGGGCAGATGTTCTTTGTGTTTGTGGAACATGGTCCGCTACAGGACGCTCCCGTAGCAGGGCGCTTCTCCTCCTACGGGTTGAGCGCAGAAACCACCGTTCCCTGGTTCTGACCCTTTTTTAACGGCCAACGGCAAGCCATTGATTTTTAAATGCCGTTGGCCGCCTTAATAAAAAAGGGGTTTTCGCAAAAAAAACCATATTATCTTTAATAATCTGATGATTAGCGTGAAAATCTAACA # Right flank : CTATCGGGATACGCCTCTGATACCACTCGCCTCAAAGGGGTTATTCCCCATTCAGCGTAACGATCAGCGAACGGCTGCCGCCGTGGTTGCGATGTTCGCACAGATAGATACCCTGCCAGGTGCCAATATTCAGGCGCCCGTTGGTGACAGGAATCGTCAGGCTGTTTCCCAGCAGGCTGCCTTTCAGATGCGCGGGCATGTCGTCGCTACCTTCATACGTATGACGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGTACCGTAGGGTCAGCATTCTCATTCATCGTCAGCGCCGCCGAAGTATGCTTGATGAACACATGCATCAGCCCGATTTTTATCTGGCGCAGGGCAATAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCCATCCCCCTGCTATCAGGCTTCGCGCGCCAAAATCGG # Questionable array : NO Score: 3.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //