Array 1 104893-104553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSH010000013.1 Proteus mirabilis strain 1001254B_151014_E5 NODE_13_length_110154_cov_31.9942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================== ================== 104892 25 100.0 38 ......................... AACCCGTACAGGTAGTAACGGTCAGATCACCTATTTAA 104829 25 100.0 38 ......................... AACCCGTACAGGTAGTAACGGTCAGATCACCTATTTAA 104766 25 92.0 38 .............A..........A CGCCCGTAGAAGTAGTAATGGTAATATCATCTACCTAA 104703 25 80.0 38 .............A..C.CA..C.. TACCCGTACAAATAGTAACGGTGAGACCATCTATCTCA 104640 25 84.0 38 .............A..C.CA..... AGCCCGTACAGACAGTAATGGTACTACCATCTACAGAG 104577 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ====================================== ================== 6 25 92.7 38 ATAAAAGTGGTCAGGTTATTGGTTC # Left flank : GGCGTTGTGATCACCTATAGCTTAATGACCTTTTTTTTAACCTATCATGGGTAGATAACCGTAAATAAAGGCACGATAACCTGCTGATAATAAAAAGGAAGGAAGTAAATAAAGTAGGGTTTAACTCATCAGTCTGTTTTGGTGCGAAAGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACTCTCGCAAAACACAATATCTTAATAGATAGTTGGCGAATTTTATGCTTTTTAATTTTGGCGTCAATTATTTTTATAAATAGATTATCTTGTAGATAAAAATAAAACAGCGAGAGTTATAATATAAAATAGATAGATTCTATTTTTAGAACTAAGATAAATAATTATGACAAAACCGATTATGCAGTAGGTTTATGAGGTTTTTTATGAAAAAAATCAATATATTGATTGTTATCTTGTTTGTGATTATATCAAGTAATGTATATGCGGAAATCTACAAAG # Right flank : AAAAAAATGATAATTTCGTTTGAAAATAAAATTGTCTGCTATTAGATGACTGTTTTCTGTTATAAACAGAAGACCGCCAGTAGTTGAAAAATCAATTACTGGCGGTTTTTATAATAGTGCTGGTAATTACTATTTCTTGGTTGCTTGGTAAACTTTGAACTTACCTGTTGATGCAAGCACTTCATGAGAGCCAAACACGTGATCAAGAATATCTTGATAAGGTAAGAAAGCATTGGCAACAATACGCAGTTTACCGCCTTTTTTCAAAAAGTTAGGTGCGAGACGAATAATGTCTTCCGCAGCTTGATAGCTGGTACCTAAGCCATCATGGAAAGGAGGATTAGAGACTATCCAATCATAAGTTTCTTCTACCGCAGAATAGACATTGCTTGCAATAACCCGTCCTTCTAATTCATTAACGTTTAACGTGGCAATACTGGATGAAATAGCGGCTGCATTGACGTCACAGAGTGTGAGTTTTAACATCGGGTTTTTCTTGC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAAAGTGGTCAGGTTATTGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 121675-121097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSH010000006.1 Proteus mirabilis strain 1001254B_151014_E5 NODE_6_length_179486_cov_24.2046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121674 29 100.0 32 ............................. GAGATGTAGCCATTATTCTAGAGCCATCAGGA 121613 29 100.0 32 ............................. GCTCTGTTGGCAATTTACCCATGAGATCAAAA 121552 29 100.0 32 ............................. TAAAGCAACGTCCCCTCTGTCGAGTGGTCGTC 121491 29 100.0 32 ............................. GAAATTCATGATTATGAAAATAATTAATAAAC 121430 29 100.0 32 ............................. GCTGTTCACCGTTTTCAACCTGTACAATCGCT 121369 29 100.0 32 ............................. CTTGAATGTAATCAGCCCTACCAATATCAGAT 121308 29 100.0 32 ............................. GTTCTCTGCAAACCAGAAAATGGACTGACCAG 121247 29 96.6 32 A............................ GACAAAAACTTTGCTATCATCACGCCAAAAGA 121186 29 96.6 32 ............C................ TTATCCACGGCTTTAAAAAGTCGAGCAGGATT 121125 29 86.2 0 .......................A..TTA | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGCATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCCCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTAAATATAATTAGA # Right flank : TCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGGTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGTTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCTGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 131680-130553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSH010000006.1 Proteus mirabilis strain 1001254B_151014_E5 NODE_6_length_179486_cov_24.2046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131679 29 100.0 32 ............................. TCTTTTGCTTTATTTTTAACTTGCTCAATTCT 131618 29 100.0 32 ............................. GTAAAATGACTTTGACGTTTATCGGGATTCAG 131557 29 96.6 32 ............................T CCAACCAATGATCACCGCCATTAACACATCTT 131496 29 100.0 32 ............................. GGTTTGTACTTCTTGGGCGCACAGCTCCACCG 131435 29 100.0 32 ............................. CCGCAGCGTGAAGGAAACCCGCGCCACGCTTG 131374 29 100.0 32 ............................. CCGATTAATAATAAAACTGGCCATGTGATAGA 131313 29 100.0 32 ............................. CGAGAGGAGAAATAGAGGCAACTTCTGGGAAA 131252 29 100.0 32 ............................. CCTATGACGTGATTAGTCACGGGCGCTTAGAG 131191 29 100.0 32 ............................. CTTTAAATACAGGTCATGGCGGGAGTATAACC 131130 29 100.0 32 ............................. AAAATATTAACGTGTTTCTTGAGCGTGTAAAA 131069 29 100.0 32 ............................. TGGTATAGGAGTAATATCATGCCAACCAACAA 131008 29 100.0 32 ............................. GGTGACGGGGCTTTCGCCAATTTCTATAATCC 130947 29 100.0 32 ............................. GACATTTGTTATTAGCAATCAGGAAAGAAGAA 130886 29 100.0 32 ............................. ACACTGAGCCGTCTGGTTGGATTTCTACGGGT 130825 29 100.0 32 ............................. TAATAAATACATCATATTTGTATCAATGGCAC 130764 29 100.0 32 ............................. GCAACGAGCTGTGAAAAAGAGAAATTACTAAA 130703 29 100.0 32 ............................. GTGAGTTTTTGGCTCGAAAGATAGCTATGAGA 130642 29 100.0 32 ............................. CCATCAAGTGATTTGAAATGAATTTATTAAAT 130581 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : CCCCAATGCAAAACCTGCGCTTGATTGTCCCGTCGTATTTCCTTATGCGCCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGGGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGTGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATATTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCTCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAATTTTGAAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTAGTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATATTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //