Array 1 849767-850316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 849767 30 100.0 35 .............................. CCCGGAAACCGCCCAAGTTCTCTGAAAGCTCATTG 849832 30 100.0 36 .............................. TAGCTGATGAAAGTTATGGCATTTTTTTCTGTCTCT 849898 30 100.0 35 .............................. GTGTGTTTAAGGACGAGCGGCGAAGAGACACTCGT 849963 30 100.0 36 .............................. TTTGCCATACGGCAACTCGCACATCAAACGGGCGGA 850029 30 100.0 34 .............................. CTGTTGACACTTATATTGAGGTTGCTCAATTTGC 850093 30 100.0 35 .............................. ACATGTTCCAGGAACATTTTCAATTCTTTGTCCCA 850158 30 93.3 35 A..................A.......... ACCATGTAACCGTCTTCCGTTGTTGATGATGTAGC 850223 30 93.3 34 ................T....C........ ATTGGTGGAAGGCCAACATATCGGCGAATTTTGA 850287 30 83.3 0 .................A.T.C..CA.... | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 96.7 35 GTTTAGTTGAAACCATAGTGGTATTGAAAC # Left flank : AATAGGTGGGGTTGGATCAAGTTTTATACATAAAAAGCACCAAGCCCTTGCTTGGTGCAGGTTCGCTTAATCTGTATCTGTATCATCATCACCATACCTGCTGTTAAAAAATTCAGCAAACGTCAAAGATGTCATCCTCGTCCTCCTTAAAGTTTAGTTCTTTCAACAGGAAGAACAAAAGATTGGTCGAATCAGTAAATTCTTTTTCTTCTTTCATCTTATCATAACATTCAGCCATTAAATACAATGCTTTTGCTTCCATTGATTTGTAATGGTGATTTTGTGAAAGAAGTAAAGCGGCGGAAAACCTTTTCTCAAGGAGCGCTGATGTGTAAGTGAAGCGAATGAGAATAATATGGTTTTGAGCTGTTGCTTCGAGACGCTTTCACTCTCTAAAAAGTCTGTGAACCTCCCGGAGTTTTTGCATTATCAGAGGTTCACAGACTATTTCGGCTTTTGCTATAATGAAAATGCTTGAGATGACTGGCGTTCACATACGG # Right flank : CATTCCTGTTCCCTAACCACTTACGAATCAATTTGATGTTTACTTATATCAAACCAAGAGAAGTAAAATATCATCCCGCGGCGATCTTTGCAAAATAAATCCAACCACAACTATCAGAATTATCTCACAATAAGGAGAGGAAGTTTCTGTAGGTGACGTTTTTTGCCAGCATGCATTCAGACATTAATCGATCATCCCTCCACAGGCGGATGGTTTAACCCATTTGCTTGACAATCCCTTATTACTATTTTATACTAACTTACATTAAGTAATTTAATTGAAATTATTTCATTTCCTATATCCATACGAGAAAGGGTGTATCACATGCGTTTGAATACGGCAGTAAGTGTGTTGATCTTGAGGCTTGTGCTCGGTGTGACGTTTCTGGTGCACGGGATCATGAAGTTCACCATGGGGTTGGATGCCGTGGCAGGGATGTTTGCAGGGATGGGTCTTCCCGGGTTCCTGGGGTACGCGGTGTCCGTGATTGAGTTGGTGGG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGAAACCATAGTGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1403090-1404094 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================= ================== 1403090 30 100.0 35 .............................. ACCATTTTCATTTATCCATCTCTCCTTTTATTCGA 1403155 30 100.0 36 .............................. AAAGTTCAAGAGATCGCCAATGGCATCAAAGCCCGC 1403221 30 100.0 36 .............................. CTGGGAAAGTGGGTTCTGACGCTTCCCTACAGCTCA 1403287 30 100.0 36 .............................. ATAAATCAATATTCCACTTCGCCCTTTGTTGACCGG 1403353 30 100.0 35 .............................. GTTTTGACGCAGGTAAAAGCCAAGCGGAAACCCAC 1403418 30 100.0 35 .............................. CCCATGCCTGCACCCATGAATTTGTCCGCCTTGGT 1403483 30 100.0 35 .............................. TCATTCGCTTGGCTCAACTTGTACAAGAAATTCCC 1403548 30 100.0 37 .............................. TTTTCTTCTATGATCTTGGCATAGAAGTCTGCGTTGG 1403615 30 100.0 37 .............................. TTTTCTTCTATGATCTTGGCATAGAAGTCTGCGTTGG 1403682 30 100.0 36 .............................. ATGAAAGAGCAGGCGCTTATCGCATGGGAAACTATC 1403748 30 93.3 37 ...........T....G............. TTTCAGGAATCCGATTTGGCAAGCTGGCTTGTTTTTG 1403815 29 80.0 221 T........A.TT..........-.C.... GTGTATCATGAACGTTCGTTATTGTTGCACGATTACACCATCTCATGTGAGCATCTTTTACTAGTTCCCACTTGACAATATTGTTATCATGAGGTGATCACCCGTCAAAGGAGAAAAGATAATGGCTAAAATCTATAAACAAATCCCATCCGCAGCACTCCAATATCTTCAATACGCCATCCATGAGCACCGCGAGCAACAGATCACCCATACGGGGGCGG 1404065 30 93.3 0 .........A.T.................. | ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================= ================== 13 30 97.4 51 GTTTAGTTGTAACCATAGTGGTATTGAAAT # Left flank : TCATTGTTTATTTAGTTTTTCGCTACATCATTTTCAGGCTTGTCTAAGTGTTACGGGAGTGTGTACCAAATCTCAAGGAGTTGACGGATGGGATGAGTAAACAACGTGTAAAACAAGAAGTGATTGAGCTGGAAGATGTTATTTTGATTATCAATGGTAGTCCCACACCGACTGCCTGTGAAAACTTTATCAGGATGGTAAACCAGATGAAAGTATCTCAAAAGAATGTTACTATACGTTGCAAATGATTTTCTTCACTTGTATTGCCTACCGAAACGAGATGAGAATGGCAAGAGACGGGCTTGTATGTTCAGTTGATGTTGGCAGCAAAGATATGCTAAAAAGAATGAGGACGAAGTGGATATTGGACATCTACCATATCCTTTAGTGAGCTAAAAAGTCTGTGAACCTCCCGGGGTTTTTGCATCATTAACGGTTCACAGATTATTTTGGTTTTTGATATAATGAAAATGCTTGAAATGACTGATGTTCACATACGG # Right flank : TGTCGTTCCGACCCCGGCTGTGTTTTAATGGGCGAACTGCTTAAAAGTGATAACAAATTGCGTCCGCTGATTAAAAAAGAAGAAGCTCTTTTTGATGAGTTGAAGAAAATCGCCGCCCAATGAGGCGGTTTTTTGCTTGCAGAAAAAGGCCGACCAGTAGCACCGGTGCCTTTTCAGGGATAGTGTGAAGAAAAGGAATTGACGAAGTTTTAGTTGAATCCAAAGTGGTATTGAAAGCATGACAAGGGATACCACAAGGAAAAGTGGTGCAACATCCAATCTGCCAACTAAGAGTCCTACGCCTGGGATTGCCAAAGGAGAACCTAATCTCAGTATCCCTGATCGTGACTATAGCGATTTTAAAACGCAAAAGGAAGTGCAAGCCTTCTTCGATCAATTCGCGCCTAATGACCTCACGGCTTAGATCGAGATGGAGATGCGTAGCTTGTGAGAGTTTGTCGTAATTGGAGCTATCCTTTCCGTGTGATAAAAAGTCTGTG # Questionable array : NO Score: 4.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:-1.56, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTAACCATAGTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 1404688-1405317 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1404688 31 100.0 36 ............................... CACCATCAGCACCCCAACCATCGGTCTTCTCTCCTT 1404755 31 100.0 35 ............................... GCCCACACTTCACCTCCAGTTTGCAAGTCAGTTTG 1404821 31 100.0 37 ............................... GGCAAAAGACAGGCCGGCGTAATGAAAAAACGCACGT 1404889 31 100.0 38 ............................... CGGACACGGAAACCCTAACTGATTAGTTCGCGGATCGT 1404958 31 100.0 35 ............................... ATGACTGGTTTGTCGCCAGCTCTTTCAAAAGGCGA 1405024 31 100.0 34 ............................... GTATGGTTTTAGCTAACTCCTTCCTAGTCATCCC 1405089 31 100.0 35 ............................... CAATAAAAAGGGTGGGAAAATCCCACCACTCAATA 1405155 31 100.0 35 ............................... TTAACCGCCGCCTCGATGCATTCTTCCAGCTTTCC 1405221 31 100.0 35 ............................... AGTGAAAGACGTTCAACCTTCCTCCCGGCCTTCTG 1405287 31 74.2 0 CG..A.....TTA.............AG... | ========== ====== ====== ====== =============================== ====================================== ================== 10 31 97.4 36 GTTTTAGTTGAATCCATAGTGGTATTGAAAT # Left flank : ATGAGTTGAAGAAAATCGCCGCCCAATGAGGCGGTTTTTTGCTTGCAGAAAAAGGCCGACCAGTAGCACCGGTGCCTTTTCAGGGATAGTGTGAAGAAAAGGAATTGACGAAGTTTTAGTTGAATCCAAAGTGGTATTGAAAGCATGACAAGGGATACCACAAGGAAAAGTGGTGCAACATCCAATCTGCCAACTAAGAGTCCTACGCCTGGGATTGCCAAAGGAGAACCTAATCTCAGTATCCCTGATCGTGACTATAGCGATTTTAAAACGCAAAAGGAAGTGCAAGCCTTCTTCGATCAATTCGCGCCTAATGACCTCACGGCTTAGATCGAGATGGAGATGCGTAGCTTGTGAGAGTTTGTCGTAATTGGAGCTATCCTTTCCGTGTGATAAAAAGTCTGTGAACCTCCCGGGGTTTTTGCATCATTAACGGTTCACAGATTATTTTGGTTTTTGATATAATGAAAATGCTTGAAATGACTGATGTTCACATACGG # Right flank : TGGGTGTATGACCCAAGGGAACAGTTCCGGTTCCAACACCACAAGTTGTTTTGGATCAGCATGGGGGCTGCCTATGTCTTAGGGAAACTCCTCATCTTCTGGTACATCATCTTGATCCTAATTGTCTTACCCTTGGTCGGCAAAGCATTTGAAAAGTTTATTTCAGAAAAATATGATATATTGCAGTCTAGGTTTTTGCTTCTGAGGTGTTAGTATTCAAAACTGTATGAAAAATTGATATGATAGGCACGGAGGTGAGACTGTGAGAATCAATATAACCTTTCAAGATCCATCACAGGCAAGAGAGAACACATTTTGGTTGGCTATTTTGACATGTGTGGAGCCGTTCCTATTGTGGTTTGGGATCATGGAGATGTACTCGATGACTCCAACCGACTTCGGTTCAGTCGCGTTGCTGACTACATTGCTGATTTTCCGTTTCATGTACACCGCCAGGACATTTACGTATCCGTTGGTGTGGGGTGTATTTTTATATGCCT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTGAATCCATAGTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 4 1414867-1415161 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1414867 30 100.0 36 .............................. AACGGATCAGTTTGCCCACCGCCACCGGTATTTTTT 1414933 30 100.0 35 .............................. TCGCTCCCCGTTCTGTGGTATACTGTCTGCAATAC 1414998 30 100.0 37 .............................. CCCATCGCGGGGCCTTTTTTTGTGGTTGATACTTGGG 1415065 30 96.7 37 .................A............ GATATACGTCAGGTGGTGGCGGGGAGATCGGCGATGG 1415132 30 86.7 0 .................AC......AG... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.7 36 GTTTAGTTGTAACCATAGTGGTATTGAAAT # Left flank : CATCTGATAGCAAACAAGGTTAGCGTTTTTCCGATGTCGTCGATCTCCAATGAGAAAAACTCTCTGGGGATCGACGACTCTATTTATATTAATAGTACAGTTTATTTGAAGTAGGAGTGCCCGAGATAAATTAAAGCTATTAAATACATAGGGGTTAAACTCGCCATTAAGAGATTTTCCTTTTTAGGGATAGTGTGAAGAAAAGGAATCGACGAAGTTTTAGTTGAATCCATAGCGGTATTGAAAGGATGAATGCCCCCCAGTATCCCTGTTCGTCACTGTAGCGATTTTTAAAAAAGCAAAAGGAAGAGCAAGCCTTCTTCGATTTTAGATCGCGATGGAGATAACGTAGCTTGTGAGAGTTTGCCGTAATTGGAGCTATCCTTTGAGAGCTAAAAAGTCTGTGAACCTCCCGGGGTTTTCGCATCATTAACGGTTCACAGATTATTTTGGTTTTTGATATAATGAAAATGCTTGAAATGATTGATGTTCACATACGG # Right flank : TGGGTGTATGGATGAGGAAACCGTTCAAAAGATGACTGCCTGGTGGTGTTGTCAGAATTAAAATAGCTGAAGCTACGGACTGTCGCGGTGAAGTGCCAAGCTATATTTTGAAAGGAAGGACGGGAGTTTCAATTTTAATATTAAGAATATTTTACATATAATTAAGGTGTAACTACATCATTTTTTGATAGTAGGGGGGATCATATGCCAAGATGTCCTGCATGTGGAGAAAAGGAAAACATCGAAGAAACACACTCTGGAAACTATGGTTGCAAGGAGTGCGGGGAGACATTTGATAAAAACGGCAATCCCTATAAACATTAGTGGTGGTACAATGGGATTACCTATTAAGGTAGTCCCTATTTTCAAAGGTGGGAATAGCAATGATCAAAAAAATGATGGTAGATCATGAGGCTTTTCTTAAAGGAATAAAACCAGCCTTGTATCGAGCCGACAATCAAGGTTTGGCGGAGTTGTTTCCAATACTAAAAGAATATCCG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTAACCATAGTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 5 1416284-1416777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1416284 30 100.0 36 .............................. CCGCAACAGGGGCATCGGTATTCCGATTCTTCCATA 1416350 30 100.0 36 .............................. TGAGTTGAAACGTATAGATTTGTTTGAAGTAAGCAT 1416416 30 100.0 37 .............................. CCGACAAAACGTCGTCGGTGGTTTTCTCACGGGAACA 1416483 30 100.0 37 .............................. TCAACCAACCCCGGGTCATCCATAAAGCCGTACTCGA 1416550 30 100.0 35 .............................. CTCGTCACAGGCGTTAATATGTGGGGACTTTCCGA 1416615 30 100.0 38 .............................. GGCGATCTGGCGGCTGGTGGTTTCTCCAGGTGGAAGTT 1416683 30 100.0 35 .............................. TAACCAAACGTTTTATAAATGTCGTCCTGGATCTC 1416748 30 86.7 0 .......................AA.C..C | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 98.3 36 GTTTAGTTGTAACCATAATGGTATTGAAAT # Left flank : CTATTGGGCTATCCACCAAAAGCGGTTGATTTCTATGTTAGGAAGTGTACAGATCGTTCATTAGCTGAGGTCAGCATTGGGCTGGGTTATTCTGGTGTTCGTTGTGTATGTGATGTTCGGGAGTTGATTGAGAATACCATATGGTTGTGGGATACATACCAATTGGATGAAGAGCTGCGCTTGATGGTAGAAGGCGAATTCATTTATGTTTCGTATCGAAATATGGAAGAGTTAAAAAATGTACAGGCTTCAATCCTTCAACGTATCACGGTTACTGCATAAATAATTGGGACTTCGAGGGTTTGGCTACTGAGTTGGAATCGACTAATAAGAAATCTAAAAAAGAAGTGAGGGGTAGATTGTATCGGAGGACTGCATTATCCTTTAGTGAGCTAAAAAGTCTGTGAACCTCCCAGGTTTTTTGCATCATTAACGGTTCACAGATTATTTTGGTTTTTGATATAATGAAAATGCTTGAAATGACTGATGTTCACATACGG # Right flank : CAACTAGAGAAAGGGGGGGGTTCTTTTTGGTTTCAATGATATAACCCCCTATTAATGAGGTTTTTTAATATTTTGAATTAAATGTATATAATCTATACTTATATAAATAAAATATAAAGGGGTATGGTATGAAACAGGTTATTATAAAAACAATTGTCGGTATTGCTATTGTCGCTGTTTCTCTTACAATACTTGGTGTTGTAGCTTATTTGGCTTTTGGGTTAATTATTGCATTCTGGTAAAATTGAGCCTATCCCGCCGCGTATACATATCCAAGCCGACCCGTGACCAGTTGCAGCTCATGTTTGATTGACCTTTGCTCGTATGAAAAAGAAGACCCCTTTTTGAACGCAGGTCATGAATTTTTTTCACAGCACAGTCGGGAACTTACAAAGCTGATTGAGCGAGAACTCGATTTGACCGCATTCGATAAAGATATCCAAGCCTTGCCCAAGTAGCCTTGTTCTAAGACAAGGTTTTTTTGTCTTATATTTTTAATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTAACCATAATGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 6 1417967-1418264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1417967 31 100.0 34 ............................... ATTCGCTCCATTTTCTCGACGCCAACCCGCAATT 1418032 31 100.0 36 ............................... TCTCGTAAATAGTTTTCTGTTTCGGCCGTGTTCCAC 1418099 31 100.0 36 ............................... CTCCTTTGTAAACGTTGATTTGCCCGTCCAAGCTGA 1418166 31 100.0 36 ............................... CACATTCTCTGTCACAGCCAACAGCAAATCTTCTTT 1418233 31 90.3 0 .....................AC.......A | T [1418257] ========== ====== ====== ====== =============================== ==================================== ================== 5 31 98.1 36 GTTTTAGTTGAATCCATAGTGGTATTGAAAT # Left flank : GAGATTATATTTGGCCCTGACGAGTGCCGGCTACCGTGTAAAAAAACATATCCTCTTTGGGGACTTGGAAGTGGATTTGTATATTCCAAAATACAATCTGGTGATTGAAGCGGATGGGAATGCATATCAAAGCACACCAGCACAAAAAGAGCGGGATCGTAAAAAGGAATATGTATTGAAGAAACATTACAAAACTTAAGGTGAATTGATTTAATAGTGATCAAATTAAGAACCGGTTGAATTGGTGCGTGGGAAAGGTTCATGAAGTAACGGGTGGACCAAGAAAAAGTTTGTGGCAACAAGCGGGGGAGGTCATTAGTGGGCTTTATGGATTGTTTAAGGATATAGTTATTCGTAGACTATATCAGACTAGTACAATATACTTAAGTGAGGTAAAAAGTCTGTGAACCTCCCGGGGTTTTTGCATCATAAACAGTTCACAGATTATTTTGGTTTTTGTTATACTGAAAATGCCTGGAATGACTGATGTTCACAGACGG # Right flank : ACGGATGATCTTTTAAAATACTTTCAGGAGACCAATACATATATAAATAACCAAATGGCATAAATGTAACCAATGGATGTAAGTTCCCTCTCCTTTTTGGCAACAATGCACCCATAAGGGGTGGACAGTCAATGAGGGAACAACATCCAGAGCAGAAAGTGATCGAGCTGGAAGAGGTTATATTAGTCATAAACGGCAGTCCTACACAGGAAGCCTGTAAGGACTTTGTGAAGCTGGTCCAACAGATGAAAGTAGCTCAAAAGAACAGAAATTAAGGGGTTTCACTATACGGTCGGGGTGCGCTTTGCATCCCGATTTTTTTGTTATATGATATGTACATAACAATGCACCGAGAGGAGTTCGCAAATGAGCCAAAGCATTTACGATGTGCACAATGTTGCCATTTATCTGCGTAAATCACGTGGCGATGAAGATGTGGACCTTGACAAGCACAGGGATGAACTGGTGTCAATGTGCGAAAAGAATGGTTGGTCCTATGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTGAATCCATAGTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 7 1588534-1589158 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1588534 37 100.0 36 ..................................... TGTGATAGCGACATTTCGGGGCTTCCCGTCTCTTTC 1588607 37 100.0 37 ..................................... AACACCTTTCATAAAACTACTCCCCTCCAATTTTCAG 1588681 37 100.0 37 ..................................... ACGTTAGTCCGATGCCCGACGCCCCCCGACGTGCCCT 1588755 37 100.0 37 ..................................... TGCCGCCCGAATAATCCAGGATGCACTATCGCATGAA 1588829 37 100.0 34 ..................................... TTTTTGGTATAATCAACTGAACTGAATTTTTTCA 1588900 37 100.0 38 ..................................... AGACTATCCCGCCTACTACTGGAAGGGAGTTCAAACCG 1588975 37 100.0 38 ..................................... AAAATAGGGGATACTATCTTGGACGATTTGCATCTCAT 1589050 37 97.3 35 .......................A............. TTGAATGGTCTCCTGCGTCTCTGTTTCCCCCAGGA 1589122 37 94.6 0 ............A..................G..... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.1 37 GAATCAAAGAAATACATCTCATCGAGAGAATTGAAAC # Left flank : TTGCCCTCTTCAACACCTTATCACTTATATTTTCCTCCATTATATTGAGAACTTAGACATCTAGCGCATAAGCTAAGTTATTCTACAAATTAACCAGATAAGGGGATTTATTGTAATGTTGTCTTCATACATTTAAGCTCCAACCTTGTTCATTTTGATTAGGGTGTGTCGCTGGCTTATTCATCAGACAAGCCCTAGTACAAATCTAGCGTTTTATTATTTTAGAATGTAATTTCACCGAATAAGGTCAATATCATGAAACAAGCGATTAATTATGCTATTATAAATAATAGATGGCGCGACCAAATTTTGCGAACACCCCATGCTTCGGAAAAAAGCCAGGGGGTCGTCGGAAATCCTTAATACTTTATGAATAAAGGGGTTTGGGGATTTTGAGACGTATTTTATCGGACATGTTAGGAGCATTTATATTCTTTTTTAGGGAGGTGTTCGCAAAAGGGAATAATCATGGCTGAAGGACAAGCGCTTCGGCAAACGCC # Right flank : CGTAACTTGATCTCTCATAAGAGAGATTTTTTGTTTTAGTTGAGGTGAATGATCAATTGAAAAAGCATGTTAAATATCGAGAGCGGCTATTTGCTATGCTTGCAGAATTATTACTTGATCCTGGACCATATAAAATTAAGGAGACGGCATTGCGTTATGGAGTCAGTGATAAACAAGTCCGCAACGATATCGATTATTTGAGAGAAAAGCTAAATACACCAAATCAAAGGGAGTATATCTCCAGATATCACGGGAAATACGAGGGTAACTTTTCAAGAGGCATTGTGAACCTGAGTCCGAAGGTTAGGTTATATCTTTTCTTAGCACTCAAGCAGGTTGAACCATTGTTGTTGAATGAAGGACAAGAAGCGTATAAGTTGCTGTTTCAACATGCCTGTTCTGTGTTGCCTAAGCAGGATATTGAGAGGATGAAAAGTTGGTCTAAGTTTTATCGAATTAAACAATTTGGTTACCCAAAGGAGCGAATTCATTTTTATCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCAAAGAAATACATCTCATCGAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 8 1599963-1600292 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1599963 37 100.0 36 ..................................... TACTTAGCAACCTCAGCAACAGCCTTATTCACGGCT 1600036 37 100.0 36 ..................................... ACTATCCATTCTGCACCACCGGGAACTCCAATAATC 1600109 37 100.0 37 ..................................... CTTGGTGTACTCGCCCCGGATGGCGCGAACATGTTGA 1600183 37 100.0 35 ..................................... GTTTGACCCGGCAAAATGGACATCCGCAAATAATA 1600255 37 81.1 0 .......................TCC.C..G..C..T | T [1600278] ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 96.2 36 GAATCAAAGAAATACATCTCATCGAGAGAATTGAAAC # Left flank : CTGCCAGATCCAACCCTTCTGTTTCTGAGCGCTTTAAAAATTTCGCATACAGGCAACATTGATATTCCATACTTCATGATTCGGACCATCAAAATTAATTATGCTTCTTTCAAAACCGTGGCCGTCGACTTTGAAAAATTTCAAGCTATCGGGTTTTTGGGGAAAATGACTTTAAATACAAATAAATTGCCTCTTGAGGATCAGAAGTGGCTTTGGAAGTTAGCATTCTATGGTTCGATAATGGGGTTTGGCTATAAAACAGCCTGGGGGATGGGGCAAGTCAAATTAATTCCGCATGATAAAGCTATTTTGCGAACACCCAATGCTTCGGAAAAAAGCCAGGGGGTCGTCGGAAATCCTTAATGCCTTATGAATAAAGGGCTTTGGGGATTTAGAGTCGTATTTATACGACAGGTGATTGGGCAATTCTATCCTTTTTTAGGGAGGTGTTCGCAAAAGGGGGTGATAAATGTTTGAAGACAAGCATTTCGACGTACGCC # Right flank : TGGCGCTATCTGTGGCGACGGCTGAAGGGTAAATAATTGATGTTTTGAAGCAAACCATACAAAGGGAGAGGAAAAAGTTAAGTGGTCAACATGATCAATTAGCTGAGAAAGGATTCGAAAATAGGGCATCAACACAAAAAAGGGCTCTTGGTATCAGACTATAAGCCCTTTTAAAATTTATTTAGGTAGGATAGCGAGCATCTAACTCTCATAATGTTGTAAATATTGATTTGTATGCACGATTTAGTGTTACGCATCAGTAAGTAGTTAAGGTTTAGCAATGAGGGTATATATCATTGTATTTGCCTGTGGATTGGGTCTTGTCATCTTGTTAAACCAGATAATGATTTTTCCAGAAGTGAAGGTAGTTTAAGATGAAGGAGGAATATTATTGTTTATGGGAAAGTGGAAGATACCTACTATTCTATTAATATTATTAATCATGCATTTGAATATCCCCCATTTAGCATTAGCACAGACTCATACATGGTTGGGCACAA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCAAAGAAATACATCTCATCGAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 9 1615967-1617264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1615967 37 100.0 35 ..................................... TCCCTGACGTTAAATTCCACTTGCTAGGGAGTAGC 1616039 37 100.0 40 ..................................... TTCATTGTTTTTTGATTGAATGGACCGCTTCTCCTTTGAG 1616116 37 100.0 34 ..................................... GGGTGAGAGCAACTCTTTAATGACCGTCGGAATC 1616187 37 100.0 40 ..................................... GTGCTTTCTCCGCATCTTGCAGTAATACATAGAGACGAAT 1616264 37 100.0 37 ..................................... GACCATATCCATCAGGGTCTCCGTTCGTAAACGAGTC 1616338 37 100.0 35 ..................................... CGGTTCGCTCTGGCAGATCGACGATCTTGTTTCCC 1616410 37 100.0 39 ..................................... CGAGACATCCTCGACTTTCTTCACTTTCTTTCCTTCAAA 1616486 37 100.0 34 ..................................... TTTGATCCCATCGTCGTGAACTCAATACGTTTTA 1616557 37 100.0 36 ..................................... CGCAGACCGGTTGACACCCGGTGGCGAAAATCCCCC 1616630 37 100.0 36 ..................................... GGTGATAGAAGATTTATCGAATTCAAACAAGGGGGA 1616703 37 100.0 39 ..................................... CATTATTGGTTCAAACGGGATGGCGCGGATTACTCCCAA 1616779 37 100.0 37 ..................................... TTATACGACAAGGACGACACGGCGGGGCAAATGGCGT 1616853 37 100.0 44 ..................................... GTGTCCTGGGAAGTTCATAGCATCACGGAGAATCCGGGGGTTGA 1616934 37 100.0 34 ..................................... AAGAGGGGAGAGGGGGGAAGGAAGGAGAGGGGAG 1617005 37 100.0 37 ..................................... TGATTGATGAAAAAACGGAACAAGAAGCAACTGATTT 1617079 37 97.3 35 ....................A................ TGCGGGGTCTTCTACTCCAAAGACCAGTTTAAACC 1617151 36 94.6 40 ...........T........-................ AGGGTTCCATACCAGACGCCATCTTTCATGATCTTGAACT G [1617174] 1617228 36 81.1 0 T........A..CC......-..........GC.... | C [1617250] ========== ====== ====== ====== ===================================== ============================================ ================== 18 37 98.5 37 GTATCAATGGAATACATCTCGATAAGAGAATTGAAAC # Left flank : GAATCATTTATCGCTAAAGCGGAATGTCGTCCGATTAAAGAGATTGTACATATGCTAGGCAAACATTTGGAAATTTATAATCAACTGGTGGAAGCTTTTAATCATGATGAAACGCTTGAGTATGATATGCTGATTACGTATGAACGTATTCATGCATTAAACTGGGTATGTGGTTTGATAAGTAAATGGGATGACTGAGGTTGAAACATGGTACCCTGAAAGTGTGATGGGCTTGATGGTTTTATTTTCTAAATTATTTAGATATAATGAGTGGAGGGTGTAGGTAGTAAACTTAATGGCGTAGCTTGAAATGCGAACACCCATTGCTTCGGGAAAAAGCCAGGGGGTCGTCGGAAATGCTCAATGCCTTATGAATCAAGGGGTTTGCCATTTGGTGCTAGTATGATAGAACCGTTTTCTGGTGATGAAACTTAATTTTTGGAGGGGTGTTCGGAAAAGGGATAGCTAGACGTTGGTTTTTACAGGTTTCCGCGAACGCC # Right flank : CGGCAGGGAATCCATAAGCATATATAAAAACCGGCTGGAGAGATCTTCCTCCAGCCGGTTTTATTTCTTTATTCCTGATCAGATACAAACACATAGTGCTCGGCAAAGAACTTGTCCAAATCTCGCCCGCTGGTTTGTTCCATGATGCGGATAAAGTCTTTGGTGGTAGTGATACCGAATTTCTTTTGTTTGTAGTAGGCCTGCATCGAGGCGTAAAATTGCTTGTCACCCAATAGCTTGCGCAGGTCGTTCAAGGTGCGGGCGCCGTAATCGTAGACTGTGTCGTAGTAGGCGCTGATGCCTTCTTGACCGTAGGCGGTGAAATAGGAGATCGGATGGGAGAGATGGAATCCGGGAACCGGTTCGGCGGTGAGTTGGTCGAGTTCGTTGTCATAGAGAGCGGCGGCGAAAGTGGCGAAGGATTCATCTAACCAAGCCTCGTCATATTCGTTGTTGCCGATGATGCCGTAGAACCATTGGTGTCCGATTTCATGGGCATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAATGGAATACATCTCGATAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 10 1812554-1812188 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1812553 31 100.0 36 ............................... CACATTCTCTGTCACAGCCAACAGCAAATCTTCTTT 1812486 31 100.0 34 ............................... CACTATCGTATGTTCTATCTGCTGGTCTTCCAGC 1812421 31 100.0 35 ............................... ATTTTTTAGTGGTTTGGGGGGGTGCGAAATGGCCG 1812355 31 100.0 36 ............................... GCAAAGTTCTTCGTTGACATCGACAACAATCCAGCA 1812288 31 100.0 38 ............................... ATCGGTCAACGGATTGTCAGAGGTAACGATATATTTGA 1812219 31 87.1 0 ..............T.............CCG | A [1812190] ========== ====== ====== ====== =============================== ====================================== ================== 6 31 97.9 36 GTTTTAGTTGTAACCATAGTGGTATTGAAAT # Left flank : AGTGGAGCAATACCTGAACGAAAATCGCAGCTTCTTGCTCAAAGGCTATGTGGCTGGGGGACAAGCTTCCGTACCATTGGAGATTGAGAACAAAATTAAAGAGATGTTATCGCCTTAGGGTGTGTCTGTAGCACGTTGGCGGATAGAAGCGAGGAAAACGGTTTTTCTATTGCCGGCCACCAGATATGCACTAGAAAAAAAGCCTGCTGAGTTGATCAGCAGGCTTTAAACATAGCACATGACCTTCTTGCTACTTGTGATTTCTACCGAAACGAGATAAGGTAGGTAAGATGACGGGCATGGCTATTTGAGTTGATGTTGGTAGTATAGATATGCTAAAAAGAATTAAGGGATGAAGTGGATATTGGAGATGTACCATATCCTTTAGTGTGCTAAAAAGTCTGTGAACCTCCCGGGATTTTTGCATCATGAACGGTTCACAGATTATTTTGGTTTTTGTTATAATGAAAATGCTTGAAATGACTGAAGTTCACATACGG # Right flank : CCATGAGTGATGCCTGCTGTGAAATAGATGAGAAAAGCCCGATTTCAAAGAGAAATCGGGCTTTTCCCTAATATTGTCTACTCATGCTTACTTTTTGCTGGGGCTGGCAAAAGAGGAGAATATCCCTAGAGCAAGATATAAATAACAAGTGATCCGATTTTGCGGGAAAGGTCATTCACTTGGAGGAAAGGTTTTCTTCAACATATCCTTTGCCGAGCGCATACCGGTTGCTGATAAATGACGAAGAAGGTGCTCGGCTTGTTTCGGATCAGGGGCAATCCCTTCCCCATTTAAAAGGCGGATGATCCAGTCATACAGGGCATCTGTGTTGCCTTGTGCAATGGCTCGTTCATACCAAAGGCGGCCTTCTTGTTCATTCTGGGGGAGGTATTCCCCATCTAACAAGAGACAACCCAGTTCCCACATCGCCATTGTTTCTCCAGCTTCTGCCGCTTGCCGCAAGAGTTTTTCTCCAGTATCTATATCTTGAGTAATACATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTGTAACCATAGTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 11 2191817-2194788 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================================================ ================== 2191817 29 96.6 35 .....................T....... GCAGCCGCATGAGTAGGAGCCGATCCAGCCGTTTT 2191881 29 100.0 36 ............................. CACTTGCAGCAACTGCGGAGAGGAGTGGGAATACGA 2191946 29 100.0 36 ............................. GATGACCGAAAAGATGAAGTGATAAAATATCTCGTC 2192011 29 100.0 36 ............................. GATGATCCGTTCACGTTTAACGTCACGGTGCCATAT 2192076 29 100.0 36 ............................. AAATTAAACGCCTTATGAGCTTCAAACACCACGAAC 2192141 29 100.0 36 ............................. ATTTTGGGCCAGACAGAAGCGGATCAACCCATTTAT 2192206 29 100.0 36 ............................. CTTCGCCCAGGGGAAGCATACGAGAAGGTGTATCAA 2192271 29 100.0 37 ............................. CTGATATTGGCTCTTCAAAGCCTTCATTGATTCAAGA 2192337 29 100.0 36 ............................. TTATGATAATGTATCGGATGTCAATTTTAAATTCTT 2192402 29 100.0 38 ............................. TCTTTTTGTTGATGAATGGATTACGCTAGTTGAATCGT 2192469 29 100.0 38 ............................. TCAATATTTCATGTCGTATGATTTTGAGGAGCAATTAA 2192536 29 100.0 36 ............................. TAAAGGGAAGAATCGACGCAACCAATTCCGCATACA 2192601 29 100.0 37 ............................. GATGCCGAGAAGTAAACCTCCACTCCCAGCCAGTCAA 2192667 29 100.0 37 ............................. TTGAACCAGTCCACTGCATGCAGTGTGGAGAATTCCT 2192733 29 100.0 37 ............................. CTCGACGGCCATCCTTGTGCAGCTCCTTGATTTTCGT 2192799 29 100.0 37 ............................. CGGATCGTCGCGGCGCTCAAGCGTCAACTCAAAAAGT 2192865 29 100.0 37 ............................. TTAAAACGAGTCCGCCGTTGATCCAAACACCTTTAGT 2192931 29 100.0 37 ............................. GACTCATCGAAGCCTTTCTATATAACGCGATCACCTT 2192997 29 100.0 35 ............................. GGGTCAGACCACTAAAAGTTGGGAAAATAAAGATA 2193061 29 100.0 38 ............................. GCGGTTGAAAAAGCGGTAGAAATCGCTCTTCTATGGTA 2193128 29 100.0 35 ............................. TACTCTGACCAGTGAGCAACAACCACCTTTTGATC 2193192 29 100.0 36 ............................. TGGGTAACTCAAGTCATTTTCCATTTGCTGGGTAGA 2193257 29 100.0 36 ............................. TCCAATACCTTTTTTTCTGCGCCTGTCACTTCGGGA 2193322 29 100.0 37 ............................. TCGGAAACCAGATGCTCATATTATCCCGAAAGAAGAC 2193388 29 100.0 36 ............................. CCATGCGCTGTAAGCGCCACTGTCCAATAAAACCTC 2193453 29 100.0 36 ............................. CAGACACCGCGCACGTTTGAATCGTTTGAGGTGCGT 2193518 29 100.0 36 ............................. TCCAATACCTTTTTTTCTGCGCCTGTCACTTCGGGA 2193583 29 100.0 37 ............................. TCGGAAACCAGATGCTCATATTATCCCGAAAGAAGAC 2193649 29 100.0 36 ............................. TCACGACTTGGGACGGATTACCCGTGTAGCTAAAAA 2193714 29 100.0 36 ............................. CCGCTAGGGCACCGCTAAAATAACCCCACTAAATAC 2193779 29 100.0 35 ............................. TTGAAGGCTGAAAAAGGGATACATGTAGTTTTTAG 2193843 29 100.0 36 ............................. TGAGCACCCGGCGAATTGCCTTTTCTTCTATGATCT 2193908 29 100.0 36 ............................. TCGGAGCGCTTGCCGCACTGATCGCGATTGGTGTTT 2193973 29 100.0 37 ............................. CATGCACGATATGATGCGTTGGTGGCTGAGCTGGAAA 2194039 29 100.0 36 ............................. GGGTGCTTATTCCATGCTTTTTTGCCACATGGCTGA 2194104 29 100.0 36 ............................. GATCTCTCATCTCGTTGAGTTGCCACTGGATATCAT 2194169 29 100.0 36 ............................. TCAAGCCACAAACGGAACAGCGCACCTTTGAAGGCA 2194234 29 100.0 36 ............................. CGTCTAAGTTAGTCTCTAAACAATTGCGTGAGACAT 2194299 29 100.0 36 ............................. AGAAAAGGTAGTACCTAAAGCCCTCCGATCAGAGTC 2194364 29 100.0 37 ............................. GACGATCTCCTGCACGATCTAGAACAAGAACGCACAA 2194430 29 100.0 36 ............................. CAGTTTGAGAAAACGCGCGTTTCCGTGTGGTTGCCA 2194495 29 100.0 236 ............................. CCTATACATACATAAACAAAAAGCCCAATAATCACAAAGCTTTGAGCGATTTTATAAAACTCTCTATTTACTATTTTTGCAGTATACCTTTAGTATTAATCTACCTTTTGAATAGATACTGGTGCTCAAGCTAGACTTTTTAAGGCCTTTTGCTTCTGTTCAAAAAAAGAACTTTACTGCGATAAATTTATCCACATAGTTAGTTAACTATTCATTAGTCTTGTTTCAAATAAAGA 2194760 29 89.7 0 T......A.............T....... | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================================================ ================== 43 29 99.7 41 ATTCATATTCCACATAGTTAAGTGATAAC # Left flank : CAAACTGATTATTACTCCCTAATTCATAAGCCCAAGTGAACGCTTCCTTCACAAATGCTTTATTCACGTCAATCAAATAATATTTGTTATGCCTACTCTTAATCGTTTTATACGAAATGTTCTCCTCTATACATCTTTCTTCAATCTCCTCTTCCATAAAACAGAAAGGCTCGATTACTAGGCATATCGGAAACTGATCTTGAAGCTCAATAAGAGAAATCAGGTTTTGCTGTTTTTCTTGCTTTTCTCCCTCAAAATATATACTTAACGCATATTTGACTGGTTCCTTCAGGGAAAAAGGCAAATCCAATTGCTCTAACTCTACTTTCTCCATATGGATCATAGCCATGCTCCTACATTGTGAGATGGTTTTTACAATGAAAAGACCATCTCTACTCTTACTATTTACTTCCATTTAATTTTTGATCACGAAGAACATATGACATAATGATGATTATTACTGAAACCCAATAACGGCGTATTCCATTTGTCCCATGCAA # Right flank : CCTATAAGATCACACAAGTAAAAACCAGTCATTTCAAGGCTTTTAACAAATTGAATAAGGCTTCAAAATTCCTCAATTGCAACCTTCAATATTAATCTGCTTTCCGAGCATATGTTTGAGTTTGAGTAAGATATCTCGAAACCTTTACTACATTTTATTATAAAAAACCTTACTGCACCATTATAAGAACATGGTTTCAAAGGATTTTTCCTGTCCATATACCGTTTTCTGAATCTGTTTCGGATTTTTTACTTGATATACATACAGTGAATCTACTTGGTCATTTACTACTCCCCTAATCTCTGCCAGACACTTCTTTAATTTACCTTCTGTAATTTCACCTTCAAACACGGAGTTTTGAGTCCAAACCAGATATTTTTTCAATATCTTGTGTACCTTAGCAACACGCTTATCTTCAATGTCATAAGTGATAATGACAAACAAGCTTACCACCACGCTTTCAGAGGCTTATATTCCTCATCGCCTATAAAATGCTTTAT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCATATTCCACATAGTTAAGTGATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 12 2205322-2203338 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2205321 29 100.0 36 ............................. ATCATACGGAACCTGAGAGATAATCGACCTAACAAA 2205256 29 100.0 36 ............................. ACTATCAACAGATGAGGTAACTCATCAAACTTCCAT 2205191 29 100.0 37 ............................. ACCCATCTAGGATCACTCCTCATCCTTCAACCGCTCG 2205125 29 100.0 36 ............................. GTTCTTAGACCAGTTCAAAGAAGATTTGCTGTTGGC 2205060 29 100.0 38 ............................. TATTTGGTACTCATCGGGCGGATCAGCAGGATGCTCCC 2204993 29 100.0 37 ............................. TATTTGCAACTGCTACAACAGCGCCTACTGATACAAC 2204927 29 100.0 36 ............................. GTCACAGGTGTGCCGTCGCTGTTTTTGAATACTATA 2204862 29 100.0 36 ............................. TTCAATGGTGAAAAGGGAAGCGGTTGCTTCCCCAAG 2204797 29 100.0 36 ............................. TTTCTTCGCTGTTCGTGTTTGTTTTTTAGCCGCTCC 2204732 29 100.0 35 ............................. TCTGATTTCTTAGGCAAATAGTTTTTGTAGTGGCC 2204668 29 100.0 37 ............................. AAATAACCCGGAGTGCTTGGTTTACGGTTCCGCAATC 2204602 29 100.0 36 ............................. GATTTATCATTATCAGGACACACGGTCAACCGTTTT 2204537 29 100.0 36 ............................. TTCATTCAGAAGTGCACACGCTGTCGTGGTCTTTCC 2204472 29 100.0 36 ............................. AATTTATCGAGCTTGGAATGGGTGATGACGATCATC 2204407 29 100.0 36 ............................. GATCGCCTGACGGGTAGCGTTCGCTTCCCACGTCGT 2204342 29 100.0 36 ............................. ATCTTTTTCTTCCTCTGCTAGTAGCAGGGGCTGATC 2204277 29 100.0 37 ............................. TTCATCGTTGGCCCCGATCACGTGAACCAATCGCCCG 2204211 29 100.0 36 ............................. GTTATTCCGATCACGGCTGTTTGAGCCTGGGGGCTC 2204146 29 100.0 36 ............................. CAGTTTGGGCAACTTGCGTCTTGTCTGTTTGCCAGG 2204081 29 96.6 36 .......................A..... TTGTCGCTTGACGTAAGGGTCTTTCACATGCATGAG 2204016 29 96.6 35 .......................A..... GAGTTCGCTGAAGAAGTGTTCCGGCGCCTAGAGAG 2203952 29 96.6 36 .......................A..... GCGACAACGAAAAAATGGAGCAAACCAGCGTACTGG 2203887 29 96.6 36 .......................A..... AACATCGAAATGATATTGCTGAAACGGAAGCAGAAA 2203822 29 96.6 35 .......................A..... ACACATCTAACCGCGATTCAATTCGCTGAAGCATG 2203758 29 96.6 35 .......................A..... CTTGACCGGAATGGGAAGCGACTCGTTAAAGCGAA 2203694 29 96.6 38 .......................A..... TTATTGCGTTCAATGGATTGCATTTCTTTTTGTCACTC 2203627 29 96.6 35 .......................A..... AACTCAGCCAGGCGAATCCGCCCCTCTTTCAACCC 2203563 29 96.6 36 .......................A..... CCACAAACGCGCCGTTCACGGTGACGCGATACATAG 2203498 29 93.1 36 .....A.................A..... ATTCTTCTGGTCCATCTGCGGATAAAGATTAATGCG 2203433 29 96.6 38 .......................A..... GGGACTCGCTTTTGTTTGGTGGTCGAACGTCAATGGGA 2203366 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ====================================== ================== 31 29 98.6 36 GTTATCAATTAACTATGTGGAATTTAAAT # Left flank : CACGGCCGATATCCGCGAACTCTGAGCCTTAGACAAAGAATCACGACAATTGGCGATGCAAACAGAGTTGGACCACATCTTCAAGGACAAAACCGACATTGCACATTGGCTTACATCCTTTCTAATGCAGACGTATCACCGTAATTAAAGGTAGAACCCATTGCTGTAATGGGGAAGTTCCAAAAATGCGATGATTTACGTTTCTTTCCTTTTAATGATCTTCCGGCAAATATGATCTTTTTACTTTAGTTTTGTTTGGCAAATGATTACCCTATTTATGGGGTTTAATATTGTTGTCCTTTTCATTTTAAAATGGTGCAGTAAGGTTTTTTTATAATAAAATGTAGTAAAGGCCTTAAAACACCTTACTCGGAACACTATCCTATGCGCAGGAAGCAGATTAATACTGAAAGTTTAATGCAATTGGAGGGGGATTGAAGTCTTATTCAATTTGTTGAAAGCCTTGAAATAACTAGGTTTTTCTCATGTGATTTTATAGG # Right flank : ACACGATCCAAGCGGCAACCAAAGGGAAAACTTACAGCGGTGGTGTTTCACCGCTGTTTTTGTGTTGGACACGAAAGTAGCTTAAATATAAACTAATGACCCACCGAAAATGCAGTAAACCTCAAGTTAGAAAAATCAGCAGATGAAAATGCAAAAAAAGTCTAGTCATATCAAGGTATTGATGAATATCCCGTTAAAAGAGGTTCACTGCAAAGTTGTTATGCAAGATAAAATAAGTTAATATATAAATTGTTCAGAGAGGAGGTAATTATGAGAATAAAATGTTCATTTACTTGCGAGGAACTTCCCCGTTCTTATCGAACGATGTTTGTAAGTTTGATTAAAAAAAGTTTGGAAACATCCAACGAAAATTATTTCAAGCAACTTTATTTTTACCAAGACAAGGCGAACAAGCGAACTAAGAACTTCACCTTTTCAGTCCGACTTAAGGATTACGAGCTAATTGAAGATCAATTTAAGGTGAACGGCCAGGTTGATTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCAATTAACTATGTGGAATTTAAAT # Alternate repeat : GTTATCAATTAACTATGTGGAATATAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //