Array 1 1060-727 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHSP01000012.1 Bifidobacterium longum subsp. longum strain MCC10096 contig0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1059 29 100.0 32 ............................. AACGCCGACGACCAGCCAGCCGAGAAGCTGCG 998 29 96.6 31 ............................C ACCACCATGACACACACCAACCACGCGCTCC 938 29 100.0 32 ............................. GACGATCGACTCGCTCCTTCTGAACCGGAATG 877 29 93.1 30 ............CA............... GCCGTTGTTCTTGCCGACGAACGCGGCCAT G,C [848,868] 815 28 82.8 29 G.......-...CA..A............ AACGCGCCGTTGCCTGTACTGCAGGCCAA 755 29 86.2 0 .......T..T.CA............... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.1 31 ACCTACCCCGCAGGCGCGGGGATAAACCT # Left flank : CGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGGACTACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGCACGACATTCCACTGGACCACGCCCTGCTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTACGACGCGATTGGAGCCGACTGCTCGACTGATTGTCCACCAGATTGCCAGCACTGGACAATCGGCTCAGAAAATAGGTAACAAACTTGCATAATAGACCCATGCATGGTCTCGAAAACGTTGAAAACTAAACT # Right flank : GTGAACCGCTTTTATTGACATCTGACTTTTGTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAATCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTACCG # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCAGGCGCGGGGATAAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 2139-2532 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHSP01000011.1 Bifidobacterium longum subsp. longum strain MCC10096 contig0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2139 28 100.0 33 ............................ GATGACTTCCTTGACGTTCTGCGCGCCCTTCTT 2200 28 100.0 33 ............................ GTACCTGCATACCTTCCGTTCAGCGTCCCAGAA 2261 28 100.0 33 ............................ TGGCACGTGCAAGTACTTGACTTGGTTGGTCTC 2322 28 100.0 33 ............................ CTTGGAAGCGGGTGCGTGATGGCCGGCAGTCAA 2383 28 100.0 33 ............................ GAATAAATACAAGATTAAAACCGAGAAATTGGT 2444 28 100.0 33 ............................ GAACACCCAGCAGGTCGAGGATGAAGATCGGAA 2505 28 92.9 0 ..........T..G.............. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CAGCGACCTCGCAGCCCTCCGATTCGGCGTGCAACCAGTCCACACAGGCCCACGGTTGACGGACTTCCAAACCATGGGCAAACGAGCTGACGGCAAACCCAACCCGTTGGAGACGAAGGAATATCTACAGGATTCCACATTCACCGTCGGCTTGGAATCCACGGACCTGCGACTCCTCATCAGAATCGGAGCCGCAATCCAACACCCCGTATACATGCCATACCTAGGACGACGCGCCTGCCCACCAGCCGGCCCTATTCGAGTCGGACTGGTCGACAAACCGTTGGAACAGGCATTCAAAGGCAAGGAACGGATACATGTTGAGACCGTCGATGGCACGGAAGCACACTGGGATCAACCGGCCAACAACCGAGTATTCCAGGCACGCTACTCCAACGCCATCGACCCGTTATTCAATGCGGTAGCCGAAGCGCAGAATGACTGAGCGAATCAAATATTTCCGCACTCATGCAGTCACGAAATCCTTTGAGAATGCAAGT # Right flank : CAAAGTCAAGCGAAATGCGAAACACGGCGTGTCACTTACCCCGCGCATGCGGGGGGTGGTTTCTTAAAATGTCTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAACCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCAACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 75332-74010 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHSP01000018.1 Bifidobacterium longum subsp. longum strain MCC10096 contig0018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 75331 36 100.0 29 .................................... ATGGTCTCGGTGTTCGCGTCGTAGAGTCC 75266 36 100.0 28 .................................... ATGCCGTTCTCGGATTCTCCCGGCGATT 75202 36 100.0 28 .................................... GGATCGCCTCGCGTCCAGCCGCCTGTTC 75138 36 100.0 28 .................................... TTGATGGGGCGTAGCAGATCCTCATAGA 75074 36 100.0 28 .................................... TTAGGCACGCTATTAAATTCCAGCAAAA 75010 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 74946 36 100.0 28 .................................... AATGCGCTGAAATACGGGTTGGCCAACG 74882 36 100.0 29 .................................... GTGAGGGACACCTTCATCCGCATACTGCA 74817 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 74752 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 74688 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 74624 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 74560 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 74495 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 74430 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 74366 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 74301 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 74237 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 74173 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 74109 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 74045 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 21 36 99.3 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCGGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 170711-171055 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHSP01000019.1 Bifidobacterium longum subsp. longum strain MCC10096 contig0019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 170711 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 170777 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [170783] 170861 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 170921 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [170969] 170969 27 100.0 30 ........................... GTCACGATCATCGAAGTCACGGTCATCGCG 171026 27 81.5 0 C.............C.....C....CG | GC,C [171043,171047] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCAGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCGATGGAATCGATGATGGACTTGGCCTTCTTGGCGGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCGATCTCAGCGCCGGTATCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACCTCGCCGATCTTCTCGACCGGA # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //