Array 1 31391-32518 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOH01000006.1 Salmonella bongori serovar 48:i:- strain BCW_1552 NODE_6_length_233793_cov_0.305237, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31391 29 100.0 32 ............................. GTATGAGAAAAGTCCCCCCGGAGGCTGTACCA 31452 29 100.0 32 ............................. TGGCTGGTGGTGTACTTAACGGAGAATTTGAC 31513 29 100.0 32 ............................. GCGTTATGGTCCGTCAGGTTGGATCAGATGGT 31574 29 100.0 32 ............................. ATTGACCTGCTGCCTGAACCTATTCGCGAGCA 31635 29 100.0 33 ............................. TTCTGTATTGATTTTGCTGGCATGTTCGCAACA 31697 29 100.0 32 ............................. GCTGACGCTAGAGCGCAGAGAGCAATAGACGC 31758 29 100.0 32 ............................. TTGCGGCCTTAGTGTCGGGGGCATGTAAGGGC 31819 29 100.0 32 ............................. TTATCGCGCAGGAGATGTTCTGCGTTTGTGTG 31880 29 100.0 32 ............................. TTGCTGGCTTTTTTTATATTTGAGTTGGACAC 31941 29 100.0 32 ............................. GTTAATTTGTTTTTGTGGGGAATTATTGTTGG 32002 29 100.0 32 ............................. TCGCTGCTCATCTGATAGAGCGAGCATTCTTG 32063 29 100.0 32 ............................. ACGGGGTTTTCAGCTGCAGGCGAACTGGTGGC 32124 29 100.0 32 ............................. CGAGCATAGCAGAACCGCCGGAAATAAATTCC 32185 29 100.0 32 ............................. GGAATATTCCACAAGCATTGAAAAATGCCCAA 32246 29 100.0 32 ............................. GCTAATCTATCTCAAACTATTCGTTATGCATT 32307 29 100.0 32 ............................. TGGAGGCGTTACAAAAATGTTAACTTACGAAC 32368 29 93.1 32 .............T.............G. GAGTAGATACGGTACAATGTAAAGTCACAGAC 32429 29 100.0 32 ............................. CATGTTTTAAAATGTCAACATCTTTTTGCAAA 32490 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCACTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTATCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTTTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTAAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48515-49276 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOH01000006.1 Salmonella bongori serovar 48:i:- strain BCW_1552 NODE_6_length_233793_cov_0.305237, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48515 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 48576 29 100.0 32 ............................. TAACGTTTGAAAGAATGCCTTTGGCATACATA 48637 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 48698 29 100.0 32 ............................. ATGCCAGTGAGTCACGATCCCATCTTTTATTA 48759 29 100.0 32 ............................. ACGCGCAGAGCCTCAACACAATCCGCGACGAG 48820 29 100.0 32 ............................. GGGGCGCAGCTGGCTGCGATGCTCAAATCTAT 48881 29 100.0 32 ............................. TCTGTTTCCGCAGGCGGCTGCGACACGTTCTA 48942 29 100.0 32 ............................. GCGGCGTCAGGAGAGAAAAATCAATTCAACGC 49003 29 100.0 32 ............................. AAAATAGACTCAAGAGACAAAATAAAAACGCC 49064 29 100.0 32 ............................. ATCGCCGAGCAGCTCGCCCTCACGCCATACTA 49125 29 100.0 32 ............................. GATATTATACGGATTTGAGGTACGAGGTGACG 49186 29 96.6 32 ............T................ GGTCTACGGTTCCGCAGTGGCCCGTAAGTCGG 49247 29 82.8 0 ............T........C.TT..T. | T [49272] ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGTGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTGTTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGTTCTCTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //