Array 1 46369-43470 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGQ01000003.1 Salmonella enterica subsp. enterica serovar Albany strain BCW_2135 NODE_3_length_89775_cov_2.26946, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46368 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 46307 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 46246 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 46185 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 46124 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 46063 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 46002 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 45941 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 45880 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 45819 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 45758 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 45697 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 45636 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 45575 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 45514 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 45453 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 45392 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 45331 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 45270 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 45209 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 45148 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 45087 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 45026 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 44965 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 44904 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 44843 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 44782 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 44721 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 44660 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 44599 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 44538 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 44477 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 44416 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 44354 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 44293 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 44232 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 44171 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 44110 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 44049 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 43988 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 43927 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 43865 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 43804 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 43743 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 43682 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 43621 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 43560 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 43499 29 100.0 0 ............................. | A [43472] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 64784-62926 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGQ01000003.1 Salmonella enterica subsp. enterica serovar Albany strain BCW_2135 NODE_3_length_89775_cov_2.26946, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64783 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 64722 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 64661 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 64600 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 64539 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 64478 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 64417 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 64356 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 64295 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 64234 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 64173 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 64112 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 64051 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 63990 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 63929 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 63868 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 63807 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 63746 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 63685 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 63624 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 63563 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 63502 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 63441 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 63380 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 63319 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 63258 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 63197 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 63136 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 63075 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 63014 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 62953 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //