Array 1 8233-10836 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNIO01000292.1 Xanthomonas oryzae pv. oryzae strain FJ16 scaffold298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 8233 31 100.0 34 ............................... TTCGCTTCCTGGTCATGCAGACGTGCTCCGGTAA 8298 31 100.0 35 ............................... ATCCGGCAGTGCATGCGAATCTGCAAAGCGTAGCC 8364 31 100.0 35 ............................... ACCGCCGAGTGCAGGCGATTGATCCACTGCGTCAT 8430 31 100.0 34 ............................... AACGAAGGTGTGCCGCGTGCTGGCAAGAGCTACG 8495 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 8562 31 100.0 34 ............................... ACCGTCACCGTGGTCATCACCATGGCCATCACCA 8627 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 8692 31 100.0 35 ............................... CACCACCACCGCCAAGGTCGGTGCTGGTGCGTCCA 8758 31 100.0 34 ............................... CGCTTCTGCTGCCTATGTCTCCGGATCTTCATCC 8823 31 100.0 35 ............................... GTGCCGGGCACCGTGTCGCTGGATGAAGCGGTACT 8889 31 100.0 35 ............................... TCAACAAGGGCATCCAATGCATCCCAAGTTTCCTC 8955 31 100.0 35 ............................... ATTGACTGTGCCAGCAGCTGGCGATGCGGCCCATC 9021 31 100.0 35 ............................... TTGACTTCGGGGAAGATCTTCGCAGCCGCCATCGG 9087 31 100.0 35 ............................... TCCTGGGCTTGCACCAATGCAACCAAATGTCAATG 9153 31 100.0 40 ............................... AAGGCACAGGCTTGGTGTAACTGACCGTGCTGCAATTGAC 9224 31 100.0 36 ............................... AAGGCGTCCGCAACACAGCAGCTCCAAACTCTGTCA 9291 31 100.0 36 ............................... AACTTGTTCGACTGGTCACGCGCGATCAGTGCGGCA 9358 31 100.0 34 ............................... CCATCCGTTGAGTGCGCGCAGAGTGCGTGCGCAA 9423 31 100.0 34 ............................... TTCGGCTAATGGTGGTGAGGGCAGGGCGGCGCTT 9488 31 100.0 36 ............................... GGCCACGATGGGCACCATGGATGGCACGTCGTCCGG 9555 31 100.0 36 ............................... ACGGCAACTGCGCAGGCGATTGTCGATCTCAAGGCC 9622 31 100.0 34 ............................... CTCCACCAACTACGGGTAACGCCTATGTCGGAGT 9687 31 100.0 34 ............................... TATTTGTCTTGGTGGCCCTCTGCGAATTGCACAA 9752 31 100.0 35 ............................... ACGGTGGCTGTTAGCTCCAGTACTGTGCTTGCAGC 9818 31 100.0 34 ............................... GGGAGTGGCCGGCGGACAACACGCCCGACTGGGC 9883 31 100.0 35 ............................... TGGACGCCGATGCGACGCCCGTGCCTACGTGGACC 9949 31 100.0 36 ............................... TTGCCAAGTGCCCTTACAACGGTGAGGGCTGTGTCT 10016 31 100.0 33 ............................... TGGCCACCTTGGACCTGCACGAGGAAGTCTTGA 10080 31 100.0 35 ............................... TTGGCACACCGCTGTCGCTGACGCTCGCGCAGCTT 10146 31 100.0 35 ............................... CAACCAAGCTGGCCAGACCAAACAGGTGTTCCCAC 10212 31 100.0 36 ............................... TCATTACGTTTAGCACTCATCACACACCTCTGTTGG 10279 31 100.0 34 ............................... ATCTTGCAAGGCACCACCAGGCTGACTATCAACA 10344 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATGTA 10410 31 100.0 36 ............................... CTGGCGAAAGAAGGCAGCCCCGCATGGGCACCTGCT 10477 31 100.0 34 ............................... CTGACTCCTCCGGATGTCCGTCTGACCGTCCGTG 10542 31 100.0 35 ............................... CACGGACCGGCAGCCAGCTGTTTGTACCAACCAAA 10608 31 100.0 36 ............................... AAAGTGGAGGATCGTAAATGAGCACATTACCTAGCT 10675 31 100.0 34 ............................... CAGCTCAGCAACACGCTGGCGGGCGGCCTGCACT 10740 31 100.0 35 ............................... TTGTACTTATCACTGTGGAAATGCACACCGTTGTA 10806 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 40 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : TAAATAGGCTGAATATGTTGACACAGCGCGAGCTAGGGAACCTCTGAACAACGCACCACAAATGCGAGACACTATTTGTTCGGAATGAGGAGGCATCCATGCAACTGACGTTCGGTGACGCCGAGGGCCTGGGCAAGCGCAAGCAGACCCGGCGCGAGATCTTCCTTGCGGAGATGGAGCGCATCGTGCCGTGGAAGCGACTGCTTGCCCTGATCGAGCCGCACTATCCGGTGTCAGGACGACCGGGTCGGCAGCCGTACGCGCTGGCGACGATGTTGCGGATTCATCTGTTGCAGCAGTGGTATGCGTTGAGCGATCCGGCGATGGAAGAGGCATTGCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 244-4467 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNIO01000324.1 Xanthomonas oryzae pv. oryzae strain FJ16 scaffold330, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 244 31 96.8 34 .C............................. ATCATCGGTCTCGATGAGGATCAAGCGCCCTACG 309 31 100.0 34 ............................... TCATACCTGTTTGTATTGTTTGACTGATTTACAT 374 31 100.0 34 ............................... CACAACTACATTAGGCATTATGAAAAAACTACCT 439 31 100.0 34 ............................... ATCGCCGCGTCCCAGAACGAACACGAGCTAACCA 504 31 100.0 33 ............................... AATGACTCTGCAACGGTGAGTGAGAACGCTCCA 568 31 100.0 34 ............................... CAAATGACCGCAGCGCCGCGGGTCGGGGTGCCAG 633 31 100.0 34 ............................... GCATTGGCCGTAGTCCTCCCGTCAATTGCAGTGA 698 31 100.0 35 ............................... AGGTGATCTCTCTGTCACTGGTACAGTCACAGGCA 764 31 100.0 36 ............................... TCCGGTCTCGGACGTTTGGTCGACATCGGTTGTTTC 831 31 100.0 36 ............................... GTGCTAACCTGCTTAATCTGCACCTGGTTATAGACC 898 31 100.0 35 ............................... TCTGTTATTGGTCGGGATGATCTGAATGATGGTAC 964 31 100.0 34 ............................... AGCGTACCCGGATCCAGCAACACGCGCTGCCCCC 1029 31 100.0 35 ............................... CCGCGTTTGAAGACGACTTGAAGGAGCGCGTGCGC 1095 31 100.0 36 ............................... CCGGTCCAGTCTCGGCAGATCGTGCGGCTCATCGCG 1162 31 100.0 34 ............................... GATGGTGCGAAGCTCGCACGTCTCGGCGGTGCCT 1227 31 100.0 33 ............................... AGGAAACGGTCGCCATTGGGCAGGCTGCGGCGC 1291 31 100.0 36 ............................... GTGAACAATGCTGCCGTCGTTGCTGAGGGTGCCCTC 1358 31 100.0 34 ............................... TACTAACAAATAGCGGGCAGGGGTGGGCAATAAG 1423 31 100.0 34 ............................... GCGAAGAAGACCGACACCACGCATGTCATTGCGC 1488 31 100.0 35 ............................... AATGCCGTTGGCTACATTGAGCCAGTTGTGGGCGG 1554 31 100.0 34 ............................... CAGCGCAATATGATCACGGTGCTGGCCGAAGAGC 1619 31 100.0 35 ............................... ATTGAGGCAGCCTCTAGCTGGCGCTGCGGACCATC 1685 31 100.0 33 ............................... TCAACAAGCCCCAGGACTGAGTTGCAGCCCCTG 1749 31 100.0 35 ............................... GTGTCGTTGACAGCCCCTGCGGGGCGCAGTCACAG 1815 31 100.0 35 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGCA 1881 31 100.0 35 ............................... ACAATGCATGTCAAGCCCTGCACGTAGGTCCGCTA 1947 31 100.0 34 ............................... TGGCGGTGATAGCTGCGATTCGCCGCCGAGTTGT 2012 31 100.0 36 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGGCC 2079 31 100.0 34 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGG 2144 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 2210 31 100.0 34 ............................... ACCGTCACCGTGGTCATCACCATGGCCATCACCA 2275 31 100.0 33 ............................... TATGGCTGATATTTATGTTGCCCGTACTGGCCT 2339 31 100.0 34 ............................... GATGATGAAGACCTGTTCGCGGTGCGCGCGCAGC 2404 31 100.0 34 ............................... ATGAAGGTTCCGTCTGGCGGTTCGTGTCCGGTGT 2469 31 100.0 34 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGG 2534 31 100.0 38 ............................... AAAGGATTGACCCCAGTCATTGGGGTGGTGGTAAGAAG 2603 31 100.0 34 ............................... TGTCTGGCCCCTGTCTGCTTATCTAGCTCCGCAA 2668 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 2734 31 100.0 35 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 2800 31 100.0 34 ............................... TGCGTGGTACTGGTGCCAATGATGGTCTGCTGGG 2865 31 100.0 35 ............................... TCCATTGCCAGCACATCCACCACATTGTACTTCCG 2931 31 100.0 35 ............................... ATCTCGTGTCATCAGACCATTGTTGACGAGCTGGC 2997 31 100.0 35 ............................... CCACCAAAGTTACCACGGGCATACCACTGTTTGAC 3063 31 100.0 36 ............................... TGCCTGTCAACAAATTTAGCAAACATTTTTATTAAC 3130 31 100.0 34 ............................... CTGCGCAAAGTGGCATGGTGTAGACACTGTGCTG 3195 31 100.0 34 ............................... CTGAGCGTCGAACACTATTTGAAGCACCTCGCCA 3260 31 100.0 33 ............................... GTCCAGCAGTATGCAGCACAGGCACGGATTGCC 3324 31 100.0 34 ............................... TAGCAGCTGGCGATGCGGGCCCGGGGGGCCTATG 3389 31 100.0 35 ............................... TCCCTCAGGTCAGTAAATACATCAGGCAAGCTCTC 3455 31 100.0 35 ............................... CTCAATGCTACGTGAGGCCGCTGGTGGTCTAGCTG 3521 31 100.0 34 ............................... TGGCCTCGAAACTTAACTAATTACTCGGAGACAT 3586 31 100.0 34 ............................... TGGTGCTGCTGCCGCTGGAGGCCCAGGCGTAGCA 3651 31 100.0 34 ............................... GTAACGCGCCCGACGGTGCCAGTCCCTGGGGTTA 3716 31 100.0 35 ............................... GGCACTAGCTGACCTTGCTTGAGCTCCCACTGCTC 3782 31 100.0 35 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATG 3848 31 100.0 34 ............................... TTGTTTTCGAGTGCGAGCGGTGCGGCCGTTTTGA 3913 31 100.0 35 ............................... CTATGAAACTCGTCACTACCGACGAACTCCGCACG 3979 31 100.0 34 ............................... TAAGCTTGGTAGTCACGTTTTGCGGTCCATGAAT 4044 31 100.0 35 ............................... CAGGTACTAACCGGCCTGTCGGAGACGTGGCTGGC 4110 31 100.0 34 ............................... TGCCGCACGCGCGTGATCGAGACGACCTCGCGCT 4175 31 100.0 34 ............................... GCCGGCGGGATTAGGATGGGGGTATCAGCTGCCC 4240 31 100.0 35 ............................... GTAATGTCGATGCGCGTGGCGACGCAGTGCAGGAA 4306 31 100.0 34 ............................... AGTTGCCTACATGACCTTCAATGACTCTGCCAGC 4371 31 100.0 35 ............................... GACAACCACGCACCCGGGCGTGCCTGCACCGCCCG 4437 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 65 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TTCTGCGGGTGCACCCGCGCGGCCATGGGCTCCACGCTCTTGCGCCCTCCAGGCAGTAGCAACCCTTTCAGGTACCAGTGTGCGGGCTGTTTGCGATCCGCATGGGACAGGGCGGCAGCAACTACTTCCCCGTACTGTTCAAAACGCACTTCCAGTGACCTATTCAACACAGCTCTCCCACGCGGCCTGAAGGTCTTCCAATAGTGGCACAAAGGTACGATTATTTGTAACACAGTGGAACTAG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //