Array 1 1457297-1454423 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR594041.1 Streptococcus gordonii strain NCTC9124 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1457296 36 100.0 30 .................................... CAGGTATGCGGATTAGTGACATCCTTCCAT 1457230 36 100.0 30 .................................... TCTAATGGTCTCTTGCTCATTGATTTCTGG 1457164 36 100.0 30 .................................... CCGCATAGATTGCAGACCATTCTTTTTCCG 1457098 36 100.0 30 .................................... CAAGAAATGAGAAGGTGCAACGAAGCAATG 1457032 36 100.0 30 .................................... ATAAAGACTTGTCCGAATTTACGAACGACA 1456966 36 100.0 30 .................................... AACCATCGCAAGGACACACAGAGTGTCTTG 1456900 36 100.0 30 .................................... AAAACAAAAAAGCAAATGCTGTAGTCATTC 1456834 36 100.0 30 .................................... CAAAAGGTGTAGAATATCTTTGTAATATAT 1456768 36 100.0 30 .................................... GTGCTAATTTTAATCTTTTCAGACGAAACA 1456702 36 100.0 30 .................................... TGGTAGAAATCCAATGAGATTTGATTACCT 1456636 36 100.0 30 .................................... AATACTTATCATTATACAATTATATCACTA 1456570 36 100.0 30 .................................... CGGACTGGATGAATAACACTCTGAACATAA 1456504 36 100.0 30 .................................... TTACCGAAATTCATGGAGCAGACCAGCAAA 1456438 36 100.0 30 .................................... TAACTTGCGTACTGATGAACCTTTCTGAAC 1456372 36 100.0 30 .................................... ATGAGCCAATAGAGGTATTTTCAGCTTTTT 1456306 36 100.0 30 .................................... GTGTGATCGCTGACCAAAAAGAAAAGTTTG 1456240 36 100.0 30 .................................... CATTCAGATAGCCTTCAAATTTAGTCCCGA 1456174 36 100.0 30 .................................... AAGTCTATCAAGAGCAAGCTAACGAAATGC 1456108 36 100.0 30 .................................... ATGTTATTGATGTAGATGAGATGATGGCAG 1456042 36 100.0 29 .................................... AGCTAATGGCCCTTTAGCCTCTGTCCTAG 1455977 36 100.0 31 .................................... AAGAAGCTGCTGCGGCACAACGGTTTGCTGG 1455910 36 100.0 30 .................................... AAGTTACCCTCACAGCAAAATCAGACCCTA 1455844 36 100.0 30 .................................... CTACTAATTATGCTTCAGAAATATCTTTAA 1455778 36 100.0 30 .................................... AAATAGACTGTTTTTGTTGGTGTTTCTTGT 1455712 36 100.0 30 .................................... AGGTTTTCGTTACGTTGTATAAACGTACGT 1455646 36 100.0 30 .................................... TACCATAATTATTTGAATAGGGCTGTTTTA 1455580 36 100.0 30 .................................... TTAGACTCAAACGCTTTCAAAAAAATCTTA 1455514 36 100.0 30 .................................... ACAGGGTAGTCGTGACCTTCTTCTAGGTTG 1455448 36 100.0 30 .................................... TAGTACGTCACTACACTCTGCAACAGCGGG 1455382 36 100.0 30 .................................... TGGTAGAAACCCTATGAGGTTTGACTACTT 1455316 36 100.0 30 .................................... TAACCAGCGTTTTTCTGCCATCTCCTGGTC 1455250 36 100.0 30 .................................... CAAACTAGAAAGTGGCCTGCTCATTTCATT 1455184 36 100.0 30 .................................... TCGTAGGTTTGGTATTTTATGTTACGATTA 1455118 36 100.0 30 .................................... CCGTAATTGTACGATTATTACAAGCAATCT 1455052 36 100.0 30 .................................... GGATATGTTTTAAAGGTGATAATAAATTGT 1454986 36 100.0 30 .................................... CACAATCCATTTTACATTTTATGCGTAAAT 1454920 36 100.0 30 .................................... TATTCACAAAGTTGTTGTATTCTTCTTTGT 1454854 36 100.0 30 .................................... CACATATGTATATTGATGGCTTCGAGTATC 1454788 36 100.0 30 .................................... GTCGGTGATAGTATGCCCGATTATTTAAAA 1454722 36 100.0 30 .................................... AAAACCTCTCCTACCTATTCCATCGACCTT 1454656 36 100.0 30 .................................... CCATTCCATTCATGGTTTTTGTTTCTTTGT 1454590 36 100.0 30 .................................... TCGTGCAAATTCAAGACATCTTTCCCCACC 1454524 36 100.0 30 .................................... TAGTTGTAGACATGAAGTCTAAGCAGTTCA 1454458 36 80.6 0 .........................G.G..ATT.GG | ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGACGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAGCGATTCATTATATATTGTTTTGTTTCCTTCAAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTTCATATGAGTTTATCAATAGAGGATCAAGTAGTATTAAAGATTTTAAACAAATTGTATCAGTATGAAATGAAAACAAAATTCAGTATTAAATTAGTCAATCCAATGTTATTAAAATATTTGGAAGAATAGTATTGACGAGTGAGTTTTAAGGCTTTATAATGTTTTTGAGATACAGAAACCAAAATTGACGAATTTGAG # Right flank : TTATGCTATACGAATTTATCCAAAAAACAACCACCTAAATAGGTGGTTGTTTCAGTATCTATCATTGCTTACTAGAAGAAGAACTTGAGTTGCTTGAGCTGTCGCTACTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATCAAAGAGGTCAATGGTCGATTCGCCCTTGCGTTGGCTGTAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGACATCTACCTTGCCCAAGTCATTACCCTCGTAGAAGCGAATCAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGGGTATTGGCAGCATTACGAATGTCATCCAGTTCTTTCTTGATGGTTTCGTCTGGATTGGTAATTTCCTCACCGGTTTGAGTGTAGTAAGTCCGTCCGTTGAAGCTAGTGTATTTTGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //