Array 1 243-739 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXMA01000001.1 Azospirillum griseum strain L-25-5 w-1 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 243 36 100.0 29 .................................... CCTGGAATGTGGTTGAATCCCACGCCGCA 308 36 100.0 30 .................................... AGAGAAGGAGCTCGTCGCCCTGCGCAAGGC 374 36 97.2 30 ..............T..................... GCAGAAAAAGAGCGTCGGGCCGAATGGCGC 440 36 100.0 30 .................................... AAGAAATGTGCGGAAGCACAAGACGAGCCA 506 36 100.0 30 .................................... CGTCGGCGCGCTCTTCATGGACATGGGGAC 572 36 100.0 30 .................................... TTCCACCCGGTGGCGGTCGTGACGTTGGCG 638 36 100.0 30 .................................... GGCGCTGGTCGGCATGCGCAACGCCGAGCG 704 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Left flank : GGTCGGACACATGGATGCATCCTATCGACCGTCACTACGGATTTCACTCTTGCACCGGAAGGGCCGTCCACACATGGACCCGGTCGGCGAGACAGCCGAGGTGGCGGGTTAGAGCAGATCGCGTTAAATCGGAATCGATTTCACGCGTGAATCGGCTCGATCAATGAAAGCTTAGAGCGCCGTGCTGAGCCACATTTTAGGCACAGCGCTCTAGTGCGTCAAATCTAGCGCAAAAACATTCGG # Right flank : TAGGTTCCCGGATAACGCGTTGATGCAAAACGCTTTATCCGGGAATTTTTCTGTGGGAAACCGCTGATCCAGCCCGCTACAACAGCTTGAACTGTTCGTGTTTCGCGCCGGGTTCTTCCTTTGTTCGCGCTTCCAGGCACACCATGGTCTGGTATTGGCGGTCGGTGAAGGTCAGGATTTGCACCTTTCCGCGCTTTGGCACGTTGGATCGGATGCGCCCGATTCGCGCCTCGACCTGCGGGGCACCGGCGCAAAAGCGCAGGTAGACGCTGAATTGCGACATTTCGAACCCCTCGTCCAACAGGAAATTGCGAAAATTCGTCGCTGCTTTCCGGTCGGATTTGGTCACGGTGGGCAGATCAAACATCACCATCATCCACATGAGACGATACGCGCTGAGCGCCATGCGCGCCTCCCTTGCCACGGTGAGCGGGAACGAGATCCAGCGGCAGCGGCGACAGCGGCAGGTCCAGACCCTGCCGTTCGCCCAACAACATGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 26281-25520 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXMA01000021.1 Azospirillum griseum strain L-25-5 w-1 Scaffold21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26280 29 100.0 32 ............................. TTAGCGCATTTCTTTGCCTCACCCCCTTCACC 26219 29 96.6 32 ............................T GGCTAAGCAAGTCGCCGCGCAACAAGACCCTA 26158 29 100.0 32 ............................. GCTGTTTGCGTAGTCTTGAAGCGCGAAAGCCA 26097 29 100.0 32 ............................. GTGAAGGGGATGGACACGCTTTCGCCATCCCA 26036 29 96.6 32 ............................T GTTTATCGCGGACAGGCGACCACCGTTTTCAC 25975 29 100.0 32 ............................. GCCCGGAGCGTCATCGGGTATTATCTCACGTA 25914 29 100.0 32 ............................. CTGAGAAAGGCAGGCCGGAATATTCCCCTTGC 25853 29 100.0 32 ............................. CGCTCCGACGGTTCCAGCCGGACCCATTCGGA 25792 29 100.0 32 ............................. GGGTCCGGCGGGCTTTGGGCGCAGTTCTCAAC 25731 29 100.0 32 ............................. GGCGTTGCGGACCTTGCAACACCCCGCGCAAC 25670 29 100.0 32 ............................. ACCTCGGAAAACCGCGTCTTGTTCTGCGATGC 25609 29 96.6 32 ............................T TGGGTGAAGGAGGCGGAGTTCTGGTTCCCCGG 25548 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTTTCCCCCACAGGCGTGGGGATAGACCC # Left flank : CACCTCCCCCAACCGCCAGGCGTACAGGCGGCGGGCGATGGACAGGCGCGCGTCGGCGTCGGCCCACACCCGCGCCTGCCGCCGCGCGACGCCGCTGTCGTCCGCGCCCAGCGGCGGGGCGGTGTAGGCCCGGACCCCGTCATCCCCCACCGCCGCCAAGCCGGTGCCGTGGCGCGCCATCAGGCGCAGCGCATCGTGGCTGACCGTGCTGCCCGGCCCCAACAGGATCAGGCTGATGCCCTGAAAGGGAATGTCGTAACACCCGGCGGGCAGGTCCGGCCCCCCGGCGGTGGCAAAGCGCAGACAGCCCCGCTCCACCGTCAGCGCCCCGCGCGACAGCCAGATCAGGCCATGGCGATCCGCGTGCGGCACCCGCGCCGTCTCCAGCCCCAACCGCCCTTTCAGCATGAATTTTCTGCTCGCAAAAGGAGAAGCCCTGCGATATTATTCACCCGTCGGATCTTGAACAAGTGAATTTTTGCAGAGAGTTAGAGGAGAGA # Right flank : ATTGCCGCCGCGCCGACGCATCCACGGTTCGGCTTGACGGCGGTGATTGGCTTGCGGTTTTGTTCGGGGGATTGTGGAGAGGATGGTGTCATGGTCCCGTGGCTTGGCCGCTTGTGTCTGCTGGTTGGGCTGCTGCTGCCCCACAGCGCCCCCGCTGTTGTCATTCTGGACAGCACATGGCGGGAGGAGGGGGGCCGCCCGGACCGCGAGAACGCCGGGTTCGGCGCGCACATCCGGTTGGCGCAGGAACCGCAATTCCGCTCCGTGCTGTCCATTTCGCTGGATGGGGGGACCAGTTGGGGCGACGGCTCCGGCACCTGGATCGGCAACGACGACCGCCACGCCTACATCCTGACCTCCGCCCACAATTTCGACGAGACGGAGGTGGAGGAGGCGCGGTTCCGCACCGACGACGGCACGGTGCTGCGGGCCGATCGCCTGTGGATTCATCCCGATTACGATTCCAACGACGATTGGAGCGGGCGCGACGCCGCCATCGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCACAGGCGTGGGGATAGACCC # Alternate repeat : GTTTCCCCCACAGGCGTGGGGATAGACCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 35569-36084 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXMA01000021.1 Azospirillum griseum strain L-25-5 w-1 Scaffold21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35569 28 100.0 33 ............................ CACGGCGCTGTACCGCTATCTCGCCGAGATGGC 35630 28 100.0 33 ............................ TCCTCGTCCGATTTCCAAACCATGGTGTCTCCG 35691 28 100.0 33 ............................ CCACCGGCGGACAGCTCTTCAGCTACACGGTCA 35752 28 100.0 33 ............................ CTGGTCGGCCTCTCGGCTGATCTCGCGATCTGT 35813 28 100.0 33 ............................ TGTGCTGGTTGATTGCGGTGTCGCCGGGGGCAA 35874 28 100.0 33 ............................ TTGTTCGGCAAACGGCTTGACCTCAAACTCCGC 35935 28 100.0 33 ............................ CTCCACAGCCTCGATGAGTTCGTCTCTCGTGGG 35996 28 100.0 33 ............................ CTGGATTTCCCCGAAGTGCCGGAAGCGGACGGC 36057 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GTTTCCCCCACACCCGTGGGGATAGACC # Left flank : GGCTGCTGGATCGGCAGGCCATTTACCGGGATTGGCTGCTGGCACACCTGCCCGGCGCGGCGGTGCTGGATCTGCGCCTGGACTCCCTGCGCCAGATCAGCCTGACCCGCCGGGCCGCAGCGGTTGGGGACACCCGCCCGCTGAGGTCCGTCCGCAAACCGGACGCCCTGTTCACCGGACGGCTTCAGGTGGCGGACAGCGCCCAGTTCATCGACACCCTCACGCGCGGCGTCGGACGGCACCGGGCGTTCGGGTTCGGCATGCTGCTGCTGCAACCAGCCCGCTGAAAACCAGCCCGCTGAACCGCCGGGCAAACCGTTTGGCGACACGCCTTGCGCAAGAGTGGTGGCCGGGACCGGTGCGCATCACCCATCCCGGCCCCACCCCGGCACCGCGTGACACGTCACACAACAATCCTCTCGCAAAAAGGGAAAACACGGCGTATTGTTCACCCAAGGAATCTTGGACAAGTGAATGTTTGCAGGGAGTTACGGCACAGA # Right flank : CCCTGGGATCCCTCGGCATGGGCTTGCGACATGGCGCGCCACGGCTCATCATTGCGCGTCGCGCGCAACGGCCCCCCATCGGTCGACCGTAAGACCCTGGGGCGGGGCGACGCGGCTACCGTCGCCGGGGGATCCATTTCCCATCAGGTCGTGCAGCAGAGCCGACGCGCTGTGGGGTTGGGGGTGGGCAAAACAGCCCCGCTCATCACCCCTCCGCCGTCAACCGCAACTCCATCCGGTGCACATACCGCTGCCCTGGATCCAACCGGGCGGTTGGGAAAGCGCCGATGTTCGGGCTGTTGGGGAAGCGCTGGGTTTCCAGCGCAATCCCGGCGAAGGGGCAATAGGCTTGGCCGCCCTTGCCGATGATCGCCGCGCTGAGATAGCCGCCGGTGTAGACCTGCAAGCCCGGCTGGTCGCTCCACAATTCCAGGCGGCGGCCCGAGGGCGGGTGTTCCAACCGCGCCACGGGGCGCACAGCGCCGGTGCCGCCATCCACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCACACCCGTGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 66719-66265 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXMA01000013.1 Azospirillum griseum strain L-25-5 w-1 Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66718 28 100.0 33 ............................ CCCGACGCATACGACAGCGTGATGGCGGAGATT 66657 28 100.0 33 ............................ TCAGTTGTACGCCGACTTTGAGGAATACAACAA 66596 28 100.0 33 ............................ CGTCCAGGGCCATCGACTTGCCCGAAATCGCGC 66535 28 100.0 33 ............................ TCTGCCGGTTCGGCGGGCACGTCCGGCAATTCT 66474 28 100.0 33 ............................ CGTGCCGATGTCGCTCTTCCTGGGCTTGGCGTC 66413 28 96.4 33 ............G............... TGGAAAAGCCGCCACCTGTAGAACAGGTGACGG 66352 28 100.0 33 ............................ TTAGGCAAGACAGACACAACCGACGCGCGTCAT 66291 27 78.6 0 .C...T..-..............GC.G. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.9 33 GTTTCCCCCACATGCGTGGGGATAGACC # Left flank : GCGGGCCGTATAGGCCGCCTATATGGCGCGCGCCCGGCGCGCCCTCTCGTTTCTATACGGGGATCGGGGCTTCACTGGTGGACACGCGGCGCGGGCCGCGCTGTCACGCCGGGGAGGTTGCCATGCTGTCGAACATCCAACGCGCGCCGCTTGGTCGCCGGTTGTTGGGGGGCCGGTTGTTGGATCGGGGCGCGCCGGACGGGCGCTTGCCCGGTCAGGGCGAACCCGACCAGGAGACCGTCCCGCCCACGCCGGGCGCGGTTGTGGTTGAGATGGCGCTGACCCTGGCGGTCTTCTTGCTGATCGCGTTGGTGCTCCATCAACTGGCCGACCGGCTGATCGGGTGACGGCCCCGGCGGGTTCACCGGATGCCCCGCACCGTTGCCCGTCCGCACCGACCATGCGTCTGGAAATTCCTCTCGCAAAAAGGGAAAGCATGGCGTATTGTTCCCCTTGTGGATCTTGGACAAGTGAATGCTTTCAACAGGATACAGCACAGA # Right flank : GTCGTGTGTGTTCAGGTTGGCCGCCCTTTGCGGAGCGTTCGCGGTCGCTCGCCTGACCATTGGGTATATACGCCGCCTATACGCCGGGCGGCGCTCTCCCCCTCTCGAATCTATACGCGCGGGCGGCGCATCGTCGGTGGATCGGACGACCGGCATCCCAGCGGGTGCGCGGGCGTTCCCATCGGGAGACGATTCATGCTCGACCTGCTCGTTGTTGCGATCACCCTCGGCTTTTTCGCCGGGGCCATCGCCTATGTTCACGCCTGCGACCGGCTGTGAGGGGGGCAGCCATGACCTTCGATTGCGCGCTGGCCGGTCTCGTGACCGCCGGTTTGCTGGCGTATCTCGTCTACGCCCTGATCCGCCCCGAACGGTTTTGAGGAGTTGATCCGATGACCGTCAATGGCTGGATTCAAATTCTGCTGTTCATCGCCCTGGTGGTCGCGGTCGCGCGGCCGCTGGGCGGATTCATGACCCGGGTCTTCACCGGCGGGCGCACC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCACATGCGTGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //