Array 1 298283-300307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABLD010000001.1 Moraxella catarrhalis strain AS012765 AS012765_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 298283 28 96.4 31 ...........................T TTGCGTGAGTCAAGCTGGGTGTCTAGTCAAA 298342 28 100.0 32 ............................ TTGCCCTTTGACTTCACAACCCTAACATCAAC 298402 28 100.0 32 ............................ GATGACAATGTCGTCATCAGCGTTTAGTTACA 298462 28 100.0 32 ............................ TACCCCAAAAAATCATCGCAATCAGCAGGCAA 298522 28 100.0 32 ............................ TCAGGGCGAGATGCAAGCCCTCCGATGGCTTC 298582 28 100.0 32 ............................ CAAAAAAATCACCCAGTATCACCCGCTCACCC 298642 28 100.0 32 ............................ CATAACTTGTACTGATGCACCATTATCTTTTA 298702 28 100.0 32 ............................ GTCGCATCAAAGCTTGCGTAGTTTTCACGGCT 298762 28 100.0 32 ............................ AACTTATGTTGTTGAGCGTGGAAAGGGCAACT 298822 28 100.0 32 ............................ TAAATTTCACTTACTACAAAAACAAAAAGGGA 298882 28 100.0 32 ............................ ACCCCAAGATGTAGATTTACCCCTTGCCACCG 298942 28 100.0 32 ............................ AGTATAGTGATTTTCGCCATTGACACACTGGA 299002 28 100.0 32 ............................ GCTGATGACAATCACCAATTTACCATCACCGC 299062 28 100.0 32 ............................ TGTGCGAAAATCCACCTTGACATTTGGAAAAT 299122 28 100.0 32 ............................ ATTCATTGCCAAACCTTTGATTGGTACAGTCG 299182 28 100.0 32 ............................ CAGTCGAATTCACCATGCCAAACGCCATTTTC 299242 28 100.0 32 ............................ ACGGGCGAAATTCCACCCCAAATTCATGCCAA 299302 28 100.0 32 ............................ AATCAAAAATTTTTGACGACTTATTTTTTTTG 299362 28 100.0 32 ............................ AGCGTATCAACACCTTGCAAAGCGACTATAAC 299422 28 100.0 33 ............................ ATTGTGGGTTAATGTCAGATTTTCCCTTGAGTT 299483 28 100.0 32 ............................ GTATTTAATTTCTACAACTGCGCCTGATAATT 299543 28 100.0 32 ............................ CTAAATTCATGCCAAATAATACCCCCTGTACG 299603 28 100.0 32 ............................ AATCTTGAACGAACGCTAACAACAAACAATCA 299663 28 100.0 32 ............................ GCTCAACACTTGTCGCCTGTCTGCTTTGGGTT 299723 28 100.0 32 ............................ ACAGTTCATTATTACCACCTGTGCCGACATTC 299783 28 100.0 33 ............................ TCCTTCAAAAATAGCGAAAATAAGCGTTTTAGC 299844 28 100.0 32 ............................ TTGATACACAAAACATGTCTATTGTACTTTCT 299904 28 100.0 32 ............................ TTGTATCTGTGTCAGATTTGAGTGCGTGGCTA 299964 28 100.0 32 ............................ TTTCGCAATAAGTTTGGCGAATATATCTCACT 300024 28 100.0 32 ............................ AAATCAAGCCGGTGGTGTTGATTTAGTGAGCA 300084 28 100.0 32 ............................ AGCGATTGAAAGTAATATTAATAGCTTTAATA 300144 28 100.0 48 ............................ ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA 300220 28 96.4 32 .............T.............. TTTGGTGATTACAAGCTACCGTCCGAATTTCG 300280 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================================ ================== 34 28 99.7 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TCGCATTGCGGCTTGGGTGATAGATGTCCCTGTGCCAAGCAAGATGACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTCGTATTTGGTTTCGGTGAGATACAGGATGCGCCCGTCTTTTTGCATGACTCGGCAATACTCAAGATAAAATACATTGGCGCGCTTGGAGTGCAAAATTGCCTTAAGATCCGTGGGTTTGAGCGTATTCATGACGTCAATTTCCTTAATGATGAATTTAATTTAATCACACCCATTATAGCCTGTCAAGCGATGATGCGACCAAATTATAAGCTTATAGTATCCATCTGCCATATCAGTTATGCTATACTAAATTTGCCATCAGATGATGATGGGTGTAAAAAACCTTTATTTTTTCAACTATTTAAAAACTTAATAAAATCAATAAGTTATAACTAGTCAACTTTTGATTGGATAAAAAGGGTCAATCCATCATAAATGGCTGTTATTTCTTAATTTTTTCGGTTATAATTACT # Right flank : AAACTCGGCAGCAATACCGCCAAGACATGTAGGCTTCACGACCGCATAGGTCGCTTAGAAAAACTCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTAGGCTTCACGACCGCATAGGTCGCTTAGAAAAGCCTGAGCTTGTCGCTGATGTGCTTAATCACCTTCACGACCGCATAGGTCGCTTAGAAAGACGCAAAGATTGCAATCAGATAAAACAAAAACTTCACGACCGTGCAGGTCGCTTAGAAATAATCTTGAACCTATTTCATAAATAAACGGCTCTTCACGACCGCACAGGTCGCTTAGAAAAACTGTGTTAATCCGCTCAGACAAGCTTTGATTCTTCACGACCGCATAGGTCGCTTAGAAACTTACAATTTTTTTGTCAAAATGCTGCATAACTTCACGACCGCATAGGTTGCTTAGAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 300478-300805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABLD010000001.1 Moraxella catarrhalis strain AS012765 AS012765_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 300478 28 100.0 32 ............................ AGCCTGAGCTTGTCGCTGATGTGCTTAATCAC 300538 28 100.0 32 ............................ GACGCAAAGATTGCAATCAGATAAAACAAAAA 300598 28 89.3 32 ...........TGC.............. TAATCTTGAACCTATTTCATAAATAAACGGCT 300658 28 96.4 33 .............C.............. AACTGTGTTAATCCGCTCAGACAAGCTTTGATT 300719 28 100.0 31 ............................ CTTACAATTTTTTTGTCAAAATGCTGCATAA 300778 28 96.4 0 ..................T......... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.0 32 CTTCACGACCGCATAGGTCGCTTAGAAA # Left flank : AGGTCGCTTAGAAATTTCGCAATAAGTTTGGCGAATATATCTCACTCTTCACGACCGCACAGGTCGCTTAGAAAAAATCAAGCCGGTGGTGTTGATTTAGTGAGCACTTCACGACCGCACAGGTCGCTTAGAAAAGCGATTGAAAGTAATATTAATAGCTTTAATACTTCACGACCGCACAGGTCGCTTAGAAAACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAACTTCACGACCGCATAGGTCGCTTAGAAATTTGGTGATTACAAGCTACCGTCCGAATTTCGCTTCACGACCGCATAGGTCGCTTAGAAAAACTCGGCAGCAATACCGCCAAGACATGTAGGCTTCACGACCGCATAGGTCGCTTAGAAAAACTCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTAGG # Right flank : ATTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCATCGAACAAACCACCATGGAAGAGATTACGGCTGAGGCGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCATCGTGGCCGTGGGTAATGTCGGTGATGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //