Array 1 979875-981184 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU015342.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00007171 isolate AUSMDU00007171 chromosome C1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979875 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 979936 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 979997 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 980058 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 980119 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 980180 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980241 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980302 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980363 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980424 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980485 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 980546 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 980607 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 980669 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 980730 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 980791 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 980852 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 980913 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 980974 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981035 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981096 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981157 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997316-999280 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU015342.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00007171 isolate AUSMDU00007171 chromosome C1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 997316 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997377 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997438 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997499 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 997560 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 997621 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 997682 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 997744 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 997805 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 997866 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 997927 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 997988 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998049 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998110 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998171 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998232 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998293 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998354 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998415 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998476 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 998537 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 998599 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 998702 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 998763 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 998824 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 998885 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 998946 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999007 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999068 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999129 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999190 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999251 29 96.6 0 A............................ | A [999277] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //