Array 1 1696-2447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCZ010000003.1 Clostridium botulinum strain BirminghamE-KM30-1 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1696 30 100.0 36 .............................. AATATTTTGATAATTGGCACTCCTAAAGCTTTTTCT 1762 30 100.0 36 .............................. TTCCTTTCATATTTTGTATCCGATTCGGACACAAAA 1828 30 100.0 35 .............................. CATAAATTTCTTAATGATTGTACAGATGATTTTAG 1893 30 100.0 36 .............................. TAATCTGCTCCATTCATTGCATCACAAGTTGTATCC 1959 30 100.0 35 .............................. AGTAATAAAGCAGCAGTTCTGTATTGTGAAGTCCT 2024 30 100.0 37 .............................. TTATTCTTTTATCCTTTCTGACTACCAACTTTCATTT 2091 30 100.0 34 .............................. GCAAATAAAAGGAATATAAAGGGATAAAGAGTTA 2155 30 100.0 36 .............................. GTTTCTTTAATAATTACATCTTCTTTTGATAAAAAT 2221 30 100.0 36 .............................. GTTTCTTTAATAATTACATCTTCTTTTGATAAAAAT 2287 30 100.0 36 .............................. CTAGAGCACATATTTATATCTATTTTATAATCATAA 2353 30 100.0 34 .............................. TACTGTCTACACCTTCTAGCTGTAATAATTACAG 2417 30 90.0 0 .................T.....G.....G | G [2444] ========== ====== ====== ====== ============================== ===================================== ================== 12 30 99.2 36 GTTTAACCTTAACATGAGATGTATTTAAAT # Left flank : AAGGCAGAGAAGAAGGAGAAAAAATTAAGGCGCTAGAAATAGCAAAAAATTTACTAGATATCTTAGATAATAAAACAATAGCAATAAAAACTGGATTAACAGAAGAAGAAATAGATGCTCCTAGAAAAAAAGAAGTTAATTAGTGTTTTTTAAAAACATTTAAGATTTAGTTATCCTTGACAAAGTATCCCATTTAAAGAGTTATAATGATTTTTTTAATTGTTATAGCTCTTTATTTTTCTCCAAAAAATACAGATATTAAGCTCAAATTTACTTTAAGAATTGTAAAAATAAAGTAAGTTAGCTATAATATTAAGCATTCTATTTTACCAGCCATAAATTTATATAAAACACCTTAATCCATTGAAATTACAGAGCTAAGGTGACCTTTAAAAATTTTTATTAAAATTTGACAAACGGCTGGGAAAGTTTCCTTCAAACCTTGAAGTTTCAATGCCTTAGTGGTATTATTGATTTTAGAGAATGAGGATTTTACTATG # Right flank : GAAAAGGGCATGCTAATAACTAATAGAATGGCTGCAATGATTGGTTCATTGCAAGAATAAATATTAAAATGTATTATTGAAATTGTTTATATATAATGGGGGAAAAAAATGACTGAAATACAAATGTGGAATGAATATATTAAAATTAATACTAATGCAAAAGAGTATCAATCATGGTCATTTGGTGGAAATACACCTGAAATGCCAAATTTGTTGGCTGAATTAGTATTAAAGGGGATTAAAACTGCAACTGCTAGTGCATATCCTTGTTATATTGCAGAAAATGCTCCATTACCACCAGTTGGAGGATATAATTTGATATTAAATACAAAAGGTGAGGCTATTTGTATCATAGAAACTACAAAAGTATATACAATACCATTTAACCAAGTTAAGGAGGATCATGCGTATAAAGAAGGTGAATTTGATCGTACACTTATATCTTGGAGAAAATGTCATTCTAAATTTTTTTCTATGGAATTAAAAGAGATTGGTCAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 670-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCZ010000011.1 Clostridium botulinum strain BirminghamE-KM30-1 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 669 30 100.0 35 .............................. AGAGATTACATTGACTTGGTAGAGGAATATTTAGA 604 30 100.0 35 .............................. AAATATTTTACAGATATATCAAATATTATTTCATC 539 30 100.0 37 .............................. GGAACCTTATTCCAATCTCCAGTAACTCTTTGTTTAG 472 30 100.0 36 .............................. GGATTTAATAACTTGTCTTTTGGAGGTTCTATACCT 406 30 100.0 36 .............................. GGTACATGTAATGTTTAATCCAGTTAGCAAGTCTAA 340 30 100.0 36 .............................. GTGACTAACCTATTAAAGAATCGTGATGCTATTCTT 274 30 100.0 36 .............................. ACTAATAATGCTAAGGATTGTATGAAAAGTAATTAT 208 30 100.0 35 .............................. ACTTATAATTTTATCTCAATATGTGAAAAATTTTC 143 29 76.7 0 ................T-..AA..G.C..C | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.4 36 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : GAGTTTTTACTTTGGATTTTTTATATTTTAGAGGAATAAAATATAATATTGATTAGATATTTTAGATAATAAAACAATAGCAATAAAAACGGGATTAACAGAAGAAGAAATAGATGCTCTTAGAAAAAAAGAAAGTAATTAGTGTTTTTTAGGAACACTTAAGATTTAGTTATACTTGACAAAGTATCCCATCTAAAGAGTTATAATGATTTTTTTAATTGTTATGGCTCTTTATTTCTGTTTAAAAAAATATAGATATTAAGCTCAAATTTACTTTAAGAATTGTAAAAATAAAGTAAGTTAGCTATAATATTAAGCATTCTATTTTACCAGCCTTAAATTTATATAAACTCCCCTAATCCATTGAAATTACAGGTCTAAAGTGACCTTATAAAATTTTTTTCAAAATTTTATAAACGGATGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGGGGTATTATTGATTTTAGGGAATGGCTATTTTACTGTG # Right flank : CCTATGAATGTAAGTTTTCGATCATTTAAGAATGTAGTTTTTTAATCTTCGTCTTGCTTAAAATGATCTTTTAGTCTATACGACTTTCCATTAATTGTAACAACGTGAGCATGAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //