Array 1 13092-14733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHL01000025.1 Mesotoga sp. BH458_6_3_2_1 contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 13092 30 100.0 37 .............................. TGTAGAACTGGGACATCTCATCCGTCTGCGTTTGAAT 13159 30 100.0 37 .............................. TATAATGCCACTTTGAAACGGCCAACCTTGGCTTCAG 13226 30 100.0 39 .............................. GGTTACGGTCTTGAACTCGCCCTCCCATAGAAAGCTCCA 13295 30 100.0 37 .............................. CTAGAATACAGCTTTGACAGAATTTTCGCCTTGACCA 13362 30 100.0 35 .............................. TTATATCGTTCCATCTATCACCCTCGTTCAACATC 13427 30 100.0 37 .............................. GTTTCTCTGCATCTGCAGCCAGCCTTTTCATAAGATC 13494 30 100.0 35 .............................. ATAGCAGATATTATCTGATCATTATGTTCATTTTG 13559 30 100.0 39 .............................. ATATGATCTCGGAATACTCGGAACGAACCGAGTCTCCCT 13628 30 100.0 36 .............................. GCTAGATCTTCATCTATGTAACACCACTCCGAGAAG 13694 30 100.0 39 .............................. GCCATCGCAAGCACTTTTTCTCTCGATTTATCGACGTCG 13763 30 100.0 37 .............................. AGAGTACAACTCAAGGAAGTAGACCATTGCCATTAAC 13830 30 100.0 37 .............................. GAGCTTCATCATCGTGAGGTTGTGCTTGTTAATGTAA 13897 30 100.0 36 .............................. GCCAATAAGTTTTCTAATTGCGTTCTGCTTTTCGCA 13963 30 100.0 40 .............................. GAACTGAGGACCTTGGAGTCCGCTATCCCTAACATCTTGG 14033 30 100.0 38 .............................. TCTTTGCTTTCTTCTCTGGGGTCATCATACTTACCCCT 14101 30 100.0 34 .............................. TATGACCCATTCGCAATACCAAGTTCTTTTGTTG 14165 30 100.0 35 .............................. AATGATCAGGACTTACGCCTATGGCTCAAGAGGGT 14230 30 100.0 38 .............................. ATACCACTCGAGGGTAAAGACAGTGTCTTTACCACTCG 14298 30 100.0 39 .............................. TTGAAGTCCAACCGTATTCTATGTATGATGATTCTGTGT 14367 30 100.0 36 .............................. TTAAAGTAACTGATAATAATATACGTACGTGTTATG 14433 30 100.0 40 .............................. GAACCAAAAGCGAGATGGCAGGGAAGTCACACGCGGCAGC 14503 30 100.0 38 .............................. CCCTGTTCCAAAACAAACTTCCTCGCTCTTTCTTCGTC 14571 30 100.0 37 .............................. ATGTATGATGATTCTGTGTCCGTCCTTAGTTTCAATA 14638 30 100.0 36 .............................. TTTTGATAGTAGTATTTCTGCTTCGTAACTCGCTCC 14704 30 90.0 0 .........................CT..G | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 99.6 37 GTTGCGTAAGAACCATAGTGGTATGGAAAC # Left flank : TCTTTCTGTCGGATCTCATTACATACAGTCTGGTTTGGCAAACCCCATATTTCAGATCTACTTTATCCGCTTTTCTGAATCCAGTTGTATTATGCTCCTATAAAACATTACCCGACTTAATAATTTCGTTACCGGCTCTCGTCGGATCATTCGTATACCATTTTCCTCTAAACTCATTTCTCAATAACACTTATAAACTTATTTAGAATCATTCTTGTACAGTTTACATAGATCCGACTGTGGATAGGTCATTTGATTGAAAGCGAAATCGAGAGCAGTTTTCTTCTGTAAACTTCTGTTGAAAGGTGTCTCCCAGGATTTTAGACAAATGACCTTTCTTAGAAGATGCGGGCCAGTTCTTCATACGGAAAACAATCACGATTTCTCGAATCGAATCCAGACAAATCTCCAAAATACAGAAAGAATAACTCTTGTGAGAGCTTTCCGTTCATTTGATTCCGCCTGCCCAAAACCTGTATAATATCTTTATAATAAAAGCG # Right flank : GAGCCGTTGTGGGTGGTTCGTGGTTGGTGGTTGGTCAGGAGCAAAGAACAAGAACTAGATCTAGTTAATTGTGACTGAGGAAGGCTATTAGATCAGAACCAACACAGCTTGTCATCCTGAAAAGCTCCTGTTCAGGATCTGATCTTAGATCCTATCGGTGAACCGGTCCATGATCTGGGAGGATCAATGAAGGACGACTTTCATTAAACCGTTTCCTCAGTAAACTCGGTATTTGAAATACTCCTGCCAATTTCGATTTGCTCTCTATCTTCATTAAACAGCGATCTTTTGAAAGACAACTAACCATGCGCTGAGATCATTCATTTTTCAAGAAATGAGGCAGGAAGGATCTCTCTTCCTTCCTGCCATTAGGGTGTGTGAGTAGTGCAGTTCCAAGTTCTGTGTTGCAAGTTGTTAGTTGAAAAAATCGTTGTCGGTTGTCGGTTATCCGTTTTCCCGGAAGACCCGGCGGTCGCAGAAGAGCCCGCTACCTAGCTATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTAAGAACCATAGTGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 24869-24166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHL01000014.1 Mesotoga sp. BH458_6_3_2_1 contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24868 30 100.0 37 .............................. CCGAAGAGATCACCCGCAGATAATTTCTCATTCTCAT 24801 30 100.0 37 .............................. TATACACGAAGCTAGCAGTATCGTTAGAACCAGCCAC 24734 30 100.0 35 .............................. TTGAGAAAAATCATTGTTCTACCTCCAACACATAC 24669 30 100.0 37 .............................. AAATTGGGACAATCCTCAGCAATTCCCCATTTGACTT 24602 30 100.0 38 .............................. ATATTTGATTATAAATAGAAAGCCATACCGCACTACTT 24534 30 100.0 39 .............................. ATTCTGGGGGTTCTGGTACAAGGAAAATATGAGTTATAG 24465 30 100.0 38 .............................. TTATACCACGCAGCACGAATTCTCTGTCCTTTACCTTG 24397 30 100.0 36 .............................. CTTCCTCTGGCAGATCGGTGTCCCGCCATGTCAGGA 24331 30 100.0 38 .............................. GTAGGGTATGGATACGGTATTGATAGGGTATCAATAGG 24263 30 100.0 38 .............................. AGCCTATACGCTTTCTTATTAAATACTAAAATCATATT 24195 30 96.7 0 .......G...................... | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 99.7 37 GTTGCGTAAGAACCATAGTGGTATGGAAAC # Left flank : CCTTATTGTCGGATCGCATTACATAAAGTCGATTCTGTTGAAGTTCATATTGCGGAGTAAAGTTATCCTATTTTATTGATCGCACTGAGTTGTCCTTCCATAAAGCTTTTTACGAGTTAATAATTCCGTTACCGATCCTTGTCGGATCGATCGTGTACCATCTTCTCCTGAACTCCTTTGCTAATAACACTTTTAAACTTATTTAGAATTATTATTGCACAGTTTACACAAATCCGACTGAGGATAGGTCATTTGTTTAAAAGCGAAATCGAGAGCAGTTTTCTTCTGTAAGCTTCTGCTAGAGAGTGTCTCGCCGGTATTTTCTGCGATCGGTCTTCCTTAGAAGATACCGACGCCTTCTCTCTCCACTTAGCACTGAGTCCATCATAATCAAATCTAGGCGAATCGCTGAAATGCAAACTCGATGTTGCTTACGAGATCTTTCCATTTGGTTGATTCTGCCTCCCCAAAACCTGTATAATATCTTTGTAATAAAAGCG # Right flank : CGCCTTGGACTCGTGCTGTTTGGTGTTCGATATGCGGTCCCCATATATCCTTGAAGGTATCTAAATATGAGCCCGGTTATGAGTGCGAAGGTCGAGTGCCGGTCCCCATATATCCTTGAAGGTATCTAAATTGTAAAAATGCACGACAAGAGGGGCTGGCTTTTAGCGTCCCCATATATCCTTAAAGGTATCTAAATCCAATCAATTCAATACAGCTCAAGAAGGAAAATCCGCAGTCTTTTTCATGAGCGAATTTTTGGTTTTTCTAGGAATCCCAAACAACTGTTTTTTGGAAAGTAAGCAGTACATTATTTGGCCAAACAAAATCCAGAACCCATAATCAATCGCTTACCCTTAATGTTAGGATGCTCCATTCTGCTATTTCTTCCAGATAAGCAATCAAAGAATGTTATTTGCAAGAGTGAATTTCCTGTTTTTGCAAGAATTGCAAACAACTTTCCACCAGGAAATTGTGTTAAGGAGTTTTCATTAGCCAATTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTAAGAACCATAGTGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 46738-48603 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHL01000014.1 Mesotoga sp. BH458_6_3_2_1 contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================================================================================================== ================== 46738 30 96.7 39 ......................T....... TTAGTGTTCGGCCCCGATCAGGACCGCCTGATCGAGGCA 46807 30 100.0 36 .............................. AGATCACCGAGCACCTGCCCGACGACATATATATTA 46873 30 100.0 38 .............................. TGGTGTCTTCTATGATATGAGGCTTACTCCTCATGCAA 46941 30 100.0 36 .............................. GCTCCTTGTGAATTATCCTTTGGACTTTTCAAAACT 47007 30 100.0 37 .............................. CTACGGGCGTTTAAAAGGTTCAAAAATTTAACTAAAA 47074 30 100.0 38 .............................. TATCCTGTTGATGTTCTTGAATTTATCGTGTTAACACA 47142 30 100.0 36 .............................. GAACCCGAAAGAATCGTTCCTGTTGTCATCGCTCAA 47208 30 96.7 37 ......................T....... GGGTGACATCCGCATCAAGATGAGTGCTCGCCTCCAC 47275 30 96.7 36 ......................T....... ATGAGGCCATAGATCCTGAAACTATGAGCCTGTACA 47341 30 96.7 38 ......................T....... GAAAGTTTACTATGTGAAAAACATTGCAAGATTTGCAC 47409 30 96.7 40 ......................T....... TCGAGGTCGAGTACGAGGACCTCGCCACGTTGCTCGATAA 47479 30 96.7 37 ......................T....... TCCACCAGGCGATTCCAAGATTAACAAGAGTAGACAC 47546 30 100.0 38 .............................. CAGAAAAAAGTAAGTATTTACATTGCTGGAGATTGTGT 47614 30 96.7 35 ......................T....... AACCCTCAGGAAGAAACTAACCTGTGTGTCGCCAC 47679 30 96.7 39 ..C........................... TTTGGGTAGAAATAGGGTTCAACGGACTAAGTGTATTCA 47748 30 100.0 36 .............................. AAAGTTTGCCCTGGCGAATACTTGTGTGAAAGTTGC 47814 30 100.0 36 .............................. TAGAGCTACCGGATTAGTTATTACCATAACACGTAC 47880 30 100.0 38 .............................. CCATGATATATACGTCCCGAGCAAGACGTAAAACTGCT 47948 30 100.0 35 .............................. GAAAAACCGGTGCTGGAATACCTCGGCCAGAACGA 48013 30 100.0 34 .............................. GGATTCCGAACGGGCAAAATACATCAACAACAAA 48077 30 100.0 37 .............................. CATAATGTAAGCACAACAGCAATCAGCAAATACATTA 48144 30 96.7 37 ......................T....... CTACTATCTCGACAGTTACCTGCAAAAGAAATTTGCT 48211 30 93.3 36 ......................T..A.... CTGTTGACGTTACCCTCGAAGACGGTATCCATTTGT 48277 29 90.0 195 ........................A.-.G. CGTCCTCCGTTGACCGTCCAAGAGCATGGACCCGTCCTTCGTTAAGATCAAAGACCAGATCCTGAACAGGAGCTTTTCAGGATGACAAACTGAGTTGGTTCTGATCATATTGCTATAATTTGCTTCTTGAGGATAGGTCAGGCTCTAGTTTTTTGCTCCTGACCAACCACCAACCACGAACCACCCACAACGGCT A,A [48298,48300] 48503 30 83.3 40 C..AG.................T..A.... TAGTCTTCAAGTTAGCAGAAATCCATACGATGATCCAGCA 48573 29 90.0 0 ........................A.-.G. | A,A [48594,48596] ========== ====== ====== ====== ============================== =================================================================================================================================================================================================== ================== 26 30 97.2 43 GTTTCCATACCACTATGGTTCTCACGCAAC # Left flank : CTCTTCGGCGCATCACTTCCCGGGATGATCTTCCCGGCACAGCGTCCTGCCGAAGGCAGCAATTCATACCACTATGGTTCTTACGCAACGGTGATGAAATGAAGATCTCCACACGGAAGATGACCTAGTTTCCATACCACTATGGTTCTTACGCAACGGGAACAGGTGGCAAAGATGACTCCGGAGCAGATCAAGTTTCCATACCACTATGGTTCATACAAGAGCAGTCCTCCGTTGACCGTCCCAGAGCATGGACCCGTCCTCCGAAAGGATCAAAGACCAGATCCTGAACAGGAGCATTTCAGGATGACAAAATAGTTGGTTCTCACAGCCTAACATAATGCCCCTTGAAGGATCTTTCCTCCTGGCGAAGCCAGCCATGCGTCCCCGGATGCTTTTCCGGGCATTGCGTCCGCCGATGATCCTCGGCGCATCACTTCCCGGGATGATCTTCCCGGCACAGCGTCCTGCCGAAGGCAGCAATTAGCCATTCGGTCATC # Right flank : CCGTCCTCCGTTGACCGTCCAAGAGCATGGACCCGTCCTTCGTTAAGATCAAAGACCAGATCCTGAACAGGAGCTTTTCAGGATGACAAACTGAGTTGGTTCTTAAAACTTAATGTCTTGCTCCTAGAAGGGTTTTCCCTCCTGGCGAAGCCAGCCATACGTCCCCGGATGCTTTTCCGGGCATTGCGTCCGCCGATGATCTTCGGCGCATCACTTCCCGGGATGATCTTCCCGGCACAGCGTCCTGCCGAAGGCAGCAATTCATACCACTATGGTTCTTACGCAACCGGAAGAAAACGTTGTATACATTGTGTCCTCCCGTTTCCATACCACTATGGTTCTTACACAACAAGTACTTCATACATTAGTTTACTCTGTTACCTATAAGTTTCCATACCACTATGGTTCTTACACAACACCAATCAGACGAGACCGGCCTGATATTCTAAACGTGTTTCCATACCACTATGGTTCTTACACAACGGTCCGAAGCCTCAGAA # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.60, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCACTATGGTTCTCACGCAAC # Alternate repeat : GTTTCCATACCACTATGGTTCTTACGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 52089-48861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHL01000014.1 Mesotoga sp. BH458_6_3_2_1 contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 52088 30 100.0 35 .............................. GGGATATTTAATCAAATAAATGGTGGTGATGCTGA 52023 30 100.0 37 .............................. TCCTGTGAAGGGTATGTTCCCGCTGCGATCAAGCCAC 51956 30 100.0 38 .............................. AACATGTATACAGTCTATGCGGGTCTGGTCTAATATGT 51888 30 100.0 37 .............................. TTTTCTTATGAGTTTCTCTCTCTGCTCCGGTGTCTCT 51821 30 100.0 38 .............................. CTGCTCCGGTGTCTCTGCGGCTCTGATGTTCTCGATGG 51753 30 100.0 37 .............................. ATGCAGGCTTAGTCTAGTATGGTCTGATATGGTTTTA 51686 30 100.0 37 .............................. GAGGGATCTGGTGAGATGAATGATATCTCTCCATTAG 51619 30 100.0 36 .............................. GGAATCGTGAGACCTAAGAGCTGCCAGATGCCGGCG 51553 30 100.0 37 .............................. AGCAAAATGGGGCTGCCTTTAGTCAAATACTCCGCGG 51486 30 100.0 37 .............................. TATTGCACCTCCTTTGCCCCTGTTTTTTCGTTTATCT 51419 30 100.0 36 .............................. TCACAAATAGCATAGAAAGTTTCGGTCGCAGAATCA 51353 30 100.0 38 .............................. TTGTTTTGTGCCTCCTTCAACGCCTGATAAAACTTTTT 51285 30 100.0 37 .............................. ATACCTCTGAACAGCACATATTCCCTGCCGCTTACCA 51218 30 100.0 38 .............................. TATCAACCTTTCCCTGAATGTTGTGTGTGAAATCCCCA 51150 30 100.0 38 .............................. CTCTCGTAACGCCTAAGCCTGAATGAACATAGTTTCCG 51082 30 100.0 37 .............................. GCCAAGTGAAGACGGCTGATGGTTTTTCCATGTGATC 51015 30 100.0 36 .............................. GGGATATACGGGCCACAATTGTTTTCGATGTATATG 50949 30 100.0 35 .............................. TGTTTTGCAACGCCAGAACGTTGCCGTCAAGCCTT 50884 30 100.0 39 .............................. GCTACACTAACAGCCATACTAGGAATTGCAACCGTAGCA 50815 30 100.0 37 .............................. GTACACGTACCGACCCACAGCAACGGACCAGACACGC 50748 30 100.0 36 .............................. ATACCCCCGATCACCGACACGCTTGACGCAACATCC 50682 30 100.0 38 .............................. TGCATGTGGTCGAGCCAGTGGTCGATCACTTCTCCTAA 50614 30 100.0 35 .............................. TTCAGAAGAAGATTAGATAGATGGTCGGATGAAAG 50549 30 100.0 37 .............................. AACATGAGTAGGAGTCAACCGAGCGAAGCGAGGGCGA 50482 30 100.0 34 .............................. ATGTATCGGTCGATAATGCTTTTTCTAATAGCTC 50418 30 100.0 36 .............................. AAATTTGGGTAGAAGCTCTGATCTCTTAACCATTGT 50352 30 100.0 36 .............................. TAGAAGTAGACTCCGATGTACTTAATTTCGTAGTCG 50286 30 100.0 36 .............................. TGAGACCGCCTTTTCTGCGTGTTTCAATTATAATAT 50220 30 100.0 37 .............................. ATGAGCGTTAGAATCCTAACCGGTAGTCTTGAGGCTG 50153 30 100.0 36 .............................. TGGATCGTACAGCCTTTACCTGTCGCAGATCCCCCG 50087 30 100.0 35 .............................. TTGTAAATGATTACGTGAGGCTGGTCTCGCTCTTC 50022 30 100.0 38 .............................. GGTTTTGGTTAACGGTGGGTGCGTGATGGTCTCCTTGG 49954 30 100.0 39 .............................. TGGTGTGTTACTTACAAAGCTGACCTCACCGTTTGCTCG 49885 30 100.0 38 .............................. TGTTCTCTTCCTCCCTTTTGTGGCCGACTCTCACTTAG 49817 30 100.0 38 .............................. TGTTCTCTTCCTCCCTTTTGTGGCCGACTCTCACTTAG 49749 30 100.0 35 .............................. GTGTTAAGCTCCAGCAGCAGCTTACAAAGCTCCTG 49684 30 96.7 36 ....T......................... AGGGATCGTACCAGCGGCAAAGAGAAAGGTTCATGA 49618 30 96.7 37 ....T......................... AAGACATACAGCTCATCGTCCTTGAGTCCGATTCTCA 49551 30 96.7 36 ....T......................... CTTGAGGGGAGAGAGACATCTGAGTCCATTGAGCGC 49485 30 96.7 38 ....T......................... TTGCAGAACTCAAGTTTGTCGAAGAACATATAATCATT 49417 30 96.7 37 ....T......................... GCATGATATCACCTTCATGATAAGTTTGTACGCGCGT 49350 30 96.7 35 ....T......................... ATAAAGTTTTGTTGCACGCGCTGTGGATTTTTACA 49285 30 96.7 37 ....T......................... ATGACTTTCTTGTATTCGTCGTCAAGGAATCGATTGG 49218 30 96.7 36 ....T......................... CCAATTCTAGAAGCAAATCCAACTACACCATCAACC 49152 30 96.7 37 ....T......................... TGTCAGCTTTCACGAGAGCGTTCTGAGGCTTCGGACC 49085 30 96.7 36 ....T......................... ACGTTTAGAATATCAGGCCGGTCTCGTCTGATTGGT 49019 30 96.7 37 ....T......................... TTATAGGTAACAGAGTAAACTAATGTATGAAGTACTT 48952 30 96.7 33 ....T......................... GGGAGGACACAATGTATACAACGTTTTCTTCCG 48889 29 90.0 0 .........................-..TT | ========== ====== ====== ====== ============================== ======================================= ================== 49 30 99.0 37 GTTGCGTAAGAACCATAGTGGTATGGAAAC # Left flank : GCTTATTGTCGCACTAGATTACATGCGATCATTTCATGTAAAAGCCATATTGCGGATTATCATCATCGGCTTTTCCGAACAGAGTTGTATTATCCTTCCCATAAGCCTTTCCCGAGTTAATAATTTCGTTACCAATTCTCGTCGGATCGATCGTATGCCATTTTCTTCTAGACTCATTTCCTAATAACACTTCTAGACCTATTTATAATCATTCCTGTACAGTTTACACAGATACGACTGCAGATAGGTCATTTGATTGAAAGCGAAATCGGTAACATTTCCTTCTGTAAGCTTCTGCTGGAGAGTTTTTCGCCGGTATTTTCTGCAATTGGTCTTCCTGAGAAGATACCGACGCCTTCTCCCTCCACATAACACTGCGTCCATCTAGAATCAAATCCAAGCGAATCGCCGAAATGTAAATTCGATGTCGCTTACGGAATCTTCCCTTTTGGTTGATTCTGCCTACCCAAAACCTGTATAATATCTTTGTAATAAAAGCG # Right flank : GCTGCCTTCGGCAGGACGCTGTGCCGGGAAGATCATCCCGGGAAGTGATGCGCCGAAGATCATCGGCGGACGCAATGCCCGGAAAAGCATCCGGGGACGTATGGCTGGCTTCGCCAGGAGGGAAAACCCTTCTAGGAGCAAGACATTAAGTTTTAAGAACCAACTCAGTTTGTCATCCTGAAAAGCTCCTGTTCAGGATCTGGTCTTTGATCTTAACGAAGGACGGGTCCATGCTCTTGGACGGTCAACGGAGGACGGCTCTTGTATGAACCATAGTGGTATGGAAACTGCTGGATCATCGTATGGATTTCTGCTAACTTGAAGACTAGTTGTGTAAGAACCATAGTGGTATGCTAAGAGCCGTTGTGGGTGGTTCGTGGTTGGTGGTTGGTCAGGAGCAAAAAACTAGAGCCTGACCTATCCTCAAGAAGCAAATTATAGCAATATGATCAGAACCAACTCAGTTTGTCATCCTGAAAAGCTCCTGTTCAGGATCTGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTAAGAACCATAGTGGTATGGAAAC # Alternate repeat : GTTGTGTAAGAACCATAGTGGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //