Array 1 27425-28466 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEI01000003.1 Persephonella hydrogeniphila strain DSM 15103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 27425 30 100.0 39 .............................. AGATGTAAACCGGTTCTTTCAGCATTTTCATAAAAGCAA 27494 30 100.0 35 .............................. TAACGCACCGCCTTCTCAATCTTGCTCACGGCAAA 27559 30 100.0 36 .............................. ACATCTAACTCCCACTTTCTGCAATAGAAACTTGCT 27625 30 100.0 38 .............................. TTCTTCTCATCATTTAAATTTTCATCTAAATGATCCGC 27693 30 100.0 36 .............................. TAAAAATCTTTGAAATTCATAAATCCCTTTTTGACA 27759 30 100.0 39 .............................. GCTAACATACAAGTAGTATGGGATACAACTATTACAAAA 27828 30 100.0 40 .............................. ATGATTTTGGAACAATGCCATTTGGCTATTTGAAGATTGA 27898 30 100.0 39 .............................. GATCCAACATCAAAATCCCCACTTCCTAGAGAAAATTGT 27967 30 100.0 35 .............................. TATCAATCCCTATTTCTTTGATTTCTTCTGGCGAA 28032 30 100.0 39 .............................. TGACGGATATTTGTATATACTTTTCCATATAGTTTGAGG 28101 30 100.0 40 .............................. AAAAATTCAAAAACTCCACAGGAGTTCATTTCAAAATATC 28171 30 100.0 36 .............................. TCTCCATGTTCACTCCTCCTGTTCCCTGTTGTCGCG 28237 30 100.0 36 .............................. TCACTATAACAATAGGGTTTATCGTTTTAAAGCTGG 28303 30 100.0 37 .............................. TTCTTTCTCTTTTCCTCATTTTACCTGCGGCATTTGC 28370 30 100.0 37 .............................. TACTGCTAAAAAATCCCATTTCATTTCCTCCATCTTA 28437 30 93.3 0 ...........G.................T | ========== ====== ====== ====== ============================== ======================================== ================== 16 30 99.6 38 GTTTTTAGAGTACCTATAAGGAATTGAAAC # Left flank : GGTGAAATAACAGATGCTGCTTTAAGACTTTTAAAAGATGAACTAAAGGAAATAATGGATGATAAAGAGGATAGTATTTTGATATACAAATTCAGAACAAAGAAATATTATGAAAGGGAAAGTATTGGCGTTAAGAAACCTTCCCACGAAGACATGTTCTTTTAGTATTATTTGAGATTTTTAGCATCAGTTTGATTACTCAAATGAGACAAAATTTTGCACAATTTTTATTCATCATTAGAGAAGAAATAGACATATCAAATATTTGTCGATCTCAAAAAATGAGGCTTTTTCTGGACTCATTCTCATTGAGATTTTGTCTGATTTTTTTTATCTAAGCTTAGAGCTTCAATGGTTTGTCGATCCCCGGGAGTTTTTGCAGGATTGGAGGTCGACCGAAAATTAACTCAATTTGACAGCTTTCTGTTTTTTCTTTATATTTAAAATCAGCAAGATATATCAATGGTTTCTTGGAAACAGAATAAGAAAACAGTTAAGGG # Right flank : TTAACAACATCTGAACTTAAAAAAATATCTAAAAATTTGTGCAAAGTTTTTACTTATTTGTTATGCTTTTATTAAGATTTTCTAATGTATGCATATAGGAGAAATAAAATGAAAAAAGCAGTTTTTCTACTACTTTTTTTATTTTCATTTTCTTTAGCGACACCACAAGACGAACTTTGCAGAAACCTTAATGATCTAAAAAAAGTAAAAGAAATTCTAAAAAAAGTATCAGCAGGCAAAAGAGCAAATCCAAATGCTCCTTGTAAAGAAGGAGATAGCCCAATACATATTGCCGCAAAAGAGGGGAAATTAGATATTTTAAAACTTTTAATAAAGCATGGTGGTAATGTTAATTTAAGAAATGAATATAAAAATACACCTTTGCATTTAGCAGTTTTTTATAATCATGAGAATGTCGTAAAGTATCTTTTAACAATAAGAGCAAACCCAAATTTAAGAGAAATTCACAGTCTTACGCCGTTACATATAGCAGCTTACAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 40132-39825 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEI01000011.1 Persephonella hydrogeniphila strain DSM 15103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 40131 30 100.0 43 .............................. GAGAGCATCAAGCCCCCAGCTATACACATTGGTGAGTTTCTGA 40058 30 100.0 36 .............................. AATCTCCTGAACTTCTACGGAGTCAGCCGTAAGCCT 39992 30 100.0 40 .............................. GCTTTTTCTAATAAAGTGTCTATCATTTTAGAGGCCCTCT 39922 30 100.0 38 .............................. TAATGCCGTCTAAAGCTCCTTGAAATATATAAGCTTTA 39854 30 86.7 0 .........................AGTT. | ========== ====== ====== ====== ============================== =========================================== ================== 5 30 97.3 40 GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Left flank : GGTAAACTTTTGTAAAACATACCCTGAAGAGTAGTATTATGATGAAGCGGTAGAGATATATATTCTTTGTCTGTGTGGAATGTAAGTTTTAGTCTCATATCATCCCCCTTCCTATCCTTATTTTAAGAAAAGTTTATTTTTATTGCAATATATTTTTTGTTATTTTGTTTATTTGAGATTTTTAGCATCAGTTTGATTGCTCAAATGAGACAAGATTTTGCACAATTTTTATTCATCATTAGAGAAGAAATAGATATATCAAATATTTGTCGATCTCAAAAAATGAGGCTTTTTCTGGACTCATTCTCATTGAGATTTTGCCTGATTTTTCTATCCAAGCTTAGAGCTTCAATGGTTTGTCGATCCCCGGGAGTTTTTGCAGGATTGGAGGTCGACCGAAAATTAACTCAATTTGACAGCTTTCCGTTTTTTCTTTATATTTAAAATCAATAAGATATATCAATGGTTTCTTGGAAACAGAATAAGAAAGCAGTTGAAGG # Right flank : TGGATTGATTTACATTAATAAGGCTTTCAGTATTGGATTTGTTGCTATAAGTTCTGATAAAAATGCATTGATGATATACAGAAGAATATGGAAAATTGCGATAAAGAAATAGTATTTTTTTATAGTTACAAACCCGCTACCTGTCCATAAAACATAAAAACTGTAAATAAGACCCACATTGCTTAATATTCTAAGCGGCTGATATATATCTACAACATCTGAGATCCATATAGGAATATTAACTACAGTATAAAATTTTAGTATCTGGTTTAGATCTTTTTTTAGAATTTTTGAGATAGTGTATGAAAAGATAATAATCATAAGGATATCCATAAAATATGTAGTTGTAGAATATAAAAGTGCCTTTTGCATGGAATAGTTAGACTGGGATGTTAAACTGAAAAAGGATAAAATGGGTCCTATTAGAGCAAAAGATAAGCCGTATTTTGCCAGATAATGCCATCCTGTTTTTCCGTCTTTAAATATATATTTCCAGTAGT # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 147828-147529 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEI01000002.1 Persephonella hydrogeniphila strain DSM 15103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 147827 30 100.0 36 .............................. ATGTATCTACGACAATAAGCCTTTGTCCTTCTGCTA 147761 30 100.0 40 .............................. GAAATCCGAACAATCTAACAGCTACATAAAACAAATAAGC 147691 30 100.0 38 .............................. TAGATGAGGCTCAAAGATATTTTGATAGGAAATTTTTT 147623 30 100.0 35 .............................. TGGACTTCTCAACTGTAACTGTTGACCTTGCTCCT 147558 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 5 30 100.0 38 GTTTTTAGAGTGCCTATGAGGAATTGAAAC # Left flank : GTCTTGTAAGATATATAACAGAACCGAAAGATGAACTTCAGCCTATGAATCCAAATTTTGCACTTCTTCCTGATTTAGACAATAAAATAAAAGATAAAAGGAAAAGAAAACTCCTGAAAGCCCAGAGAGCATTAAAAGATATGGAAAATTTTGCTTCTGAATGGAAAAATAAATGAGATTTTTAGCATTAGTTTAATTGCTCAAATGAGACAAAATTTTGCACAACTTTTATTCACTCTTAGAAAATAAATAGATATATCAAATATTTGTCGATCTCAAAAAATGAGGCTTTTTCTGGACTCATTCTCATTGAGATTTTGCCTGTTTTTTCTATCCAAGCTTAGAGCTTCAACAGTTTGCCGATCCCCGGGAGTTTTTGCAGGATTAGAGGTCGACTGAAAATTAACTTAATTTGACAGCTTTCCGTTTTTTCTTTATATTTAAAATCAACAAGATATATCAATGGTTTCTTGGGAACAGAATAAGAAAGCAGTTGAAGG # Right flank : ACGAAACCCTGCATTAGCCTAATATCTATAGCCTTGTTCCTTATGCTCTTAGAAAGATTCTTCTTTTGAAGAAAGATCAAGTTTTTCAAGATTTTAAATATCTTCTACAACTTTTTACACTCTTTCACGATCTTTTTGTTTTAAGACTGCCTTAAGCTCTCTTTTTGGAATAAATGTTATAATTTATTATCTTCAAATAATACATATTGGGGGTGTTATCTATGCCTAATATTGCAAAGACAGAAGAACAGCTAAAAAATATAGCCCATCAAGCCGTTGAGTGCGATGGAGAAAATATATCAATCAAAGACGAAAAAAAACTGAGAGATACAGTTATTGATGATCTTATCTATACAGCTGTATTCTCTGAAGACGAAAACCTAAAAGAAAAAGCAAAAAAACTTATAAGAAAGATTGCTAATGAGTTCGGGGCTATCCCAGCATCTATACACGATTTCTATATGGCAATGGGAAGAGGTGAAGTTGATAAGATAACGACT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 80823-82606 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEI01000006.1 Persephonella hydrogeniphila strain DSM 15103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================================================== ================== 80823 34 100.0 68 .................................. CCCGAGTAAGCCCTGTTTTTTTAGCAAATTCAGTTATAGAGATATTATGCCTGTCAAGATAAGCTTTA 80925 34 100.0 39 .................................. CCCGAGTAAGCCCTGTTTTTTTAGCAAATTCAGTTATAG 80998 34 100.0 41 .................................. CTTTCTTCCAAACTCATCTCCTTTTTGTCTTTTTGGTAATA 81073 34 100.0 43 .................................. CAAAATTTTTTTCTCTATTTCATTGAAGAATTTAATATTATTT 81150 34 100.0 48 .................................. CTGGAGAAAAACTCTCTCCAAATATGCTTCTCTTCAATATAGTCTTTT 81232 34 100.0 44 .................................. CATACAAGACATTGATAGCTCAAAGTTATCAATGTTTAGCGATT 81310 34 100.0 41 .................................. CTGAGGAGACTCCAAAATTATCGTAAAGGGTGCTCCACCCG 81385 34 100.0 41 .................................. CGAGCCCAGTAGTTCCAGATTTAAGTTTTTCAGAGTCTCCT 81460 34 100.0 41 .................................. CGAGCCCAGTAGTTCCAGATTTAAGTTTTTCAGAGTCTCCT 81535 34 100.0 41 .................................. CGAGCCCAGTAGTTCCAGATTTAAGTTTTTCAGAGTCTCCT 81610 34 100.0 39 .................................. CTCTTCAATACTTCTACATCTTCAGAAATTCCTAACTCT 81683 34 100.0 46 .................................. CTTATCTAATTCAGGCAATTTAGATAAATCTTCTACACCACATTTA 81763 34 100.0 41 .................................. CTGCAAGGTAGGCGAGAATTTCCTCGAGCGCTTCCAAGCGC 81838 34 100.0 43 .................................. CACTTCAAGGTACCCCTTCCTTTCTATCAACATTCCTACGAGA 81915 34 100.0 36 .................................. CTATCTTTGGTACGCCGTAATTGTCGGTCAATAAAC 81985 34 100.0 40 .................................. CACCTTTTTTGGTCTGGTACAAGCAGTACCTCTCTCCCAT 82059 34 100.0 47 .................................. TACTCTAAAAAGGAAGGGCTACCCGAGTAGCCCCTTGATATAATTTC 82140 34 100.0 36 .................................. TTGATATACGGGGTTAATAGCATTACGATAATTGCA 82210 34 100.0 39 .................................. TTCTTTTAAAGGCTTTTTTGTGGAGGAACTCTCTAATTT 82283 34 100.0 37 .................................. TTATTTATTAGTTTCTAGTATTTTTGCTATTTCATCT 82354 34 100.0 38 .................................. TATAATCTTCGGGCAATACAACACCCCAGTCGGGGTAT 82426 34 100.0 38 .................................. TTTCAAGGAACCTTGTTTCTTTCATTATTTTTTTGTCT 82498 34 100.0 41 .................................. CTGCAAGGTAGGCGAGAATTTCCTCGAGCGCTTCCAAGCGC 82573 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ==================================================================== ================== 24 34 100.0 42 CTTGCAATTGACCCGTCTAATGAGGGTATTGCGA # Left flank : TCTACTGCAATTAATTGATTCTGTTAGAGAGTTAAGGAACAAAACAAATCATGGTTTTATTGGTAGAAATTCTAAAGAAGAAGAAATAAAAAAAGCTGTAGAGAAATTAGAAGATTACCTAAATAAAGCTCAAATCATATTAAAAATGAATAAAACCCAAATAAAAAAGATGAAAAATTTTATAGAATAATGCTCCTTAAAAAATCCTCAGTATAAGTTACTTTAGAAAAATATCTTTACATAAATGAGATTCAAATGAGTCTCAATTATGAAAATCGGTGGAAGTCCGCATTCTTTTAAAAATCTGTACAGATTTTTGGGCATTTTTAAAAGTGTAAAACTTATAAGTTGTTGAAAAATAAAGAACTTATAATTGAGACTGTACTGAGACTTTAGAATTGACAATTTTCTGATTTTATCGTATCTTAATAAGAAGTCTGTACAAAAAACGGCTATTTGGAAAATGAATATGTTGATATTCAAGGCTTCCAAAGGGGTCT # Right flank : ACGATATAAGAAGTTGTGTAATCTGTGAAATGTTATAATTCTTGATATGAATTGGTTTAAAGGTCTAAATGAACTTGGAAAAGGGCTTATAAACTTAGCAGTTACAATAATTGTGTTTGCTGTCGTTCAGCCTCTGGTTAAGGGTAGTTTTTCTTGGGATACTTCTGTTGCATCTTTCTTTATTTTGGTTATACCTATTTCCATAGGTGTATTTTTTGCATCTTTAAAGGGAGATAAAAATGAGCAATGGGGCTTTAAATATCTTATTCTTAGGTGGAGGAATTGCTCATTTTTCTATTGCTCTACTTAGCTATTTTGAGCTTCCAAAAAAAAAGAGCGTAAATCATCTTAATCTTCAAAAATTCCCTACAGATATTAAACAATATTAAAAATATTTCCTTTCTGTGCTTTTCCGAGTCTAATAACAGCCTTAACATCACCGACAGGATACACAAAGAATTTATCTACGATATCAATCATCTGCTCTACATCCTGTAAAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAATTGACCCGTCTAATGAGGGTATTGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 47061-45937 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEI01000001.1 Persephonella hydrogeniphila strain DSM 15103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 47060 30 100.0 40 .............................. ACATTTACATTTAAATTATCTATAATATTATCAATATATC 46990 30 100.0 40 .............................. ACATTTACATTTAAATTATCTATAATATTATCAATATATC 46920 30 100.0 40 .............................. ACATTTACATTTAAATTATCTATAATATTATCAATATATC 46850 30 100.0 38 .............................. AAGAAATAGGAATGTCTATTAGTATTTATGTAGGTGAA 46782 30 100.0 37 .............................. TGGCTTGAAGAAAAGAAGCAGCCAACAAGATGGGATA 46715 30 100.0 37 .............................. CAAAAAGACAGGCAAGCAACCTTATTGCCGTTTTGAA 46648 30 100.0 40 .............................. GACATAACAAGGTCAACATTTTTAACAATAGGTGGAGATA 46578 30 100.0 35 .............................. AAAATCATTAAAACAGAAATGTCGGATGCTATTAG 46513 30 100.0 39 .............................. TAGTTTCATTTGCTATATCTTTTCTGAGTGCTGCAATAT 46444 30 100.0 37 .............................. CTCCATCTGCAAGACAAATATACCACCTTCCATCACT 46377 30 100.0 40 .............................. ACTAACAAGTCTTTTGCCGCCGGAGATGATGTTTTTGTAA 46307 30 100.0 38 .............................. AATGATGTCAGGGTTCACGATTTAAGGCATACATTTGC 46239 30 100.0 39 .............................. GTATGCCCTCACTATTTGCATTTCTTTTGCTGTATCAGA 46170 30 96.7 38 .............................T AGGTTATACCTCCTCAGATCCTCATTCGCTGTAATTAT 46102 30 100.0 36 .............................. GGGTGTGACATGAGAAGAGCTAAAACTGGATATAAA 46036 30 100.0 40 .............................. AACAGTAATCAAATACAATTTTTTTGTCAGGGTATTTTTT 45966 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ======================================== ================== 17 30 99.6 38 GTTTTTAGAGTGCCTATGAGGAATTGAAAC # Left flank : TTAGGAGAGCCTATCACTCATATATATATAGATGAAGAAAATCCTCCTGAACCAGAGATTATTGACAGATTAATCAATAGCTTTAAGGTAAGCTCTATCTCTTCTGATAGAATATCTATATTCTTGGATAAGAAAAATATAGATCTGTTGACAGCTATATTCCTATCTCAAATTGAGAATTTAACCATAAAAAATTCTTCCTAAATGAGACAAGATTTTGCACAATTTTTATTCATCATTAGAAAATAAATAGACATATCAAATATTTGTCGATCTCAAAAAATGAGGTCTTTTCTAGACTCATTCTCATTGAGATTTTGCCTGATTTTTCTATCCAAGCTTAGAGCTTCAATGGTTTGTCGATCCCCGGGAGTTTTTGCAGGATTGGAGGTCGACTGAAAATTAATTTAATTTGACAGCTTTCTGTTTTTTCTTTATATTTAAAATCAATAAGATATATCAATGGTTTCTTGGAAACAGAATAAGAAAGCAGTTGAAGG # Right flank : GAAACCTTTATTTAGTTAATTGATTATTTATACTGGCATTCAAAATATAAACCTTTGAGCAGAACTCAAGGTCTGATGTGAGCTTGAGGGCATAGTTCAGGTTGTTATGTACTACAAAGGAGCCGTGTTTTTTTACAATGACTACGTTTTTTTCATTTTCTTTAAAAAAATTCGATAATGCTTCAGCAAGTTCTGGTGATCCACTTGGATGTTCAACAGCAATAACAGGAACTTCTCCAAGAAAAAGCTTTCCTTCGTTGTCTATAGGAATAAATTTTTCACCAATAGAAAAACTTAAAGCAACAGCACTTACCGGGTGTGCATGTATTATCGCGGTATAATCTGTTTTCTGATATATTGCCCTGTGGACTATCAGTTCTGATGAGGCTATTTTATCCTTTTCAGATTCTTTCCATACAGGAACATCTATTATATCTTTCTCCTGTAAATACCCCAGCATTGCTCCTGTTTTTGTAATATAGATAGTATCGTTATCCCTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 104485-104990 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEI01000001.1 Persephonella hydrogeniphila strain DSM 15103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 104485 30 100.0 36 .............................. TTTGTTCTGCTGTGTTTAGATCCTGGGTTTTCTCCA 104551 30 100.0 38 .............................. GAGACCTCTAAAAATTGAGATAAATCTTGTATACTCCA 104619 30 100.0 40 .............................. TATATTTATAAAGTAAATGATTTAGAAACATTTAAAAAAT 104689 30 100.0 40 .............................. TAAAAAACCTGTTGTTGATAAAAATCTTTTGTTCAAGTTT 104759 30 100.0 38 .............................. CGAAAAAGCGATAGAGCTATTTGGTGGCACTTTTGCAG 104827 30 100.0 36 .............................. TCCATTTGTCCTTGTTTTTCAGTTCGCTGTCTAAAT 104893 30 100.0 38 .............................. GATAGCTTTTCTAATGCTTCCTCTAAATATTCTCCTGC 104961 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================== ================== 8 30 99.6 38 GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Left flank : GATCAAAAGAACAGCAAGAAATACAAACATAGAAATGAAAAATGAAATAATCAAAACAGTGGCTAACACGAAATAAAACCATATTTTTGTTAGAACACCCATCTTTTACCTCTCTAAATATATATCTTTAAATATAGTCAAGACTTAGTAAATTCACAATGATTTAGTTAATTGAGATTCTTTATATTGATTTTGTCTCTTAAATGAGACAAGATTTTGCACAATTTTTATTCACTCTTAGAAAATAAATAGACATATCAAATATTTGTCGATCTCAAAAAATAAGGCTTTTTCTAGATTCATTCTCATTGAGATTTTCTCTGTTTTTTCCATCCAAGCTTAGATTTTCAATGGTTTGTCGATCCCCGGGAGTTTTTGCAGGATTGGAGGTCGACTGAAAATTAACTCAATTTGACAGCTTTCTGTTTTTTCTTTATATTTAAAATCAATAAGATATATCAATGGTTTCTTGGAAACGGAATAAGAAAGCAGTTGAAGGG # Right flank : TAGAAAGGGATTAAAAGAGTGTTATTGCAGATCCTCTAAAAATTTCTTTATTCTTTCTATTCCCTCTTTCATATGTTGAATATCCCGTGTGTATGCAAATCTTATATATTTTTCTGTATTATTTTTGCCGAAATCTATTCCCGGAGTAACAGCAACACCTGCTTTTTCTAAAAGATCCTGTGCAAACTTAAAGGAGTTACCACAGTATTTTTCTACATTTGCCCATATATAAAATGCTCCCTGCGGTTTGGCATCAATATCAAATATTTTTTTTAGCTGGTCAAAAAGAAAATCTCTTCTTTCTTTAAATATCAATCTGTTTTTTTCAAGATGCTCATAATCAAAAGCTCCGAGAGCAGCATACTGGCTTACAGTGGGTGGCGATATAAAAACATTTTGCATAACTATTTCTGCTTTTCTCATTAGTTCTTCAGGAAGTATAATCCAACCAAGTCTGAAACCGGGCATACAGAAATATTTTGAAAATCCGTTTATGACTA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 214424-215126 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEI01000001.1 Persephonella hydrogeniphila strain DSM 15103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 214424 35 100.0 38 ................................... AGTATTTTTGATTATCTTTAGTATTTCATTATATTCAT 214497 35 100.0 38 ................................... AGTATTTTTGATTATCTTTAGTATTTCATTATATTCAT 214570 35 100.0 38 ................................... AGTATTTTTGATTATCTTTAGTATTTCATTATATTCAT 214643 35 100.0 40 ................................... CATCAATTGTATTTCCTCCTCATATTTGAGGAGTGAATTT 214718 35 100.0 38 ................................... GAAAATACAGGAATTACTGATGATTTAAATGCAGAAGT 214791 35 100.0 40 ................................... CGTAAATGTTAGTTTTGTTATATTTTAATAAAAATTTCCA 214866 35 100.0 40 ................................... CGTAAATGTTAGTTTTGTTATATTTTAATAAAAATTTCCA 214941 35 100.0 40 ................................... CGTAAATGTTAGTTTTGTTATATTTTAATAAAAATTTCCA 215016 35 100.0 41 ................................... TTTTACAGGATTTTTGTTTTTATAATACTACTACTATTATT 215092 35 97.1 0 ..................................A | ========== ====== ====== ====== =================================== ========================================= ================== 10 35 99.7 39 CTTGCAATTGACCCGTCTAATGAGGGTATTGCGAC # Left flank : ATAGTTTAATAAAGAAAATAGTTAATGAAAATTTAAGTAAAAAAGAAGTAGAAAGATTGGTAAAAGAAATGTTAGGAGAGGAAGCAGAGAAAAGGGTAAAAAACCCATTTAAAGAAGCATTTAAAGATATAAACAGGAAAGTATCCTCAGTATACAGAAAATTACCTGAACCAGAAAAGAAAAAAATAGAAAGAGAGATAGAGAAGAAGTTAAGTGAGATTTACAGGCTTTTAGAAAAGTATGACTGATATTGTAATGAGTCTCAACTATGGAAATCGACGGAAATCCGCATTTTTTTGAAAATCTGTACAGATTTTCGGGCATTTTTTTGAGTGTGAAATTTGTAAGTCATTGAAAAATAAAGAACTCACAGTTGAGACTGTACTGAGACTTTAGAATTGACAATTTTTCGATTTTATCGTATTTTAATAAGAAGTCTGTACAAAAAACGGCTATTTGGAAAATGAATATGTTGATATTCAAGGCTTCCAAAGGGGTCT # Right flank : TTACAAAAATCCGGAGGTGTTTGTGGAGTTTAATGTTCATCATATTGCCATATCTGTCTCTGATATAAATAAAGCTGTTGAGTTCTACAGCTATTTTGGATTTAGGGAAGTTGTAGATTTTACCGCTGGTGATAATTCTTTTAGAATAAAACATCTGAAATCTGGAGATTTCATAATTGAGCTCTTCTGGTTTAGAGATAGGGTAAAAACAGAAAAAAAGGAGTTATGGGAAGATCTGAAAATAAATGGATACAGACATATAGCCTTCAAGGTGAATGATATCCATAAAGCCCTTGAAAAACTCAAACAAGACGGTATAGCCGAAGAAGATACAGAGGTAAGCACAGGAAAAACAGGTATTTTATATTTCTTTGTAAAAGATCCTGACGGAAATTTTGTAGAGATTGTACAGGATAATAGAAATCTATAGTTTTGCTGTTTTTTCTTTTAGTATAAAGTTTTCTACAACATCAAGTATATTTTCCCCAACGAAATCTGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAATTGACCCGTCTAATGAGGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 254590-254999 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEI01000001.1 Persephonella hydrogeniphila strain DSM 15103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 254590 35 100.0 40 ................................... AAATGTGATAAGAAATTGTATGTATCTATATCTTCTATGT 254665 35 100.0 41 ................................... TTTGCTCACAAACCTTCCATTTTCCAATTCTCTTGTTTCCA 254741 35 100.0 36 ................................... TTGATCTTGGGGATTTTTACCTCTATCCCCTCTTCT 254812 35 100.0 40 ................................... ATTGATAATTTAGAATCGTCAATATCCTGTATATAAATAT 254887 35 100.0 43 ................................... TCGCAAGAATTTTCAGGATCTCCATAAATAAGATTTCCTTCTG 254965 35 80.0 0 ......G.....T...C....A...A....AT... | ========== ====== ====== ====== =================================== =========================================== ================== 6 35 96.7 40 CTTGCAATTGACCCGTTTAATGAGGGTATTGCGAC # Left flank : CTACTGCCCATTTATATAGGGGTGTCCCCAAAAAAACCTGATTAAGTATTTCATTTAATCTGTTAATTAGTTGCCCATCCATACTAATAATTATGTAGATATTTTTCCGTTAAGTAAATACTGAACTTCACTTAACAGATTAAAGTTAGTTATGTTTCAAGATTAATTTTTAATATATCTTGTAAAGATATATCCAAAATTTTACTTGAAATTCAAGGTTTATCGGCAGAATACTTCTCATTAATTGATACTATAACGAGTCTCAATTATAAAAAATCGGTGAAAATCCGCATTTTTTGAAAATCTGTACAGATTTTCGGGCATTTTTTCGAGCCTGAAATCCGTAAGTCGTTGAAAAATAAAGAATTCGTAATTGAGACTGTACTGAGACTTTAGAATTGACAATTTTTCGATTTTATCGTATTTTAATAAGAAGTCTGTACAAAAAACTGCTGTTTGGAAAATGAATACGTTGATATTCAAGGTTTTTAAGGGGGTAA # Right flank : CAGGAATCACTTAATGAAAGTCCAGTGATAAGCTGAAAACCATCTTGAGATCAAAAATGTTGAATTGCTCTTGTTACTTTTCTTTTTTCCTTTCTTCTATCTCTTTCAGGGCTTTTTCAAAATCTTTAATATCCTGAAACTCATTGTAAACAGACCTAAATCTCAGGTAAGCTACTGGATCTATCTGCTTTAATTTTTCCTGGACAAGATCTCCTATTTCTGTACTGTCAACGACAAGTTTTCCTTCTTCCAATAAATACTTTTCTATTTCATCTGCTATTTCAATCATCTGTTTTTCAGATACAGGTCTGTTCTTTGAGGCAAGTCTTATTCCTCTAATGATTTTGTCCTTATTGAAAGATTCTGTAGTACCGTTCTTTTTCTTTACTATAATTTTTTCTTCTTCATATCTTTCATACGTAGTAAACCGAAATCCACAGTCAAGACACTCCCTTCTCCTCCTGATAACAGTTCCGTCCTTAGATTGTCTCGTATCTACA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAATTGACCCGTTTAATGAGGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 275555-274317 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEI01000001.1 Persephonella hydrogeniphila strain DSM 15103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 275554 30 100.0 37 .............................. AAATGTATTTTTCGAGTAGTTCCTTCATATTTTCATT 275487 30 100.0 36 .............................. GGTAATTTCTTATTTCGTGGTTTATAAATGATTATA 275421 30 100.0 36 .............................. ATAATATTCTCTAACCTAAGACTTACCTTATCTCTT 275355 30 100.0 36 .............................. ATAATATTCTCTAACCTAAGACTTACCTTATCTCTT 275289 30 100.0 36 .............................. ATAATATTCTCTAACCTAAGACTTACCTTATCTCTT 275223 30 100.0 36 .............................. ATAATATTCTCTAACCTAAGACTTACCTTATCTCTT 275157 30 100.0 39 .............................. TAAATTATATCGTATCTTTTGAAATAAATAGCATCATCA 275088 30 100.0 38 .............................. AAAAGAAACCACATCCTTAAAGCCCAGCTTAAAAACAT 275020 30 100.0 38 .............................. TTAGAAAATGAAAAAAAATTACAAAATTTGATAGATGA 274952 30 100.0 36 .............................. TTGTAATAAAAAAATATGAATCTCAGAAGATGATTA 274886 30 100.0 38 .............................. ATAACACGCAAACCCAGAGGGCCATGAGATGTATAACA 274818 30 100.0 37 .............................. CATTCTGCAACTAACTAACTCTCGCGGCTCATTGCCA 274751 30 100.0 40 .............................. CACATTAGGAAAAAAATTGAAAGGCTCAAATCAATAAAGA 274681 30 100.0 37 .............................. CGTTGAAATTGAAGAAGGCCTTTACCCCCAAAAGGTA 274614 30 100.0 36 .............................. CATCGTAATTTTCGTAATCTTCATTTTTATACATAT 274548 30 100.0 39 .............................. TCAGAAAGTTTTAGTTGCTCAGGACTTGCTTTTAGTTGA 274479 30 100.0 36 .............................. ATTTTATGCTTTCCTCAATTCTAAACCTTCCGTTTT 274413 30 100.0 37 .............................. GAGTCCCCAAAAATTCATTTTTCTATTTCTTCTATAT 274346 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 100.0 37 GTTTTTAGAGTACCTATAAGGAATTGAAAC # Left flank : AGCAACAGAAAAAGATATAGAATACCTTAAGCATCTATCAGAGAACATCCCTGCAAATTCAATATGTGGGCTTGGCATGTCGGCGCCTAATGCTGTAGCAGATGCTCTCAAAAAGTTCCCTGAAGAAATAAAAGCCCACTTAAATAAAACATGTAAGGTATGCTTTGGTTAATTGAGATTTTGGATGTAAGTTTAATTGTTTAAATGAGACAAAATTTTGCACAATTTTTATTCACTATTAGAAAATAAATAGATATATCAAATATTTGTCGATCTTAAAAAATGGGGCTTTTTCTGGACTCATTCTCATTGAGATTTTGTCTGTTTTTTCCATCCAAGCTTAGAGCTTCAATAGTTTGTCGATCCCCGGGAGTTTTTGCAGGATTGGAGGTCGACTGAAAATTAACTCAATTTGACAGCTTTTTGTTTTTTCTTTATATTTAAAATCAATAAGATATATCAATGGTTTCTTGGAAACAGAATAAGAAAGCAGTTGAAGG # Right flank : TATTACAAATGTAGATTACAGAGATCCATCCAAAGGACAAAATCCCAAGAGAAAAAGCTCACCTAAACTGTATGTATTACTTAGAACCTATTTATGATTTGGAGACAAAAGGGAAGAAAAGAATAAGATCAACAATAGACAGGAAAGTTTTAGAAATATTTGCCCCTAAGTATATTAAACAGCTGGTTAATAAAGGATTTGATATTAAAGAACTTTTAACAAAAAAGAGAGACATTTATACCTAAAAGGGAGCTTGATGCAGTTTTGAAGCAAAAAAGATTTGAAAAGATTCAAAGAACCATAGAAGAAAAATTTATCAAAAATTTGGAACTACTTGACATATCATCAAAAGAAAGGTTTTTGGAAACTTTCCCTAATTTATGGAAAAGGAAAAGAAGGTTTAAAGAACATGTCAATGAGAGAGTTCAAAAAAAACATATCCCAAAAGAAAATGCAGACCTTTTTTACGCAAAAAAAATAATAGAAGTATTAGTCTTTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //