Array 1 19386-17903 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDYM01000016.1 Staphylococcus agnetis strain 722_260714_1_8_heart PRI-XJJ4-H1_S5_L001_R1_001_trimmed_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 19385 36 100.0 30 .................................... TCGATATGTTTTGGACACTAACATTTGATC 19319 36 100.0 30 .................................... TCACACCTCTACTTAAATTGTTCGGCCACC 19253 36 100.0 30 .................................... CTGAATCCGATGGATAAAAAAGCCTATAAC 19187 36 100.0 30 .................................... ATATATTTTTCTTCTGATTCAATTAGGCTC 19121 36 100.0 29 .................................... CGTAACTAGAAATGGTAAGCGTGAATGTT 19056 36 100.0 30 .................................... ATTCGCAATATCAATTGAAAAACCAATCAC 18990 36 100.0 29 .................................... GTAATTTAGAACCAACTTTAGTCGACTCA 18925 36 100.0 30 .................................... GCACGATATCAACTAATATATCGACGAAAC 18859 36 100.0 29 .................................... TTTGTCTCTTTTGATATTTAGTTAATGAC 18794 36 100.0 30 .................................... AAGTGAGATTACTTTCTGAACACAACAATA 18728 36 100.0 30 .................................... TCACACCTCTACTTAAATTGTTCGGCCACC 18662 36 100.0 30 .................................... GTATGACATGGCTACAAAAGACGGTACAAT 18596 36 100.0 30 .................................... ATGGAACAGTTAATGAAGATAGCATTAAAC 18530 36 100.0 29 .................................... TAAAATTTTGCGATTCGTTCTTTCAGCTT 18465 36 100.0 30 .................................... AAAGGACTAGAGAAATCTTTTGTTCCGTCT 18399 36 100.0 30 .................................... ATCATTTTCAGGTTCTTCATCATCAATATT 18333 36 100.0 31 .................................... CTGGAGACGCACGCTATACTCAATGGATGGA 18266 36 100.0 30 .................................... ATGCGTTGATTACGGGTATTACGGGTGGTG 18200 36 100.0 30 .................................... CTTATGGGAGTTCACAGATTGCAGATGATA 18134 36 100.0 29 .................................... TTTCTAAAAGAAACAACTTTATAACTCCA 18069 36 100.0 30 .................................... GATGATTGACTGGCAACTTATTGAAGTTGG 18003 36 100.0 29 .................................... CCAAAAGAATCGGCGTTGTGGCGCAGAAA 17938 36 77.8 0 T........................G.TTT.AT..A | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTGGTCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTTACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGCCCAAAATCTTTAAAAAGATCACTCGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGGTCACATCTAATCCTTTACAATCTTATTATATGACAAAGGGCAAAAATAGTCAGGGTCAAAGTATTGTGGTGGATGTAAATTAAAATTTATCCAAAATACGTAAAGATCAGTGATATCAATGGATTAGACAAACTTAAAAGTTATAGTATACTGTAGCTAGAG # Right flank : TGTGCTATTTATGAAATATCTATATAAGCGATCCATTTATTTTAGCGATAACCTCATAAAATTGTTTAACTCAATGAAATAAATGTTATTTAGGTGGAAGTTATAACACTCACTCTATAAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTGTTCTTCTTTTATAATAGTATTCAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTACCTCAGTGGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGATAATAATGAAGGAAGACGTAGTAAAAGGGGAGCGCGACGTTTAAAAAGAAGACGAATTCATAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //