Array 1 14995-15778 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCTL01000054.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_lowcov_bin_ru-nijmegen, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 14995 37 100.0 38 ..................................... TTATCATCAAGACATTCTGGCGCTTCATATGAATCTGG 15070 37 100.0 37 ..................................... GAAAACGGATTGGAGAACCCACTGTCATCAATTTCAG 15144 37 100.0 37 ..................................... GCTCATCGCCGTACCAGTAGGTATGGTCGCTTTCCCG 15218 37 100.0 39 ..................................... GTGGTATGAAAAAGGCATGTGTGGCGCCGGATTAGGAAC 15294 37 100.0 35 ..................................... TTGGAGAACGGAAAGTCATCGCCAGTGCTATTGAC 15366 37 100.0 36 ..................................... GATACATACTTTTGCATCAGGAAAATCTTCTTTTTG 15439 37 100.0 34 ..................................... AAAGGTAAAGACGTCTCCCCCGTTATTGCATTGG 15510 37 100.0 38 ..................................... AGCAAAAACACATTCCACACAACATATAGCACACCATC 15585 37 100.0 42 ..................................... AAACAGAAACAAAGTCTGCGTCAAAAGCAGATAAAATTTCTT 15664 37 100.0 42 ..................................... AGAACTAAAAAGCAAATTATCAGGGTTAGTTTCTGTTTGTGC 15743 36 86.5 0 ....G...T.....................-.A..C. | ========== ====== ====== ====== ===================================== ========================================== ================== 11 37 98.8 38 GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Left flank : ACTCTGATCTTCACTGGTATGACTGGAATCGGTATTCTACGCGGCAGGAGCAGTGGATGTCCCTTGGTGGTGTTTTGGGAACTGTTACCTATGAAGGTAATAACTCCGAATTTATACCCTTTCTCAAATTAGGGGAATTTATCCATATCGGAAAAGGGACGTCATTCGGTCTTGGGAGATATGAAATAATGAAGTCTTCAAATAAGTAAAAAAGCAAAATAAGGAGGTGAATAAGGCGTTTTTCCCTTGTTGCCAGAAAAAAGAGAGAAAGTCCTAAATCCGTGCATAACAGACTATGTTTTAAAGAGTTAACGGATTTTAGAAACATAGTTAAAAAAGGGGGTGGTTACAGGAAAATCATAATCAATTGTGTTTTAACAGGTTAAGAGAATTTTTTAAGAAAAAGGATAAAAATCTCGATGTGTAATGATTACAGATTGTGGAGGTTACAGGAAATGGCCTTGCAAGTAGTTGTTAATTCTAAAGTTACATATGCCGGC # Right flank : CACCAATGGCGGAGTTGAAAGATGAATGTTGCAAGTTTAAAGGAAATAACGAAAAAGCATGAAAGATTTCGGGGAACTGAAAGTATGGCAAACGGGCATGAATTTATTTGATGAAGTGATAAGGGACATAGAAAAATTCCCAAAAACAGAGGTTGGCAAGATAATAGCAAATCAAATAATACGAAGTGTTTTTTCAATTACCGCTAATATTACAGAGAGATATGGAAGAAGGAAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTTTGTACATTATTTATATATTTCAAGAGGGTCTGCAAATGGAACAATTGATTGGTATGAAAAACTAAAAAGATCTGGGTTCATAGATTCAATGGTATTTGTGAAACGGGAACAAACATGCCAGGAGATACGGGCTATGTTGAGTAAGATGATTAGTACATGGGAGAAAGAATGACTTTTTACTTTTGACTTTCACTCCAGCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 416631-421983 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCTL01000095.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_lowcov_bin_ru-nijmegen, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 416631 30 100.0 38 .............................. CAAAGTAAATAATGATAAACGATTCTTACTGCTTTTTC 416699 30 100.0 36 .............................. TTCGTAAAGAATTCTTCTATGTTGCAAATTAATATC 416765 30 100.0 38 .............................. AATAGTTTTTGTATTGAGACGGAGCGAATGGTTAATTC 416833 30 100.0 36 .............................. ATGGAATCTGTGAAAAATGTTTCGGTAGCAATTTTC 416899 30 100.0 40 .............................. CCTATTGAAAAAATACCATTTCTGCAAAAATTTTCTTTAT 416969 30 100.0 36 .............................. TAAAATAATCTCTTTAATCTTTTAAAAAGCGCATGC 417035 30 100.0 38 .............................. TGTGTAAGTGAAGGCGGTTGTAATGAAGGCGAAAGATG 417103 30 100.0 35 .............................. TCAAAACAATCTTGACAATAATTTTCTCCATTATG 417168 30 100.0 37 .............................. GCAATAAAAAACTTTAATTTTAGAAAATTTTAAAACA 417235 30 100.0 37 .............................. ACAAGGGATTAATAAAATTTTTAAGGAACGTCAAGAG 417302 30 100.0 36 .............................. ACATGCAAGAGGAATGTAATCTCGCCTTTTGGCAAC 417368 30 100.0 38 .............................. TTACAATTTAATCCTGGTTTACAATTATTGTTTAACAA 417436 30 100.0 37 .............................. GAGCAATAAAAATATTTTTCGGTAAAGCATTCCTGAC 417503 30 100.0 36 .............................. TAATCATTACATTTTAACTATCATTACCTGCCAAAA 417569 30 100.0 38 .............................. AGAACCTCGGAAAGGCAATCCCAAAAACCACACTCCAA 417637 30 100.0 36 .............................. AGTTGTGGAAGACTTCGAGGGCAAAAACCATTTTAT 417703 30 100.0 36 .............................. CTGGTATTATCCTTAGTACCTTAGTACCTTAGTACC 417769 30 100.0 33 .............................. CCAGCTTTGTGCAATTCAGCAATCCGGGTACAA 417832 30 100.0 38 .............................. TAACGATGTACATTTGTGTTGCGGTTACAATTTTATAT 417900 30 100.0 36 .............................. CTTGTTAATCTTAGCATGATGCTGAAGTCGCGGAGC 417966 30 100.0 37 .............................. GAAAAGGAGCCGAAATGAATATTGAGACAACAAAAAC 418033 30 100.0 37 .............................. TTCTTCCCCCTCAGCGATAATGTTGTGTTTGTAGTGC 418100 30 100.0 37 .............................. AAAAACATAATATATTATGTTGGAGGAAAAGATATAG 418167 30 100.0 36 .............................. AGTGTTAAAGAAAAAGACATATAATGTAGAACTGCC 418233 30 100.0 37 .............................. ACCACCCGAAATTTATTGTATGGAATCCTTTTGTTAC 418300 30 100.0 36 .............................. TAAGAAACAAAAAATAAAATGATATAATATGATATG 418366 30 100.0 37 .............................. TAAATTATTGCCGTGGCCCGAAACAATGTTTGTTTTT 418433 30 100.0 38 .............................. AATTCCCTTTGCGAATTAGGCAATTCGGACAAACTTTA 418501 30 100.0 37 .............................. AGAACCAAAATTTGACGAAATCCCATTCTAAATTTAA 418568 30 100.0 37 .............................. ATAATCCTTGCACAAAATTACATAGGTAGATATGCAA 418635 30 100.0 36 .............................. TGTTTGAAGCATAAAGGTTTAAAGGATGATTGCAGG 418701 30 100.0 35 .............................. ATATTATACTAATGCAAGGGTTAACGCCGCAGTTG 418766 30 100.0 36 .............................. TTATCTTTTCCTCTTTTTTCAAGACGGTGGAAAAGC 418832 30 100.0 35 .............................. GAATATGGCAAGCATGGTACTTGATTCTATAGCGC 418897 30 100.0 35 .............................. TAGTCCACCTCGCAACGTATTGGTACTGCATAGCC 418962 30 100.0 36 .............................. AAGACAGAAACAGAACGAAAAGCTGAACAGAGGCGG 419028 30 100.0 35 .............................. ATGAGAACATTGCGGAATATCAGCGTACCTACCGG 419093 30 100.0 37 .............................. TATATTGATAATGATATATTAATGTTATGTGATTTAT 419160 30 100.0 36 .............................. GGGTCAGTACCCTGCCTGTTGCTAATGCCTCTTTAC 419226 30 100.0 38 .............................. TCGGGAAAATATTGGTAAAGAGATTCAGGATTTGTCTG 419294 30 100.0 36 .............................. GCCTATCATACCACCTATCCAATCGTTGTTGTCTCA 419360 30 100.0 36 .............................. CCTCACAGACGCGCTAAAAATTTCTTCAATTAATAA 419426 30 100.0 36 .............................. CGGGGGAAATGAGCGGAGAGGAAAAACAAGCATCGG 419492 30 100.0 38 .............................. CGATAAGGCGCAAAAGTGGTATAGTCCCCAGCAGTTTC 419560 30 100.0 39 .............................. TTGGAAGATTGCATTGAAAACGCCTATACATGGAATACA 419629 30 100.0 36 .............................. GGCGGCGGGGTAAATTATAATGGCATGACAGGATTT 419695 30 100.0 36 .............................. GAAGTTAAATCCCTGCGTCCTGGGATTTGAACTGGG 419761 30 100.0 38 .............................. AGACAATGGACTGCAAACTTGAAAAGAATGGAGTTTAT 419829 30 100.0 37 .............................. ATTTGTTCAAAAGCCAGTGCCCCGCCAAACCCAATCC 419896 30 100.0 35 .............................. GCAATGGCTGGTTGATTATTTTACTGGCGGCACAA 419961 30 100.0 36 .............................. TTCGTTCGGGGGGAGGATGTTAGCGAGTATTTGTTT 420027 30 100.0 36 .............................. TGGATTCTTAGAGACAACGCCGGGGAACGCAATCGA 420093 30 100.0 35 .............................. CGAAGGGCATCTATTTTTGCCTTGAATCCTGCATC 420158 30 100.0 37 .............................. CAGTGTAAGTAGTTTTATTATTCGCTATGATTTTAAT 420225 30 100.0 37 .............................. ACATCTCTACAACTTGAACAAACAAAATATTTATCGC 420292 30 100.0 36 .............................. CCATGTTTCTCGTAAAAATTTGTTTTACAGCGGTTG 420358 30 100.0 37 .............................. AATGCAATGTCCAGTTTCCCAACATCTCTACAGTTTG 420425 30 100.0 36 .............................. GCGCCTTTTCAAATTCCTTTTGCGCCTGGCATTCAG 420491 30 100.0 37 .............................. TCCAACAAACTCTGTAACTGTCCAAATCCAGTTAAAA 420558 30 100.0 36 .............................. GACACTTCCAGTTTTCGAGACGTCAAAAAAATCCTT 420624 30 100.0 37 .............................. TTAAATGTTGCATTAGGGAATTTACCAAATATGCATG 420691 30 100.0 36 .............................. TTTTTCAAAAGGAAATGCAGAAGCATTTGATTTTTG 420757 30 100.0 37 .............................. TTCTGAGAATTCATTTTAATCATAATGCTTAATTCAT 420824 30 100.0 37 .............................. TACATTGCAGGGATATTAAGTGTCTCTCTATGTGAAT 420891 30 96.7 35 .....................G........ AGCCGCAAAAAGGACAGCAATGGATACGGACAGAC 420956 30 100.0 37 .............................. TAATATTATAAACGCCCTTTGAAGGATAAAGGGGTTG 421023 30 100.0 36 .............................. GTTGTTTCGCCTGGTCGTATCCGGAAATAGATTCTC 421089 30 100.0 36 .............................. ATAGAAGATAGGTTGAAAGAAATACATAAAGTCAGA 421155 30 100.0 38 .............................. AGTAAATACAATTACCAGCAATGTGATAAAAAGTTTGA 421223 30 100.0 36 .............................. TAACCACAGGAACAACAGAATACTTCCTTCCATCTA 421289 30 100.0 38 .............................. TAACTTTGTCCTAGTCCATACATTAACTCTAAACGAGA 421357 30 100.0 37 .............................. GTGCAAAAACCATTCGTTAATTTATGTTGACAGTTTT 421424 30 100.0 36 .............................. GGATTATCCCAAAGCACATTGGATCGATGCCGCCTG 421490 30 100.0 36 .............................. CGGGTACGTACCAGAGCACCGTCTCGTCATGGAAGT 421556 30 100.0 36 .............................. TTTCCCATATCTCCTTTATAATGTGGCCTCTCCAGC 421622 30 100.0 36 .............................. GCGTGCGCCGCGACATGCCTTGCCCATTCGAGCTGC 421688 30 100.0 36 .............................. AAGATGGCGAAATCCACTTTCCAAAAGCGACAGGAT 421754 30 100.0 35 .............................. AAACTTTCCCGATTGATACAACTTTCCGGCAACTT 421819 30 100.0 38 .............................. AGGCCTTCACTAACTGTATTATTAATCTGCACGTTTGT 421887 30 100.0 37 .............................. GGGTACGGGAGAATTACAAGTTGCACTATTATAATGA 421954 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 81 30 100.0 37 GTTTTCATTCTACCTATGAGGAATTGAAAC # Left flank : GTAAGTTATCGAAGACTCATGAGGCTGGAGCTTTACAAACTGGAAAAACATCTTATGGAAGAGGAAACATACAAACCCTTTGTTATGGATTGGTAATGTTTGTTATATTGTACTATGATGTCAACAGTAAGCATTGCGGAAAAATGGTGAAGGCTTGCCGTAAGTATCTTCAATGGGTTCAAAATTCGGTTTTTGAAGGTGAAATATCAGAAGCTGCATATGAAAAAATGATTTTAGAACTTAAAAAAATAATTAAAAGTGAAGATAACGATTCAATTATCGTTTATAAATTCAGACAAATGAAATACTATGATAGATGTGTTTATGGCATGGATAAAAAGGATGATATTCAATTTATTTAACATCTGTCGACCTTTGATACAGAAAAATCTATTAAAGATCGACAGAAAATGTATAACATTTTTAGAAATTTATGGCATTTTTCCTTTTAAAATTGTTTAAAAAGCGCTGCAGAACGTCTTATCTCGCTTAAATGGCTG # Right flank : CCAACTATTTGAGTGGCTGTACCTTACCCGCCGCGAGTTTTCATTCGTAACTATTCAGCGTAATTTATTAAACTACCGGAGATCAGAACGTAATTGCACGGGAAACTTTGTTTCCGGTGAGGGTCTGACTTTACAAATTACAAACTGTCTTAACCCTGTGATTTTATTCCCTATCTATCAGCAAACAGGCGAGAAACCGGAGTTTCTCGAACAATTGCGTTCCCAAACTGGAGTTTGGGAACGAGCCGTGTATCGTTTACGCTGAATAGTTACTTTCATTCTACCTATGAGAATTTGAAACTGGAAAAACCCAGCCGCTATCCGCCCTCGTTTTCATTCTACCTAGTATGGCATTTCATTAAAATATCTACATTGATACCGTCATTGCAAGCGACAGCGAAGCAATCTTAAGTTTTTTGGGAACAAGAGATTGCTTCGTCGCTCCACCCCTCGCGATGACATTTTTTTACGTACACATTTTAACGAAACGATGTACTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 54-1460 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCTL01000123.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_lowcov_bin_ru-nijmegen, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 54 30 100.0 37 .............................. ACATCTCTACAACTTGAACAAACAAAATATTTATCGC 121 23 53.3 0 ...............T.CCTCCC------- - Deletion [144] 144 30 100.0 35 .............................. CCATGTTTCTCGTAAAAATTTGTTTTACAGCGGTT 209 30 96.7 37 .G............................ AATGCAATGTCCAGTTTCCCAACATCTCTACAGTTTG 276 30 100.0 36 .............................. GCGCCTTTTCAAATTCCTTTTGCGCCTGGCATTCAG 342 30 100.0 36 .............................. GACACTTCCAGTTTTCGAGACGTCAAAAAAATCCTT 408 30 100.0 37 .............................. TTAAATGTTGCATTAGGGAATTTACCAAATATGCATG 475 30 100.0 37 .............................. TTTTTTCAAAAGGAAATGCAGAAGCATTTGATTTTTG 542 30 100.0 37 .............................. TTCTGAGAATTCATTTTAATCATAATGCTTAATTCAT 609 30 100.0 37 .............................. TACATTGCAGGGATATTAAGTGTCTCTCTATGTGAAT 676 30 96.7 35 .....................G........ AGCCGCAAAAAGGACAGCAATGGATACGGACAGAC 741 30 100.0 38 .............................. TAACTTTGTCCTAGTCCATACATTAACTCTAAACGAGA 809 30 100.0 9 .............................. CGAATTCGA Deletion [848] 848 30 100.0 23 .............................. GTTTTCGTTATGTTGACAGTTTT Deletion [901] 901 30 100.0 36 .............................. GGATTATCCCAAAGCACATTGGATCGATGCCGCCTG 967 30 100.0 36 .............................. CGGGTACGTACCAGAGCACCGTCTCGTCATGGAAGT 1033 30 100.0 36 .............................. TTTCCCATATCTCCTTTATAATGTGGCCTCTCCAGC 1099 30 100.0 36 .............................. GCGTGCGCCGCGACATGCCTTGCCCATTCGAGCTGC 1165 30 100.0 36 .............................. AAGATGGCGAAATCCACTTTCCAAAAGCGACAGGAT 1231 30 100.0 35 .............................. AAACTTTCCCGATTGATACAACTTTCCGGCAACTT 1296 30 100.0 38 .............................. AGGCCTTCACTAACTGTATTATTAATCTGCACGTTTGT 1364 30 100.0 37 .............................. GGGTACGGGAGAATTACAAGTTGCACTATTATAATGA 1431 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 97.7 33 GTTTTCATTCTACCTATGAGGAATTGAAAC # Left flank : CAGTGTATGAGAATTGAAACCAGTGTAGTTTTATTATTCGCTATGATTTTAATG # Right flank : CCAACTATTTGAGTGGCTGTACCTTACCCGCCGCGAGTTTTCATTCGTAACTATTCAGCGTAATTTATTAAACTACCGGAGATCAGAACGTAATTGCACGGGAAACTTTGTTTCCGGTGAGGGTCTGACTTTACAAATTACAAACTGTCTTAACCCTGTGATTTTATTCCCTATCTATCAGCAAACAGGCGAGAAACCGGAGTTTCTCGAACAATTGCGTTCCCAAACTGGAGTTTGGGAACGAGCCGTGTATCGTTTACGCTGAATAGTTACTTTCATTCTACCTATGAGAATTTGAAACTGGAAAAACCCAGCCGCTATCCGCCCTCGTTTTCATTCTACCTAGTATGGCATTTCATTAAAATATCTACATTGATACCGTCATTGCAAGCGACAGCGAAGCAATCTTAAGTTTTTTGGGAACAAGAGATTGCTTCGTCGCTCCACCCCTCGCGATGACATTTTTTTACGTACACATTTTAACGAAACGATGTACTAGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 22424-23681 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCTL01000155.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_lowcov_bin_ru-nijmegen, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 22424 29 100.0 37 ............................. AGGGCAGATTCTGATAAATTCCCTAACGGGATTCCAA 22490 29 100.0 35 ............................. ATCCGTATGTAGTTCCTCAGAGGACTTGCGAGTGC 22554 29 100.0 34 ............................. CATTTTCTGAATCTGTATCTTTTATGTCTGCCAA 22617 29 100.0 35 ............................. TGGGAGTATGGGTATATTGTCCAGTTGTGGCTCTC 22681 29 100.0 36 ............................. TTGATTCTATTATCACTGAGCAATCGGAGATACTTG 22746 29 100.0 35 ............................. GAAATATCATAAGGCGTTGGCACGGGGTATGTTCC 22810 29 100.0 34 ............................. ATTGCCTTATCCAGCAATTCCAACTTTGCTCCTA 22873 29 100.0 38 ............................. GACGTATGTTTATAGTGCGGGCACTCGCCCCATGTAGT 22940 29 100.0 35 ............................. AAAACATATGGGACGATGGATTTTTCTGTGAATTA 23004 29 100.0 36 ............................. CTTCGACACATGGGGAATTGCAAAAGGCGGGTGTGC 23069 29 100.0 36 ............................. GAAATCCATACGCACGGGGAATTCCAGTAATAAGTC 23134 29 100.0 35 ............................. TAGTTATGCTCAATACACTGTTCCCCGCCTTCGTC 23198 29 100.0 38 ............................. GTCGGTATCAACGCCCTTGACATGGGGACAATTTCGAC 23265 29 100.0 37 ............................. GATCAAAAAGTTGATGTGTCGGTCGCGCTTAAACTCC 23331 29 100.0 36 ............................. GAAAAATAAGCCGGCTTAGAGCCTGAGTCTCTTTGC 23396 29 100.0 35 ............................. TTTAAAAACCATTCTAAATCTTGTTTCCCAGAAAT 23460 29 100.0 35 ............................. TTTGTTCTAGGCACTGCCGCTAACTTTGAAATTGT 23524 29 100.0 35 ............................. CACATACACATTGTGTTCTGATACCGAGCCGCAAA 23588 29 100.0 36 ............................. CTATCACGGGCAATTCTAAATTGTTCATCGACGCTT 23653 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 100.0 36 GTCTCATTGCACCTATAAGGAATTGAAAC # Left flank : TACAAAATTCTGTGTTTGAGGGAGAAATTACCGAAGCCAGACTGGAAGAATTGAAGATAAAGGCAAAGAAGATCATGAACGAGGAGGATAAGGACTCACTCATTGTATTCAAATCAAGAAATGAAAAATGGCTGGATAAAGAGATTGTTGGATTTGACAAAAGACCGGTTGATAATATATTATGACTATTAGGTTTGCTTTGACTGTTGGAATACAATGATACGACAAAAGTATTTCATTGTTTGGATAAGTAAGTGTTTCGTGATGGCTAAATATTATAAAAAAACCTGTCGACCTTAGGGTAAATACCTGTTCGTACGTCTCTGCAGGTCTATTTAGATACATTGAAATGAAGGTTATCCCGTCATGAGATGACAGTTTAAGTACTACATGTCGACCTGCCGGGTTTTTTACATAATGAGAGGTAGACGAGCAAAATGGCCATTTTTCATGCGAAAAAAAGTCATAAGTCTCTGTATTATTTGTACCCACAAAACGTG # Right flank : CTAACATCAATACAGTAATCTAAACGAGAAATATTCCCGTCTCATTATTGAAACATGGATGTCAAGAATAAGGGAAAAAACTAATGTCGCGTCTCATTGAACCAGTTGTTTAAGATGTCTATTTTCTCAACTTGACGGTGCCGCTATGTCTATAAACGTAATAATGGCAACGGCTGTAGTGCGCCAGAGTTCCTGTCCTGTGTTTTAATAATACCATTTATAGCCGTTGCCAACATTTTTTCCCCCTTTTTGTTGAAGGGTATGGTGCGGTAAAATGCAAAATTGTGTATTATGCATATGGTATTGTTTTATTTTCGTTTCAAACCAAAAGTTCATCACAAACAAAGCGAAACTGAATTATCAAAAGAGGCAAAAACGAGAATGCCTTGAAAAGCCTGAATGCGCTGTTAGAATAAAGATGTTTCGTAAGTATTTAAAAAATCTTAAGACACATTAAAAACCTTGAAAATAAATACGCACTATTTACAAATAATTGCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCATTGCACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 88538-89021 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCTL01000004.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_lowcov_bin_ru-nijmegen, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 88538 29 100.0 37 ............................. TTTGTTTAAATAAATCTAAATTAAGTTTTTGTACAAC 88604 29 100.0 36 ............................. TTTATACCGAGGTTATCGGAGGTATCCAGCCTTATT 88669 29 100.0 36 ............................. TTTTTTGCGCCTGCCCGCCAAAAACAAATGGCATAT 88734 29 100.0 36 ............................. TTCTCAGGGGCGATTCCGACACCCTCGATGGAAACC 88799 29 100.0 36 ............................. ATAATTTATGGAAAAGCGGAGATAGGCCTCAATAGA 88864 29 100.0 35 ............................. AATAAAAAATACAATATTTTATTTTTCATATTTTA 88928 29 100.0 36 ............................. TGAGGACGAGAGCAGATGATACATTCTGCGCAACAA 88993 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 100.0 36 GTCTCATTGCACCTATAAGGAATTGAAAC # Left flank : ATACAAAATTCTGTGTTTGAGGGAGAAATTACCGAAGCCAGACTGGAAGAATTGAAGATAAAGGCAAAGAAGATCATGAACGAGGAGGATAAGGACTCACTCATTGTATTCAAATCAAGAAATGAAAAATGGCTGGATAAAGAGATTGTTGGATTTGACAAAAGACCGGTTGATAATATATTATGACTATTAGGTTTGCTTTGACTGTTGGAATACAATGATACGACAAAAGTATTTCATTGTTTGGATAAGTAAGTGTTTCGTGATGGCTAAATATTATAAAAAAACCTGTCGACCTTAGGGTAAATACCTGTTCGTACGTCTCTGCAGGTCTATTTAGATACATTGAAATGAAGGTTATCCCGTCATGAGATGACAGTTTAAGTACTACATGTCGACCTGCCGGGTTTTTTACATAATGAGAGGTAGACGAGCAAAATGGCCATTTTTCATACGAAAAAAAGTCATAAGTCTCTGTATTATTTGTACCCACAAAACTG # Right flank : CGGTATTCGGGAGATTATCACGGCAACGTCAAAGTCACCCTACGAAAGACGCGGATCAAGAATTTGTGCCAAAAGCTCCCGTCAATAAGTGGAGAAGAAAGTTAAAAACGATAGGGTTCTCATGTAAACGGGCAAGAATGAGCAAAACAAGCAAAATGGAGCGGGAGTATCCCTGTAGTAATGAAAGAGATAGTAAAAAAATAAAGGCTTTTTTTTGTTCTCTACATTACAAGCGAAGCATTTGAAGTGCAAGAAAAGGTCTTGCCGCAAAATTTCTGAGCGTCTTTGCAATATTTGGTACATTGAGAAAATGAAACAGCCCAACCACAAGGTTCTTCAAAGAAGCCATTGCCCTTGGGGCATTTTGTGTGCGTATTTGAGAATGGTCTTCACGGAAGGAGGTATCACGCACATAATGAAGTCCATTTTCTATTGACCAGTGTCCGCGGGAAAACTTAAGAATGGTTTTGGGACTTGCTTTTTGTTGTGTCAGGCTGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCATTGCACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 2 91128-92190 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCTL01000004.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_lowcov_bin_ru-nijmegen, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 91128 29 100.0 34 ............................. GTGATATGTTAGAACTGGTAGCCTGAGAATCCCT 91191 29 100.0 37 ............................. CTGAAAAAAGGCAGGAATTACGTGCGAAAACTTACAA 91257 29 100.0 35 ............................. GTGGTAGAAGAAATACAGTAAGGACACCGAATTTG 91321 29 100.0 35 ............................. GGACGTAGGGATCTAACCTCTGATGTTAGAGAGGC 91385 29 100.0 37 ............................. GCTTACATTCCATCTTACGAATACGTGGCTTGCACTT 91451 29 100.0 36 ............................. GTATTGGGCAAGCGCAGATATATACACTGCGTCGTA 91516 29 100.0 37 ............................. TGACAGAAAAAATAAAGACATTTTTGGAGTACATACA 91582 29 100.0 34 ............................. CCCGTTACCGTACCATCTGCATTGAGAGTTGCCC 91645 29 89.7 37 CGT.......................... GGAGAATTTTTGGGTTCGTCGCTTGGAACGGGAGAAT 91711 29 100.0 35 ............................. TAAAAGAGATACACTCGTATTTATATAGCACCCTT 91775 29 100.0 37 ............................. TGTGGCACATTTTCTCAAGCATGATCATTTCTGGCTG 91841 29 100.0 36 ............................. GTAGAAACAATTCTCCCAATTATTGAGAAGTATAGG 91906 29 100.0 35 ............................. TATAAAGACCCCTCCATTTCACACTCTGTGATATC 91970 29 100.0 34 ............................. GAAAGTGTTCAGGGTGATAAGAGGCGAACAACAG 92033 29 100.0 36 ............................. TTGATTGCGGGAACAACAGGTATTCCAAAAAGGATT 92098 29 100.0 35 ............................. TGTGGTGTCTCGGACTATTTCAAGTTTTTTCCTAC 92162 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 17 29 99.4 36 GTCTCATTGCACCTATAAGGAATTGAAAC # Left flank : TGATAAGCGTTTAAGGTTAAGAGAAAGAATACGGGAGGCAAGGTTTGGTACGTGTATCTGAGGAAGGATCAGGAAACGTGAGTTGTTTGCTATGAGTTTCAGGCGTTGTGATTTTAAAAATGGCGGCCATCCAATCCACTTATCGCGAACGGTACATTTTAATGCTGCGGCAGCCCAGCCGATCAAGGCAAGCCATTGTCCCTGTGATTCCGCTACGTAGCGAATTGATTCTCCTACGAGAGAACGAAATCCAAGGTAATGATGCTGGCGCATCAGTGTGTCCAATTTGCCTGGTCGTTTTGTGAAACAGGACGAACGGTAATTGAATGAAGTAGTTCGTTGTGTGTGTTATCGATTGGTGTTGTATGCTGGTTCATGCCCTATAATATAAAATATTTTAGGGGGAATGTCCACGTTTTTTACATATCTTTGTATATTATGTGCTTATGGAAAACTTTGACAGCGCCGTGGGGAGATTATACATGGCTAAATAAAATCAA # Right flank : CTTGTGAGGTACAATAGGTCTTAAGTGCTCTAGCGTGAGTTTAATCACGAAATAAGGTGTAAGACAAAGACATCAAGTTGCAATCCAATGATTTGTATCGGGTTGCGACTTTTTTTGTCTAAAAAATTATGTATACACTGAATAATACTATATTTATATTGCATTATATGCCTGTATATACTATTATACACGGAGTATTAATCTATTACGTATACACTAACAACTAATAGCCATGGCTACCATTCAATCTAAAAACTCCAGAGGTTATAAATATTGGTATATTGTCGAATCGCGGCGCGTTAACGGCAAGCCCAGGCCCATCGTCCTGGCCTATCTTGGCAAGGCAGACGATTTATTAAAACAACTGCAAGGTCTTACCGAAAAATTACGGCTCAAATCTTATTCACATGGCGCGGTAGCCGCATTGCTAAGTGTGGCCAATGCCCTGGACGTCCCTTCCGTGATTAATAAATATATAAAGTCGCCACGGCAGTATTGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCATTGCACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 94237-95345 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCTL01000004.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_lowcov_bin_ru-nijmegen, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 94237 29 100.0 33 ............................. GAGGGTCGCTTGTATCGTCTATATGCGAATCAA 94299 29 100.0 36 ............................. AATCTCGGAAGGGCGTGAAAAGAAATTCCCAAACAC 94364 29 100.0 36 ............................. ACGATCAACCAACGACTAACCACAAACAATAATAAT 94429 29 100.0 35 ............................. TTGAAAACATGGCCATGTCGATACTGGATTCTATT 94493 29 100.0 35 ............................. GCCGCATCAGCCGCAATGTACTATCTCACCCGCAA 94557 29 100.0 33 ............................. GAGGGTCGCTTGTATCGTCTATATGCGAATCAA 94619 29 100.0 37 ............................. AGCGTTGTCATGCCGCGCCAGGCACGACTCGCCTGCG 94685 29 100.0 35 ............................. GATAATTTGATTTTTAGTTCTGAGTATAATTATTT 94749 29 100.0 37 ............................. TCAGCAATAAGGATTTTACTTGCCGCAGGCGTGGCGG 94815 29 100.0 38 ............................. CAGGATTTCGGAGGCATGTACGGAGCCGAGGAAACCGA 94882 29 100.0 35 ............................. CAATAAGATATGACCCCTCATCTACCACCTTCAGC 94946 29 100.0 35 ............................. TATCTATAATCCTACAACAAAACTATGTAGGCAGA 95010 29 100.0 35 ............................. ATTATCACTGAGCTTATCAGGCCGAAAAACGAAAA 95074 29 100.0 37 ............................. CGTCAGAGAGGCAGTACAGCACTGCCTCGTCGATAAA 95140 29 100.0 35 ............................. TTCGCATCCACTACATTAGATGAAAATATTGATGA 95204 29 100.0 36 ............................. TCGGTATTGTGTTCTACAATTGGAGAGGGAAGGAAC 95269 29 69.0 16 ................GGAA..CG.GG.A AGATACGACGGTAATT CCC [95285] Deletion [95314] 95317 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 98.3 34 GTCTCATTGCACCTATAAGGAATTGAAAC # Left flank : CATCACGATTGGGATACCGCGGACATTATAAAAGCCTACTATGGGCAATCAAAAATTGAACATGCCTTTAGAAATCTCAAGAACCCCTATCACCTTGCTTTAAAACCGCAATTTCACTGGACGGATCAGAAAATCAGGGTGCATTTTTTTATTTGCGTCCTCGGATACCTAATGGCGGCGATTGTGTGGTATCAGGCAAAAGCGCACGCACAATTTAGTGGAACGTTAGATACCCTGTTAGACACCCTTAATAATATAAGGCTTTCTGCTATGCTTGAAGAAACAAAGGCCAGAGGGAGAGTTAAGGCTACCTACAAATTGGAAGAAATGTCCGACAAGGAATCTCTGTTGATGAATGCGTTAGGCATTATGGATTTCCACAAACATCGGCTGAAACTTCAAGGACTCAGTGTATACAATTGATGTTGTGCTTAACGCATTGACTGTATTTATGTTACGTTGCTTCATGCCTTATTTTGTGATAAACTCACGCTAGTAGG # Right flank : CCGCAATGACAGGGCGTGACCCCATAAGCGCTAACTTGTTTTAGGTGCGCTCGAAGTATTTTGATATCTGTGTTTTTCGGATTCTTGTATTTTCTGCTAAAGAACAAGCAATGTCATTCCAGCACTTAAGAACTTCCTGTAATGATAACGCTGGTTCTATAGCCCGTTTTACTTGATTAAGCATAAAAGCAAATTCACGCCATTTGCTTTTAGTCTTCTTGCTTGACAATGAAGTATCCCCAGGGGGAAAAAGACGTAGCAAAATCTATTAGTTTTTCTGTCAAAAGAGCAACGAATAGTTTGCCATAAAGCCAAGCTTTTGAGCTATCATCATCGTATTTAGGTAAGTGTCCAAATTGTGCTATTTGTTTAAATCTTTTAAAGACCAGTTCAATTTGCCATCGAACTCGATACCATTCTAAGATATCAAAAGCGGTAAATTGATTTTCAGGAAACGTTGTGAATACTATTACGTACTTGGCATAAATAAGGGTCTCCGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCATTGCACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 4 96776-97324 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCTL01000004.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_lowcov_bin_ru-nijmegen, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 96776 29 100.0 35 ............................. TGTTGAGCGTGCAATAGACAAGGCATTTGACATGC 96840 29 100.0 36 ............................. GTTACAATGCCGATATCACGCCTTGCACCATTACCA 96905 29 100.0 36 ............................. GGGTGCAAGAAGTGCAATAATATTGGTTTTAAAGGC 96970 29 100.0 36 ............................. AGTAGTGGAATTAATGAAAAGCCTTGCTTCTGTACA 97035 29 100.0 37 ............................. AGTATTTGGTCGGGAAGTTTTTTCTTAAGATTACCCA 97101 29 100.0 35 ............................. TAAAGATATACAACAGGGATTATGAGGCGTTAGCT 97165 29 100.0 36 ............................. CTATCACGGGCAATTCTAAATTGTTCATCGACGCTT 97230 29 100.0 37 ............................. AGCTACAAGTCGCCTGCGTGAAAAAGACTTAAGTGAC 97296 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 100.0 36 GTCTCATTGCACCTATAAGGAATTGAAAC # Left flank : GAATGCGCCAAAGACTTCCTGTTTTCCCAGGTTCCTTTACTGTTGTTGCATCAAATAAGCGAAGATGAAAATTATTCCGTTTATTAATTTGGAGGCCACGCTCACGGAATAAAGATAAACATAATTTATATAGCCATTCTTTGCTCTTTTTTAATCGCTTTAATAAGGCAACATCGGATAAATCTGCTAAGTTAGCACGCTTGGCTCGAACTACTGTTTCACGCAATGAATAGCCACATCCTAAATGAATTAATAATGTTCGAAGAAGCTTTTCTTCAGATTTATCCTTGCGCAAGCCTTTTAAAGCATTTGTATCAACGGCTAAACTTTTCCAATCGTTTGGGAAGAAAGTTCTTAGAAGATCCCAATCTTCTCTCATCATGGCTTTATCCTCCTATAGAGTGATTAGCGGGATAATTAACATAAAAATACCATGATGAATAAAATTTGTCAATAAAACAAGTTAGCGCTTATGGGGCGTGACCCACCCACCACGGTGG # Right flank : CTAACATCAATACAGTAATCTAAACGAGAAATATTCCCGTCTCATTATTGAAACATGGATGTCAAGAATAAGGGAAAAAACTAATGTCGCGTCTCATTGAACCAGTTGTTTAAGATGTCTATTTTCTCAACTTGACGGTGCCGCTATGTCTATAAACGTAATAATGGCAACGGCTGTAGTGCGCCAGAGTTCCTGTCCTGTGTTTTAATAATACCATTTATAGCCGTTGCCAACATTTTTTCCCCCTTTTTGTTGAAGGGTATGGTGCGGTAAAATGCAAAATTGTGTATTATGCATATGGTATTGTTTTATTTTCGTTTCAAACCAAAAGTTCATCACAAACAAAGCGAAACTGAATTATCAAAAGAGGCAAAAACGAGAATGCCTTGAAAAGCCTGAATGCGCTGTTAGAATAAAGATGTTTCGTAAGTATTTAAAAAATCTTAAGACACATTAAAAACCTTGAAAATAAATACGCACTATTTACAAATAATTGCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCATTGCACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 43547-42913 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCTL01000002.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_lowcov_bin_ru-nijmegen, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 43546 37 100.0 44 ..................................... ATAAATAAGTATATGGCTGATAACTATGTGTTTGAGCTTCTAAT 43465 37 100.0 37 ..................................... CATACGTTCGGTTAATAAGCTCAGGCTTTGTGAATGG 43391 37 100.0 34 ..................................... ATAAGGCCGACCAGAAAGCAAATAGCCTAATGAC 43320 37 100.0 36 ..................................... TAAGTAGTAAACGCCTCAATAGGCTGAATGTAAAAT 43247 37 100.0 38 ..................................... CATAGCTGGGGTCGTCGAGATTTGAACCTTTTCTGGTT 43172 37 100.0 38 ..................................... CCTTTATTAAACGCCTTATACTGCCGTCCGTTTTTAGC 43097 37 100.0 39 ..................................... TTTCTGCTGATGTTGTATACTTTTCATCTTTCGAGAAAT 43021 37 100.0 35 ..................................... AAACGTCCCACACTTCTCTAATTGTGGCTAATTTA 42949 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 9 37 100.0 38 GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Left flank : TGTAATGGAGATATAACCAATGTTTTATTTGGTTTCCTATGATATTCCGGAAACAAGAAGAAGGACAAAGCTCGCAAAAATCCTGGAAGACTTTGGCGACCGGGTGCAGTATAGTGTATTTGAATGTATTTTGGATGAGAAGCTTTTAGGCAAAATGATAAAAAGAATACAGGAGATTATAATCGCAGAAGACGACAGTATCCGTATTTATTCTATTTGTGCCGGGTGTGAAAAAAGGATAGAAGTAATGGGAAAGGGAAAGGTCTCAAAGATTGAAAATATATACGTAATTTAAAGTGTGATAAGCATTTAGCGGATTTTTAAAACATAGCTAAAAAGGGGGTGGTTACAGGAAAATCATAATCGATTGTGTTTTAAGAGGTTAAGACAATTTTTTAATGGAAAGGATGAAAATTTCGATGTGTAATGATTACAGATTGTGGAGGTTGCAGGAAATGGCCTTGCAAGTAGTTGTTAATTCTAAAGTTACATATGCCGCT # Right flank : GCTTCAATTAAAAGGGCGAGGGTCACACCTTGATTGGTGATTAATTTGTTGATAATAAAAGGCAATTTTTATATCTTGGCTGCCATGACAAGGCCATGGCGCATAGAATTTGAAGGGGACTTACTATCACATCTTATCACGGGGAAATGAGCGAAGGAATATTTTCCATGACAATGACGATCGTATTTCGTTTCTAGATATTTTGGTAAACATGTCGGAACGGTTTGAGGTTGAAGTATATGCCTATGTTCTAATGGATAACCATTATCATTTACTCCTTAAAACCAGTAAAGAATCCACCCGCGGAGCAGGTGGCTTTGGGATAACCCCTATAAGGGGATGAAAATGCCTTCCTTCCAAAGGAAGCAAGGTTGAGTTGTCCCCATTTTAAATTTACCGTTGTGACTCTTCTTGGCGCTCTTTCTGCTCTTGATATTTCACATATTTACGTATCTTTTCCGTATCCAAACCAACGGTATCGACACAGTAACCTCTCGACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 11394-11731 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCTL01000041.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_lowcov_bin_ru-nijmegen, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 11394 37 100.0 38 ..................................... AAAAGCTACAGGCAAAGATTGATTGAGTATGTTGTTTA 11469 37 100.0 37 ..................................... GAAAACGGATTGGAGAACCCACTGTCATCAATTTCAG 11543 37 100.0 37 ..................................... GCTCATCGCCGTACCAGTAGGTATGGTCGCTTTCCCG 11617 37 100.0 42 ..................................... AGAACTAAAAAGCAAATTATCAGGGTTAGTTTCTGTTTGTGC 11696 36 86.5 0 ....G...T.....................-.A..C. | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 97.3 39 GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Left flank : ACTCTGATCTTCACTGGCATGACTGGAATCGGTATTCTACGCGGCAGGAGCAGTGGATGTCCCTTGGTGGTGTTTTGGGAACTGTTACCTATGAAGGTAATAACTCCGAATTTATACCCTTTCTCAAATTAGGGGAATTTATCCATATCGGAAAAGGGACGTCATTCGGTCTTGGGAGATATGAAATAATGAAGTCTTCAAATAAGTAAAAAAGCAAAATAAGGAGGTGAATAAGGCGTTTTTCCCTTGTTGCCAGAAAAAAGAGAGAAAGTCCTAAATCCGTGCATAACAGACTATGTTTTAAAGAGTTAACGGATTTTAGAAACATAGTTAAAAAAGGGGGTGGTTACAGGAAAATCATAATCAATTGTGTTTTAACAGGTTAAGAGAATTTTTTAAGAAAAAGGATAAAAATCTCGATGTGTAATGATTACAGATTGTGGAGGTTACAGGAAATGGCCTTGCAAGTAGTTGTTAATTCTAAAGTTACATATGCCGGC # Right flank : CACCAATGGCGGAGTTGAAAGATGAATGTTGCAAGTTTAAAGGAAATAACGAAAAAGCATGAAAGATTTCGGGGAACTGAAAGTATGGCAAACGGGCATGAATTTATTTGATGAAGTGATAAGGGACATAGAAAAATTCCCAAAAACAGAGGTTGGCAAGATAATAGCAAATCAAATAATACGAAGTGTTTTTTCAATTACCGCTAATATTACAGAGAGATATGGAAGAAGGAAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTTTGTACATTATTTATATATTTCAAGAGGGTCTGCAAATGGAACAATTGATTGGTATGAAAAACTAAAAAGATCTGGGTTCATAGATTCAATGGTATTTGTGAAACGGGAACAAACATGCCAGGAGATACGGGCTATGTTGAGTAAGATGATTAGTACATGGGAGAAAGAATGACTTTTTACTTTTGACTTTCACTCCAGCTCTGCTG # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 24421-25064 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCTL01000041.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_lowcov_bin_ru-nijmegen, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 24421 37 100.0 42 ..................................... GCTATGTTGCCGGGTGCTTTAGCTACTATCGCAGGTGCTTTT 24500 37 100.0 38 ..................................... GGTAAATACCTCGTTAACGCCGTCTAACATATTAATAC 24575 37 100.0 38 ..................................... AAAAAAGTATCCGTGCGCGCGCACGATACAACTAAACG 24650 37 100.0 38 ..................................... AGTGTCTTTTGCCCTCCGACCAGCACCTCCAGTTTGCC 24725 37 100.0 37 ..................................... GTCGCAGTCCTTGTTACTAAGCCACGCGTCATTCCAC 24799 37 100.0 41 ..................................... AACCTTGATTGAGAATGCTTGATGAGGAGCATACCCATTTT 24877 37 100.0 41 ..................................... GGTCATTGTTACCGGGAATAGCTCATCGCCGACACAATTGC 24955 37 100.0 36 ..................................... TCCAAAGAGCAGCTCCTTATGTACTTGATTTTGTCG 25028 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 100.0 39 GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Left flank : TGTAATGGAGATATAACCAATGTTTTATTTGGTTTCCTATGATATTCCGGAAACAAGAAGAAGGACAAAGCTCGCAAAAATCCTGGAAGACTTTGGCGACCGGGTGCAGTATAGTGTATTTGAATGTATTTTGGATGAGAAGCTTTTAGGCAAAATGATAAAAAGAATACAGGAGATTATAATCGCAGAAGACGACAGTATCCGTATTTATTCTATTTGTGCCGGGTGTGAAAAAAGGATAGAAGTAATGGGAAAGGGAAAGGTCTCAAAGATTGAAAATATATACGTAATTTAAAGTGTGATAAGCATTTAGCGGATTTTTAAAACATAGCTAAAAAGGGGGTGGTTACAGGAAAATCATAATCGATTGTGTTTTAAGAGGTTAAGACAATTTTTTAATGGAAAGGATGAAAATTTCGATGTGTAATGATTACAGATTGTGGAGGTTACAGGAAATGGCCTTGCAAGTAGTTGTTAATTCTAAAGTTACATATGCCGCT # Right flank : CGCTTCAATTAAAAGGGCGAGGGTCACACCTTGATTGGTGATTAATTTGTTGATAATAAAAGGCAATTTTTATATCTTGGCTGCCATGACAAGGCCATGGCGCATAGAATTTGAAGGGGACTTACTATCACATCTTATCACGGGGAAATGAGCGAAGGAATATTTTCCATGACAATGACGATCGTATTTCGTTTCTCGATATTTTGGGAAACATATAGGAACGGTTTGAGGTTGAAGTATATGCCTATGTTCTCATGGATAACCATTATCATTTACTCCTCAAAACCAATAAACCCAATATTTTTCAATGTATGCAATGGTTTGGAACTACGTACACGCACCGGTATAATTTAAAACACAAGCGAATTTGGCACCTTTTCCAGGGACGATTCAAAACCTTTCTTGTTGAAAAGGATGAATACCAGATGTGTCTTTCCCGCTATATACACAGGAATCCTTTACGAGCCAAAATAGTCAGGCGGTTGGCAGATTATCCGTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //