Array 1 1848084-1849761 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKL01000004.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03510 2014LSAL03510_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1848084 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1848145 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1848206 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1848267 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1848328 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1848389 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1848450 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1848511 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1848572 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1848633 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1848694 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1848755 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1848816 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1848878 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1848939 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1849000 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1849061 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1849122 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1849184 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1849245 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1849306 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1849368 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1849429 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1849490 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1849551 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1849612 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1849673 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1849734 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1866020-1868001 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKL01000004.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03510 2014LSAL03510_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1866020 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1866081 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1866142 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1866203 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1866264 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1866325 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1866386 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1866447 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1866508 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1866569 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1866630 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1866691 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1866752 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1866813 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1866874 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1866935 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1866996 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1867057 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1867118 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1867179 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1867240 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1867301 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1867362 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1867423 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1867484 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1867545 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1867606 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1867667 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1867728 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1867789 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1867850 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1867911 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1867972 29 96.6 0 A............................ | A [1867998] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //