Array 1 163568-162152 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLZY01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 26639-1 NODE_4_length_279666_cov_11.3233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163567 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163506 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163445 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163384 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163323 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163261 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163200 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 163139 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163078 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163017 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162956 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162895 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162834 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162773 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162712 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162650 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162547 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162486 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162425 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162364 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162303 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162242 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162181 29 96.6 0 A............................ | A [162154] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181803-179700 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLZY01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 26639-1 NODE_4_length_279666_cov_11.3233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181802 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 181741 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 181680 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 181619 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 181558 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 181497 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 181436 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 181375 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181314 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 181253 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 181192 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 181131 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 181070 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 181009 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180948 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180887 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180826 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180765 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180704 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180643 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180582 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180521 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180460 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180399 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180338 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180276 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180215 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 180154 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 180093 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 180032 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179971 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179910 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179849 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179788 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179727 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //