Array 1 32086-29871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEGZ01000012.1 Streptococcus suis strain S95N, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 32085 36 100.0 30 .................................... GATTGACTAAACTGTCTAGGATATTGTCGT 32019 36 100.0 30 .................................... TCGCGGGCGTCTACCCGCTTAACAAAGACT 31953 36 100.0 30 .................................... CCGAGTGGTGGCCGAGACATCGTTTAGGCT 31887 36 100.0 31 .................................... AAATTAACCTCTGTTGGTCAAGGATTGACAA 31820 36 100.0 30 .................................... TTATTTCTGAAACCGTACAAGATCAACTAA 31754 36 100.0 30 .................................... AACATCGTTTACATAACGACCAGCAGTTGA 31688 36 100.0 30 .................................... TAGCTGGCCAGACGCTCGTCGGCTTTTGCC 31622 36 100.0 30 .................................... TCTAAATTCAAGTGGTATGGTTAAAGAGAG 31556 36 100.0 30 .................................... TGGGGAAAATTTCATTCATTGGCACTGTGG 31490 36 100.0 30 .................................... TTACGCTTCTACAATTCATAATATCGCAAA 31424 36 100.0 30 .................................... CTAAGATGACAGAAAATATTAAAGATGCTT 31358 36 100.0 30 .................................... TAAAAGATTATTTATCAAATTGACGGGGAC 31292 36 100.0 30 .................................... CTAATTCGTTTATAATGTTTTGATAGGAAG 31226 36 100.0 30 .................................... TCTGCTTGTATGAGCCGTCTGGGGCTTTGT 31160 36 100.0 30 .................................... TTATTATTCTAAGTGTTGTTAAGCGTTGTA 31094 36 100.0 30 .................................... CATTTACCCTTCATTATAAATTCTATGAAT 31028 36 100.0 30 .................................... TATTAGTGATGGTCGTCCTGTTATGTTGAA 30962 36 100.0 30 .................................... CAACGAATGGATACTAACTACAGCTACGCC 30896 36 100.0 30 .................................... TCCAAACACTCGAGAAAAAGCAGTCCCAAT 30830 36 100.0 30 .................................... TTTAATCAAACCAGTCACAACATCAACACG 30764 36 100.0 30 .................................... ATGTGAATTGGTTGTATAATGCAAACGCAC 30698 36 100.0 30 .................................... GCGATCAACAATCTACTCAATCCAACGCAC 30632 36 100.0 30 .................................... TAAGACCGTTGATTTGCAGAGCGGTATTGA 30566 36 100.0 30 .................................... AGGTGAGTCAATACTATCATGACCGCTATA 30500 36 100.0 30 .................................... CAATCCGCAATTTCTCTTTACGAGCTTCGA 30434 36 100.0 30 .................................... CCGCTACGACTATCCGCTCTTTCTTGTCGC 30368 36 100.0 30 .................................... GAAAGGTGAACTTCCGCAAACTGCAACTGA 30302 36 100.0 30 .................................... TGAGGCGGTCAATCCGTTTGCTGACTTATT 30236 36 100.0 30 .................................... AAAAATTGCCAATCAATCCAGCTATTCCGT 30170 36 97.2 30 ...................................G AAACACAGTCGGTGTCATTGACTCAAATTA 30104 36 100.0 30 .................................... AACGTCAGACACTCCCTCAACACCTTCCGA 30038 36 100.0 30 .................................... AACTACTCAATTAATCGGAAACTTAAAAAT 29972 36 97.2 30 ...........................C........ GACCCCGTCTTTTTCTTTCTTCATTCCATA 29906 36 94.4 0 ..........C...T..................... | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.7 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCGTCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTAATTTAAGCTTCATTTTTTTAGGATGAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //