Array 1 103997-105488 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYX01000005.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 2009K0353 NODE_5_length_229715_cov_1.82746, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103997 29 100.0 32 ............................. CCTGCGTATATCTGGACGGAAACGAACTGGTT 104058 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 104119 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 104180 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 104241 29 100.0 32 ............................. ATCAACGATGCCAAACTCGGTGGCGATTGGCA 104302 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 104363 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 104424 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 104485 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 104546 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 104607 29 100.0 32 ............................. GTTGAAATCTTGGCCGCAGCGGAGGAAATGGG 104668 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 104729 29 100.0 32 ............................. AAATTTGGCTTGATGCCGCAAACAAAGAACTT 104790 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 104851 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 104912 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 104973 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 105034 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 105095 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 105156 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 105217 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 105278 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 105339 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 105400 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 105461 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121745-123240 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYX01000005.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 2009K0353 NODE_5_length_229715_cov_1.82746, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121745 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 121806 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 121867 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 121928 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 121989 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 122050 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 122111 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 122172 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 122233 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 122294 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 122355 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 122416 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 122477 29 100.0 33 ............................. GGCCTAGGTGATCCGTTGGCGTGGAACGTTAGC 122539 29 100.0 32 ............................. CAACTGCGACACATACCTCTCACACCATCACT 122600 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 122661 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 122722 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 122783 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 122844 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 122905 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 122967 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 123028 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 123089 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 123150 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 123211 29 100.0 0 ............................. | A [123238] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //